BAC Information

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BAC

Clone NameB6Ng01-103K16
Chromosome8 (Build37)
Map Location 127,024,603 - 127,178,155
singlet/doubletdoublet
Overlap geneCog2, Agt, Capn9, 2310022B05Rik
Upstream geneAfg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
Downstream geneTtc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103K16.bB6Ng01-103K16.g
ACCDH912187DH912188
length1,1521,129
definitionDH912187|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K16, 5' end.DH912188|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,024,603 - 127,025,760)(127,177,027 - 127,178,155)
sequence
gaattccctaatgtgctttgaataaggcctgcaagctcacttgggtgttt
ctgtcttagtaatgggagattccagtatgctggacttctgcagaataaaa
cactctttgcatttacatactatttgagtctggggtatcattcttcaacg
aatcgtggacccttacaacaccaccagaccaacatccaacactccttcct
ctctagagcccattcttggcaggccagacccctgcccacccccacccttt
agacatcactgcactgggcattacatttccaatacatgcttttggggaat
gtatgtggaatacagtgtctctacttaaacattcacaggttatttgtggg
ttagagtaaggtgatatggctggtaatttggggtatttgatagttcagtg
cagccccctccctcccagctcctcttctctgctgctccggactgtgatga
cagagaaaaccttgaataaagcaatccaaggtttcctgctagctcaggcc
ctggatgtcagaagaaacagaaaagttctgtggagcacaggagacctctg
cttagtgatgcacaggcctgcccctgtgaaccatgggagggactcatttc
agtcattagggactcggtggcagagcatatatcataggaggaggaccgga
gagaggaagaaaacattacaattaacaaagttgctaaagcaatcatggag
tgaggggaaaccgttacaattaacaaaggagccaaagcaatcatgtagcc
acctgctgagagcagcgatgggcgggatgggcctcagaaagttctagaag
ccttggcacagatgaatagggtgacatttgcaaacagagcttgaagggga
cgtggtagcagacatctgaggatattccttgagaccctccaaagactgag
ggcctgaaaaccctgtagcaatatccagatggagactactgcgaaaggag
gttgaaatccttccagaactttctaaaaccacagtcctccacagtttaag
accactaagattgttctctctattgtgagtctccacccccaactttccaa
aggtctttcagctgtttctttagctatggactctgtacttgcaaatgttt
gaaggaccatggtatttactttaaaatgtttaaagatgtggttttagggg
at
gaattccaggaagcgaccactggggctccgacccacaagcactgccctga
ctcgcttcctggtgtcctgcgggcagttacctcccacagccacagcctct
gacttatcttcatagattcagagggactgaccttaaggagctcattagaa
gtcgagggaggtgacacatgagtgggtccagctcctacccttgtgatcgt
cctctggccactagcgtggcttgggctggtggcctcagaggagacgtgtg
ttagccagacaatccccttcacctctcccgcagtcacaccgagaataaac
agcgtctgtcctactgacctgcttcccttcccactgaagtaacacgttca
gccttcctaccgctgagagcagtgcgtcctgtctcaggagcctcgaatct
ccgagacttctgggtcacctcactcactgtctccatccccagcggccccc
agagatgaggacatgccccagccgcagctgtggctcccagccattgattc
acattcctccagatagccatggccatttttggaggggcagaatttagacg
ctggaagtaactggtatttagccgaaattccaaagtggaatgcagtgacc
ctgtttctcatttttaagaagtttttcctgacgactgtgtagtgcaaaat
agcccaagcgggctggagagacggatggcttagtggttaagagcgcttac
tactcttgcagaggacctgagtttggttcccagcacccatgtggggtggc
tcacaatgtctgtaactccagacattgtgaaaatattttatcaaaaagca
gtggaagtcagttctggagccaagatccccaacagatgttgccaaatggg
gaattaccactgtgtgggaccagtggcttatttatggtgggctgtacaag
ctgcgtagctgaagtcccttttggctttcttatgcctggccccatttact
gctgcagcatacacaaggtctggggatagactgttgtgacgtgtctcgga
tacatgtatcctagtgaacaggctttttccagtgtttacgtgcagtcccc
ggaccttctgctatcccattgaggtaaggacctgagctcaagtcttgcag
cccctgctgtctgtctcagcccttagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_127024603_127025760
seq2: B6Ng01-103K16.b_45_1196

