BAC Information

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BAC

Clone NameB6Ng01-101J11
Chromosome8 (Build37)
Map Location 59,124,716 - 59,222,014
singlet/doubletdoublet
Overlap geneEG624433
Upstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
Downstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101J11.bB6Ng01-101J11.g
ACCDH910726DH910727
length1,2011,164
definitionDH910726|Mus musculus domesticus DNA, BAC clone: B6Ng01-101J11, 5' end.DH910727|Mus musculus domesticus DNA, BAC clone: B6Ng01-101J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,124,716 - 59,125,703)(59,220,824 - 59,222,014)
sequence
gaattccatagcttctcaatatgatgaatctgtctctgaattaaacattt
ttttcccttaggctgatttttatcagagtgtttttcacagaaaaagaaaa
gtaaccactacagacacaacagaagtgtccacaaaacagaaacagaagga
acactacctaactcatgctatgaagccacaattacctgatacctaagcta
cacaaggaccaaaaaagagaacttcagaccaatctcgcttatgaatatcg
atgaaaaaatactcaataaaattcttgcaaactgaatccaagaacacatt
aaaaccatcattcatcacaaccaagtaggtttcatttcagggatgtaagg
ttgatttaatatatgaaaatccattaacataatacactatatgaacaaac
tcaaagaaaaaaaaatcacatgatcatctcctcaaatgcagaaaaagcat
ttgacaaaatccaacaccccttcatgttaaaagtattggagagatcagga
tttcaaggtccatacccaaacataataaaagcaatttactgcaaaccagt
agccaacatcaaagtacatggagacatacttgaagcaatcccattgaaat
ctgaaacaggacaaggatgcccaatctccccatacctattcaatatagta
ctcaaagtgttagctagaacaataaggtaacaaaaagagatcaaggggat
acaaattggtaaagaagaaataaaggtatcactagaaaaatccttgctag
aaaaaagtttatgacaattatatgcttgtgtgatcttattatagaggtag
aaaataatatcactaccaatactaaaagcagcagaggtgcaggggaaaac
agagcacattatgtagtagagtttttgctaagagcacagggctgggttga
ggagtagcttggttggtgcagagtttgtcttctacacatacagccctggg
tttaatccacagcactgcatgaactagtgttggtagtgtacacattgtac
acgggcactctggaagtagaagaaaagagatcaaaggcattggattacaa
tgggagctagagccttgagaggaggagttatataagttctggattggatc
ctggcctgctaggtcagactgcttgcttaggtcatctgtacctctcaatt
tagtagttcagccccttcagtcaaacctgattaaatgagactattaattg
a
gaattccataggagcgaccactcactggcacacaagaatatcagtaagtg
ataggactataaaaacacattccttactacctaactgaactagcgaacac
caaggacagaatctcacagaagcagtagcaaatgccttccaggtttttat
tctgagcaggcactattggaatgaagtgaagcaaagatttgtgcctcact
gtttattatgcaaataatgatagtgataataataataataatcagcaata
gttggagtttgttcctttagatgagacaattaggcagagacttattagaa
aatatgctgatccattgtctgttttaaagaaagcaaagacgtcgaattat
ttgctaatgtgcactgagggagtcatactcacaaataaggcatggcagtg
ttacagaattctggttcaaatgtacatttcacctaatggtctaagaagga
actggaggattttcttcacatggccttttcttagcaaacatgtggtttgg
cttccataatatatctacttaaaagaaacttggaactagaagctagaagg
actttaatctggaagtgaagatcctataaaagatgctttctactttgcat
actttcagtattagcttcaagaagaaaccagaagaaagcctctaattaga
ggaccttgattgggtctaaaatgtggacacaatgggatatgttggaattt
tattactattatggtaaagaggcattgatggggtgatgcataaccaggag
aaacatggatagtatgtccagtagccctgacccaccatcaccccatccag
tagctagcaggaacatttcctttatatactaccgctgcaggaacaggagg
tttccattgtagactatgtaagagaaggcatagcatagaatgaagtagaa
tagaagttttttagcaaacaaaaatcacagaggtttagtggctattagtg
atggattgcattgaaaacagaaaggaagaaacaaagacaatacatgattt
ttcttagcaaatgagtgctgctgctaagctaagcaaagagagggttgatt
tacctcatgaatcctccagtttagtactatggaccgtatatcagaggatt
ccattagaaacaaattccaccaagataaatttcgaatctgtgaatgcaca
gataaacctgatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_59124716_59125703
seq2: B6Ng01-101J11.b_278_1243

seq1  CGCTTATGAATATCGATGAAAAAATACTCAATAAAATTCTTGCAAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTATGAATATCGATGAAAAAATACTCAATAAAATTCTTGCAAACTGA  50

seq1  ATCCAAGAACACATTAAAACCATCATTCATCACAACCAAGTAGGTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAACACATTAAAACCATCATTCATCACAACCAAGTAGGTTTCAT  100

