BAC Information

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BAC

Clone NameB6Ng01-100J09
Chromosome8 (Build37)
Map Location 127,875,921 - 128,045,328
singlet/doubletdoublet
Overlap geneSipa1l2
Upstream genePgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
Downstream gene4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100J09.bB6Ng01-100J09.g
ACCDH910038DH910039
length669982
definitionDH910038|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J09, 5' end.DH910039|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,044,655 - 128,045,328)(127,875,921 - 127,876,903)
sequence
gaattccaggtgcactgcttcccgaggttcagaacagaacccgggcttta
tccgtgctaggcaagcactcttccagcagaactgcagcctgggccaagaa
ccaagaaggaagtgcttccctgagcaccaggttcctcgtccagggaagca
gggtggcctgtggactctgccactcccttctttccttccctttcctttta
ccgtaggtaggtgtgagtttgtaaacagtatcggaactgtcaccagatgc
agttgtgatttaacagggtaatctgaaacacccttctccttctggtcttg
gtgttgcctccacaacactgagaagtgactgtgatcataaaggctgctgg
gggatgtggttgattcgtgttgctgtttcctgtggtagaattagaactca
ggcgttttaagagtatttattaaggctggagaaatgggtcagtgataagg
gtccaggttctaaatgaatgagtgaaagagaaagagagagagagagagag
agagagagagagagaaaggaatgaaggaagaaagaaagaatgtaagttta
atttgatagagaaagaaagatagaaataaatttagatagaaattttgaat
gaaggtattatggaagatagtctagcgagcataggtacatgacactccta
gaatgatggaggagaaagt
gaattcacaggctatatttgtttttattgtgtatgttttctggtaggatg
gagtctattgatctatgcccatgtgactaaagatggagggtgaagaggaa
gaatgtccgaactcacactgagagagagattgaaaggagcgaaacagaag
ccagaatcaacggaatgtcaggtcacacgcaggaacaagcactgcagagg
ccttagaaattagtctggtgaaacacttcccaaagcagagagaagaaaga
aattctagtccaggccaggacaagacccctggaaggaaaataatgagaac
agaaaaagcaaaggcgaacaaaataagaaaactccaaggctcagacgttg
gaactcaggagcccagcaggcaggaggctcagagacagcctgagaaagat
tcaaaagccacgtgcaggggccaaaggtgcagagaggaggaggcaaggag
cttccaaggccacagaaggtggtttctcataggacttgcaaatgagagca
agtgtggagtggtttaacttgtcactcacccttcttggctggctaaggca
ttgatgacctaagaggctcatttgtgaggcaagagtggatcagtccccca
tgcaggactgtgggaataagaaagttaacttgtggggctggaaagatggt
tcaggtgttaaagacaccactgttctttaaaggactggggttcaattccc
agcacttacatggcatcttacaaccatctgtaactccagatccagtcgat
caaataccacttcttctggcttctgcaagcaccgtacacatgtgggtgca
caagtggacaaaacgcccacacacaaaaagcaaaaagttttataagaaag
tttactccaagagccagaaaacagaaaggccgtcatatgcactgccctgt
acaaattctctctgcaatcaagaaaaatcaataacctgagaaatcaaaaa
ggagtctcccctttccaaagctcccccccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_128044655_128045328
seq2: B6Ng01-100J09.b_44_712 (reverse)

seq1  ACTTTCTCCTCCATCATACCTAGGAGTAATCATGTACCTTTGCTCGCTCG  50
      |||||||||||||||||  ||||||||  |||||||||| |||||||| |
seq2  ACTTTCTCCTCCATCAT-TCTAGGAGT-GTCATGTACCTATGCTCGCTAG  48

seq1  CTCTTTCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTT  100
        || |||||| |  | ||||| || |    ||||| |||   ||| |||
seq2  -ACTATCTTCCATAATACCTTCATT-CAAAATTTCTATCTAAATTTATTT  96

seq1  CTTTCTTTCTTTCTCTCTCTTTCTTTTTCTTCCTTTCTTTCTTTCTTCCT  150
      || ||||||||||||| ||    ||   ||| | ||||||||||||||||
seq2  CTATCTTTCTTTCTCTATC-AAATTAAACTTACATTCTTTCTTTCTTCCT  145

seq1  TCCTTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTT  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTT  195

seq1  CACTCATTCATTTAGAACCTGGACCCTTATCACTGACCCATTTCTCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTCATTTAGAACCTGGACCCTTATCACTGACCCATTTCTCCAGC  245

seq1  CTTAATAAATACTCTTAAAACGCCTGAGTTCTAATTCTACCACAGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAAATACTCTTAAAACGCCTGAGTTCTAATTCTACCACAGGAAAC  295

seq1  AGCAACACGAATCAACCACATCCCCCAGCAGCCTTTATGATCACAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACGAATCAACCACATCCCCCAGCAGCCTTTATGATCACAGTCAC  345

seq1  TTCTCAGTGTTGTGGAGGCAACACCAAGACCAGAAGGAGAAGGGTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGTTGTGGAGGCAACACCAAGACCAGAAGGAGAAGGGTGTTTC  395

seq1  AGATTACCCTGTTAAATCACAACTGCATCTGGTGACAGTTCCGATACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACCCTGTTAAATCACAACTGCATCTGGTGACAGTTCCGATACTGT  445

seq1  TTACAAACTCACACCTACCTACGGTAAAAGGAAAGGGAAGGAAAGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACTCACACCTACCTACGGTAAAAGGAAAGGGAAGGAAAGAAGGG  495