seq1  GAATTCCCTAATGTGCTTTGAATAAGGCCTGCAAGCTCACTTGGGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAATGTGCTTTGAATAAGGCCTGCAAGCTCACTTGGGTGTTT  50

seq1  CTGTCTTAGTAATGGGAGATTCCAGTATGCTGGACTTCTGCAGAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAGTAATGGGAGATTCCAGTATGCTGGACTTCTGCAGAATAAAA  100

seq1  CACTCTTTGCATTTACATACTATTTGAGTCTGGGGTATCATTCTTCAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTGCATTTACATACTATTTGAGTCTGGGGTATCATTCTTCAACG  150

seq1  AATCGTGGACCCTTACAACACCACCAGACCAACATCCAACACTCCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGGACCCTTACAACACCACCAGACCAACATCCAACACTCCTTCCT  200

seq1  CTCTAGAGCCCATTCTTGGCAGGCCAGACCCCTGCCCACCCCCACCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGCCCATTCTTGGCAGGCCAGACCCCTGCCCACCCCCACCCTTT  250

seq1  AGACATCACTGCACTGGGCATTACATTTCCAATACATGCTTTTGGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCACTGCACTGGGCATTACATTTCCAATACATGCTTTTGGGGAAT  300

seq1  GTATGTGGAATACAGTGTCTCTACTTAAACATTCACAGGTTATTTGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGAATACAGTGTCTCTACTTAAACATTCACAGGTTATTTGTGGG  350

seq1  TTAGAGTAAGGTGATATGGCTGGTAATTTGGGGTATTTGATAGTTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTAAGGTGATATGGCTGGTAATTTGGGGTATTTGATAGTTCAGTG  400

seq1  CAGCCCCCTCCCTCCCAGCTCCTCTTCTCTGCTGCTCCGGACTGTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTCCCTCCCAGCTCCTCTTCTCTGCTGCTCCGGACTGTGATGA  450

seq1  CAGAGAAAACCTTGAATAAAGCAATCCAAGGTTTCCTGCTAGCTCAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAACCTTGAATAAAGCAATCCAAGGTTTCCTGCTAGCTCAGGCC  500

seq1  CTGGATGTCAGAAGAAACAGAAAAGTTCTGTGGAGCACAGGAGACCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTCAGAAGAAACAGAAAAGTTCTGTGGAGCACAGGAGACCTCTG  550

seq1  CTTAGTGATGCACAGGCCTGCCCCTGTGAACCATGGGAGGGACTCATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGATGCACAGGCCTGCCCCTGTGAACCATGGGAGGGACTCATTTC  600

seq1  AGTCATTAGGGACTCGGTGGCAGAGCATATATCATAGGAGGAGGACCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTAGGGACTCGGTGGCAGAGCATATATCATAGGAGGAGGACCGGA  650

seq1  GAGAGGAAGAAAACATTACAATTAACAAAGTTGCTAAAGCAATCATGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGAAAACATTACAATTAACAAAGTTGCTAAAGCAATCATGGAG  700

seq1  TGAGGGGAAACCGTTACAATTAACAAAGGAGCCAAAGCAATCATGTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGAAACCGTTACAATTAACAAAGGAGCCAAAGCAATCATGTAGCC  750

seq1  ACCTGCTGAGAGCAGCGATGGGCGGGATGGGCCTCAGAAGGTTCTAGAAG  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCTGCTGAGAGCAGCGATGGGCGGGATGGGCCTCAGAAAGTTCTAGAAG  800