seq1  TTCAGGGATGTAAGGTTGATTTAATATATGAAAATCCATTAACATAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATGTAAGGTTGATTTAATATATGAAAATCCATTAACATAATAC  150

seq1  ACTATATGAACAAACTCAAAGAAAAAAAAATCACATGATCATCTCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGAACAAACTCAAAGAAAAAAAAATCACATGATCATCTCCTCAA  200

seq1  ATGCAGAAAAAGCATTTGACAAAATCCAACACCCCTTCATGTTAAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAAAAGCATTTGACAAAATCCAACACCCCTTCATGTTAAAAGTA  250

seq1  TTGGAGAGATCAGGATTTCAAGGTCCATACCCAAACATAATAAAAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGATCAGGATTTCAAGGTCCATACCCAAACATAATAAAAGCAAT  300

seq1  TTACTGCAAACCAGTAGCCAACATCAAAGTACATGGAGACATACTTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCAAACCAGTAGCCAACATCAAAGTACATGGAGACATACTTGAAG  350

seq1  CAATCCCATTGAAATCTGAAACAGGACAAGGATGCCCAATCTCCCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCATTGAAATCTGAAACAGGACAAGGATGCCCAATCTCCCCATAC  400

seq1  CTATTCAATATAGTACTCAAAGTGTTAGCTAGAACAATAAGGTAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAATATAGTACTCAAAGTGTTAGCTAGAACAATAAGGTAACAAAA  450

seq1  AGAGATCAAGGGGATACAAATTGGTAAAGAAGAAATAAAGGTATCACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCAAGGGGATACAAATTGGTAAAGAAGAAATAAAGGTATCACTAG  500

seq1  AAAAATCCTTGCTAGAAAAAAGTTTATGACAATTATATGCTTGTGTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTTGCTAGAAAAAAGTTTATGACAATTATATGCTTGTGTGATC  550

seq1  TTATTATAGAGGTAGAAAATAATATCACTACCAATACTAAAAGCAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAGAGGTAGAAAATAATATCACTACCAATACTAAAAGCAGCAGA  600

seq1  GGTGCAGGGGAAAACAGAGCACATAATGTAGTAGAGTTTTTGCTAAGAGC  650
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTGCAGGGGAAAACAGAGCACATTATGTAGTAGAGTTTTTGCTAAGAGC  650

seq1  ACAGGGCTGGGTTGAGGAGTAGCTTGGTTGGTGCAGAGTTTGTCTTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTGGGTTGAGGAGTAGCTTGGTTGGTGCAGAGTTTGTCTTCTAC  700

seq1  ACATACAGCCCTGGGTTTAATCCACAGCACTGCATGAACTAGGTGTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ACATACAGCCCTGGGTTTAATCCACAGCACTGCATGAACTAGTGTTGGTA  750

seq1  GTGTACACATGGAACACGGGCACTCTGGAAGTAG-AGAAAAGAAGATCAA  799
      |||||||||| | ||||||||||||||||||||| ||||||| |||||||
seq2  GTGTACACATTGTACACGGGCACTCTGGAAGTAGAAGAAAAG-AGATCAA  799

seq1  AAGGCCATTGGGAATTACATGGGAAGCTAGAGCCTTGAAGAGGAAGGAGT  849
      |  | ||||||  ||||||  || ||||||||||||| ||||| ||||||
seq2  A--GGCATTGG--ATTACAATGGGAGCTAGAGCCTTG-AGAGG-AGGAGT  843

seq1  AATATAAGTTCTGGAATTGGATCCTGGCCTGCTAGGTCAGACATTGGCTT  899
       ||||||||||||| |||||||||||||||||||||||||||    ||||
seq2  TATATAAGTTCTGG-ATTGGATCCTGGCCTGCTAGGTCAGAC---TGCTT  889

seq1  GCTTATGGTCATCTGTGAACTTCACATATTAGTAAGTTCAGGCCCCCCCT  949
      ||||| ||||||||||  || || ||  ||||| |||||||    |||||
seq2  GCTTA-GGTCATCTGT--ACCTCTCAATTTAGT-AGTTCAG----CCCCT  931

seq1  CCATGTAAAACCTGGATTAATAGTAGTACTATTAATTGA  988
       || || |||||| |||||| |  || ||||||||||||
seq2  TCA-GTCAAACCT-GATTAA-ATGAG-ACTATTAATTGA  966

seq1: chr8_59220824_59222014
seq2: B6Ng01-101J11.g_67_1230 (reverse)

seq1  GCATCAGTTTTTATCTGTGCCATCTACAGATTCTGAAATTTTATCTTTGT  50
      |||||||  |||||||||| |||  |||||||| |||| |||||||| ||
seq2  GCATCAG-GTTTATCTGTG-CATTCACAGATTC-GAAA-TTTATCTTGGT  46

seq1  TGATATTTGTTTTCTAAAAATGGAATTCCTCTTCCTGATATACTGTCTCA  100
       || ||||| |||||   ||||||| ||||    ||||||||| ||| ||
seq2  GGA-ATTTG-TTTCT---AATGGAA-TCCT----CTGATATACGGTC-CA  85