seq1  AGTGGCAGAGTCCACAGGCCACCCTGCTTCCCTGGACGAGGAACCTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGAGTCCACAGGCCACCCTGCTTCCCTGGACGAGGAACCTGGTG  545

seq1  CTCAGGGAAGCACTTCCTTCTTGGTTCTTGGCCCAGGCTGCAGTTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAAGCACTTCCTTCTTGGTTCTTGGCCCAGGCTGCAGTTCTGCT  595

seq1  GGAAGAGTGCTTGCCTAGCACGGATAAAGCCCGGGTTCTGTTCTGAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTGCTTGCCTAGCACGGATAAAGCCCGGGTTCTGTTCTGAACCT  645

seq1  CGGGAAGCAGTGCACCTGGAATTC  674
      ||||||||||||||||||||||||
seq2  CGGGAAGCAGTGCACCTGGAATTC  669

seq1: chr8_127875921_127876903
seq2: B6Ng01-100J09.g_70_1051

seq1  GAATTCACAGGCTATATTTGTTTTTATTGTGTATGTTTTCTGGTAGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGCTATATTTGTTTTTATTGTGTATGTTTTCTGGTAGGATG  50

seq1  GAGTCTATTGATCTATGCCCATGTGACTAAAGATGGAGGGTGAAGAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTATTGATCTATGCCCATGTGACTAAAGATGGAGGGTGAAGAGGAA  100

seq1  GAATGTCCGAACTCACACTGAGAGAGAGATTGAAAGGAGCGAAACAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCGAACTCACACTGAGAGAGAGATTGAAAGGAGCGAAACAGAAG  150

seq1  CCAGAATCAACGGAATGTCAGGTCACACGCAGGAACAAGCACTGCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCAACGGAATGTCAGGTCACACGCAGGAACAAGCACTGCAGAGG  200

seq1  CCTTAGAAATTAGTCTGGTGAAACACTTCCCAAAGCAGAGAGAAGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAATTAGTCTGGTGAAACACTTCCCAAAGCAGAGAGAAGAAAGA  250

seq1  AATTCTAGTCCAGGCCAGGACAAGACCCCTGGAAGGAAAATAATGAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGTCCAGGCCAGGACAAGACCCCTGGAAGGAAAATAATGAGAAC  300

seq1  AGAAAAAGCAAAGGCGAACAAAATAAGAAAACTCCAAGGCTCAGACGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGCAAAGGCGAACAAAATAAGAAAACTCCAAGGCTCAGACGTTG  350

seq1  GAACTCAGGAGCCCAGCAGGCAGGAGGCTCAGAGACAGCCTGAGAAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGAGCCCAGCAGGCAGGAGGCTCAGAGACAGCCTGAGAAAGAT  400

seq1  TCAAAAGCCACGTGCAGGGGCCAAAGGTGCAGAGAGGAGGAGGCAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCCACGTGCAGGGGCCAAAGGTGCAGAGAGGAGGAGGCAAGGAG  450

seq1  CTTCCAAGGCCACAGAAGGTGGTTTCTCATAGGACTTGCAAATGAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGGCCACAGAAGGTGGTTTCTCATAGGACTTGCAAATGAGAGCA  500

seq1  AGTGTGGAGTGGTTTAACTTGTCACTCACCCTTCTTGGCTGGCTAAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAGTGGTTTAACTTGTCACTCACCCTTCTTGGCTGGCTAAGGCA  550

seq1  TTGATGACCTAAGAGGCTCATTTGTGAGGCAAGAGTGGATCAGTCCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGACCTAAGAGGCTCATTTGTGAGGCAAGAGTGGATCAGTCCCCCA  600

seq1  TGCAGGACTGTGGGAATAAGAAAGTTAACTTGTGGGGCTGGAAAGATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGACTGTGGGAATAAGAAAGTTAACTTGTGGGGCTGGAAAGATGGT  650

seq1  TCAGGTGTTAAAGACACCACTGTTCTTTCAAAGGACTGGGGTTCAATTCC  700
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAGGTGTTAAAGACACCACTGTTCTTT-AAAGGACTGGGGTTCAATTCC  699

seq1  CAGCACTTACATGGCATCTTACAACCATCTGTAACTCCAGATCCAGTCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTACATGGCATCTTACAACCATCTGTAACTCCAGATCCAGTCGA  749

seq1  TCAAATACCACTTCTTCTGGCTTCTGCAGGCACCGTACACATGT-GGTGC  799
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TCAAATACCACTTCTTCTGGCTTCTGCAAGCACCGTACACATGTGGGTGC  799

seq1  ACAAGTGGACAAAACGCCCACACACAAAAAGCAAAAAGTTTTATAAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGGACAAAACGCCCACACACAAAAAGCAAAAAGTTTTATAAGAAA  849

seq1  GTTTACTCCAAGAGCCAGAAAACAAGAAAGGCCGTCATATGCACTGCCCT  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTACTCCAAGAGCCAGAAAAC-AGAAAGGCCGTCATATGCACTGCCCT  898

seq1  GTACAAATTCTCTCTGCAAATCAAG-AAAATCAATAACCTGCAGAAATCA  948
      ||||||||||||||||| ||||||| ||||||||||||||| ||||||||
seq2  GTACAAATTCTCTCTGC-AATCAAGAAAAATCAATAACCTG-AGAAATCA  946

seq1  AAAAGGAGTCTCCCC-TTCCCAAGCTCCCCCCCCCC  983
      ||||||||||||||| |||| |||||||||||||||
seq2  AAAAGGAGTCTCCCCTTTCCAAAGCTCCCCCCCCCC  982