seq1  CCTTGGCACAGATGAATAGGCTGACATTTGCAAACAGAGCTTGAAGGGGA  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTTGGCACAGATGAATAGGGTGACATTTGCAAACAGAGCTTGAAGGGGA  850

seq1  CGTGGTAGCAGACATCTGAGGATATTCC-TGAGACCCTCCAAAGACTGAG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CGTGGTAGCAGACATCTGAGGATATTCCTTGAGACCCTCCAAAGACTGAG  900

seq1  GGCCTGAAAACCCTGTAGCAATATCCAGAAGGAGACTACTG-GAAAGGAG  948
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GGCCTGAAAACCCTGTAGCAATATCCAGATGGAGACTACTGCGAAAGGAG  950

seq1  GTTGAAATCCTTCCAGAACTTTCTAAAACCACAGTCCTCCACAGTTT-AG  997
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTGAAATCCTTCCAGAACTTTCTAAAACCACAGTCCTCCACAGTTTAAG  1000

seq1  ACCACTAAGACTGTTCTCCTTCTATTGTGAGTCTCCACCCCCAACTTTCC  1047
      |||||||||| |||||||  ||||||||||||||||||||||||||||||
seq2  ACCACTAAGATTGTTCTC--TCTATTGTGAGTCTCCACCCCCAACTTTCC  1048

seq1  AAAAGGTCATTCAGTCTGTTTCCTTAGCTATGGACTCTGTACTTGCAGAT  1097
       ||||||| ||||| ||||||| |||||||||||||||||||||||| ||
seq2  -AAAGGTCTTTCAG-CTGTTTCTTTAGCTATGGACTCTGTACTTGCAAAT  1096

seq1  AGTTTTGAAGGGACCCATGGTATTTACATTAAGATGTTTTAAAGATTGTG  1147
         ||||||||   ||||||||||||| |||| ||| |||||||||   |
seq2  --GTTTGAAGG--ACCATGGTATTTACTTTAAAATG-TTTAAAGATGTGG  1141

seq1  TTTTAGGGGAT  1158
      |||||||||||
seq2  TTTTAGGGGAT  1152

seq1: chr8_127177027_127178155
seq2: B6Ng01-103K16.g_70_1198 (reverse)

seq1  GAGCTAAGGGCTGGGCACAG-CAGCAGGGGCTGCAAG-CTTGTGCTCAGG  48
      ||||||||||||| | |||| |||||||||||||||| |||| |||||||
seq2  GAGCTAAGGGCTGAG-ACAGACAGCAGGGGCTGCAAGACTTGAGCTCAGG  49

seq1  TCCTTTCCTCCAGTGGGTACGCAGAGTGTCCGGGGACTGCACGTTAACAC  98
      ||||| ||| || ||||   |||||  ||||||||||||||||| |||||
seq2  TCCTTACCT-CAATGGGATAGCAGAAGGTCCGGGGACTGCACGTAAACAC  98

seq1  TGGAGAAAGCCTGTTCACTTGGATACATGTTATACCGAGACTACGTCACA  148
      |||| |||||||||||||| ||||||||| ||| ||||||| ||||||||
seq2  TGGAAAAAGCCTGTTCACTAGGATACATG-TAT-CCGAGAC-ACGTCACA  145

seq1  GACAGTCTATCCCCAGACC-TGTGTATGCTGCAGCAGTAAATGGGGCCAG  197
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  -ACAGTCTATCCCCAGACCTTGTGTATGCTGCAGCAGTAAATGGGGCCAG  194

seq1  GCATTAAGAAAGCCAAAAGGGACCTCAGCTACGCAGCTGGTACAGCCCAC  247
      ||| ||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GCA-TAAGAAAGCCAAAAGGGACTTCAGCTACGCAGCTTGTACAGCCCAC  243

seq1  CATAAAT-AGCCACTGGTCCCACACAGTGGTAATT-CCCATTTGGCAACA  295
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  CATAAATAAGCCACTGGTCCCACACAGTGGTAATTCCCCATTTGGCAACA  293