seq1  TAGGTACTTAAACTTGGAGGAATGTCATGAGTAAATTCAAACCCTCTCTT  150
      || |||| ||||| |||||||   |||||||  || || |||||||||||
seq2  TA-GTAC-TAAAC-TGGAGGA--TTCATGAGGTAAATC-AACCCTCTCTT  129

seq1  TGCTTAGCCTTAGCAGCAGCCACTCATTTGCTTAAGAAAAATCAATGTAT  200
      ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||
seq2  TGCTTAG-CTTAGCAGCAG-CACTCATTTGC-TAAGAAAAATC-ATGTAT  175

seq1  TGTCTTTGTTTCTTCCTTTCTGTTTTCAATGCAATCCATCACTAATAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTTTCTTCCTTTCTGTTTTCAATGCAATCCATCACTAATAGCC  225

seq1  ACTAAACCTCTGTGATTTTTGTTTGCTAAAAAACTTCTATTCTACTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCTCTGTGATTTTTGTTTGCTAAAAAACTTCTATTCTACTTCAT  275

seq1  TCTATGCTATGGCCTTCTCTTACATAGTCTACAATGGAAACCTCCTGTTC  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTAT-GCCTTCTCTTACATAGTCTACAATGGAAACCTCCTGTTC  324

seq1  CTGCAGCGGTAGTATATAAAGGAAATGTTCCTGCTAGCTACTGGATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCGGTAGTATATAAAGGAAATGTTCCTGCTAGCTACTGGATGGGG  374

seq1  TGATGGTGGGTCAGGGCTACTGGACATACTATCCATGTTTCTCCTGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGGGTCAGGGCTACTGGACATACTATCCATGTTTCTCCTGGTTA  424

seq1  TGCATCACCCCATCAATGCCTCTTTACCATAATAGTAATAAAAATTCCAA  500
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCATCACCCCATCAATGCCTCTTTACCATAATAGTAAT-AAAATTCCAA  473

seq1  CATATCCCATTGTGTCCACATTTTAGACCCAATCAAGGTCCTCTAATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCATTGTGTCCACATTTTAGACCCAATCAAGGTCCTCTAATTAG  523

seq1  AGGCTTTCTTCTGGTTTCTTCTTGAAGCTAATACTGAAAGTATGCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCTTCTGGTTTCTTCTTGAAGCTAATACTGAAAGTATGCAAAGT  573

seq1  AGAAAGCATCTTTTATAGGATCTTCACTTCCAGATTAAAGTCCTTCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATCTTTTATAGGATCTTCACTTCCAGATTAAAGTCCTTCTAGC  623

seq1  TTCTAGTTCCAAGTTTCTTTTAAGTAGATATATTATGGAAGCCAAACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCCAAGTTTCTTTTAAGTAGATATATTATGGAAGCCAAACCAC  673

seq1  ATGTTTGCTAAGAAAAGGCCATGTGAAGAAAATCCTCCAGTTCCTTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCTAAGAAAAGGCCATGTGAAGAAAATCCTCCAGTTCCTTCTTA  723

seq1  GACCATTAGGTGAAATGTACATTTGAACCAGAATTCTGTAACACTGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTAGGTGAAATGTACATTTGAACCAGAATTCTGTAACACTGCCAT  773

seq1  GCCTTATTTGTGAGTATGACTCCCTCAGTGCACATTAGCAAATAATTCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATTTGTGAGTATGACTCCCTCAGTGCACATTAGCAAATAATTCGA  823

seq1  CGTCTTTGCTTTCTTTAAAACAGACAATGGATCAGCATATTTTCTAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTGCTTTCTTTAAAACAGACAATGGATCAGCATATTTTCTAATAA  873

seq1  GTCTCTGCCTAATTGTCTCATCTAAAGGAACAAACTCCAACTATTGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCCTAATTGTCTCATCTAAAGGAACAAACTCCAACTATTGCTGA  923

seq1  TTATTATTATTATTATCACTATCATTATTTGCATAATAAACAGTGAGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTATCACTATCATTATTTGCATAATAAACAGTGAGGCA  973

seq1  CAAATCTTTGCTTCACTTCATTCCAATAGTGCCTGCTCAGAATAAAAACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTTGCTTCACTTCATTCCAATAGTGCCTGCTCAGAATAAAAACC  1023

seq1  TGGAAGGCATTTGCTACTGCTTCTGTGAGATTCTGTCCTTGGTGTTCGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCATTTGCTACTGCTTCTGTGAGATTCTGTCCTTGGTGTTCGCT  1073

seq1  AGTTCAGTTAGGTAGTAAGGAATGTGTTTTTATAGTCCTATCACTTACTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTTAGGTAGTAAGGAATGTGTTTTTATAGTCCTATCACTTACTG  1123

seq1  ATATTCTTGTGTGCCAGTGAGTGGTCGCTCCTATGGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGTGTGCCAGTGAGTGGTCGCTCCTATGGAATTC  1164