seq1  TCTGTTGGGGATCTTGGCTCCAGAACTGACTTCCACTGCTTTTTGATAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGGGATCTTGGCTCCAGAACTGACTTCCACTGCTTTTTGATAAA  343

seq1  ATATTTTCACAATGTCTGGAGTTACAGACATTGTGAGCCACCCCACATGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCACAATGTCTGGAGTTACAGACATTGTGAGCCACCCCACATGG  393

seq1  GTGCTGGGAACCAAACTCAGGTCCTCTGCAAGAGTAGTAAGCGCTCTTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGAACCAAACTCAGGTCCTCTGCAAGAGTAGTAAGCGCTCTTAA  443

seq1  CCACTAAGCCATCCGTCTCTCCAGCCCGCTTGGGCTATTTTGCACTACAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGCCATCCGTCTCTCCAGCCCGCTTGGGCTATTTTGCACTACAC  493

seq1  AGTCGTCAGGAAAAACTTCTT-AAAATGAG-AACAGGGTCACTGCATTCC  543
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  AGTCGTCAGGAAAAACTTCTTAAAAATGAGAAACAGGGTCACTGCATTCC  543

seq1  ACTTTGGAATTTCGGCTAAATACCAGTTACTTCCAGCGTCTAAATTCTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAATTTCGGCTAAATACCAGTTACTTCCAGCGTCTAAATTCTGC  593

seq1  CCCTCCAAAAATGGCCATGGCTATCTGGAGGAATGTGAATCAATGGCTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAAAATGGCCATGGCTATCTGGAGGAATGTGAATCAATGGCTGG  643

seq1  GAGCCACAGCTGCGGCTGGGGCATGTCCTCATCTCTGGGGGCCGCTGGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAGCTGCGGCTGGGGCATGTCCTCATCTCTGGGGGCCGCTGGGG  693

seq1  ATGGAGACAGTGAGTGAGGTGACCCAGAAGTCTCGGAGATTCGAGGCTCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACAGTGAGTGAGGTGACCCAGAAGTCTCGGAGATTCGAGGCTCC  743

seq1  TGAGACAGGACGCACTGCTCTCAGCGGTAGGAAGGCTGAACGTGTTACTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGACGCACTGCTCTCAGCGGTAGGAAGGCTGAACGTGTTACTT  793

seq1  CAGTGGGAAGGGAAGCAGGTCAGTAGGACAGACGCTGTTTATTCTCGGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAGGGAAGCAGGTCAGTAGGACAGACGCTGTTTATTCTCGGTG  843

seq1  TGACTGCGGGAGAGGTGAAGGGGATTGTCTGGCTAACACACGTCTCCTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCGGGAGAGGTGAAGGGGATTGTCTGGCTAACACACGTCTCCTCT  893

seq1  GAGGCCACCAGCCCAAGCCACGCTAGTGGCCAGAGGACGATCACAAGGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACCAGCCCAAGCCACGCTAGTGGCCAGAGGACGATCACAAGGGT  943

seq1  AGGAGCTGGACCCACTCATGTGTCACCTCCCTCGACTTCTAATGAGCTCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGGACCCACTCATGTGTCACCTCCCTCGACTTCTAATGAGCTCC  993

seq1  TTAAGGTCAGTCCCTCTGAATCTATGAAGATAAGTCAGAGGCTGTGGCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTCAGTCCCTCTGAATCTATGAAGATAAGTCAGAGGCTGTGGCTG  1043

seq1  TGGGAGGTAACTGCCCGCAGGACACCAGGAAGCGAGTCAGGGCAGTGCTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTAACTGCCCGCAGGACACCAGGAAGCGAGTCAGGGCAGTGCTT  1093

seq1  GTGGGTCGGAGCCCCAGTGGTCGCTTCCTGGAATTC  1129
      ||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCGGAGCCCCAGTGGTCGCTTCCTGGAATTC  1129