BAC Information

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BAC

Clone NameB6Ng01-103N07
Chromosome8 (Build37)
Map Location 98,430,621 - 98,533,212
singlet/doubletdoublet
Overlap geneLOC667445
Upstream geneCcdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103N07.bB6Ng01-103N07.g
ACCDH912300DH912301
length958955
definitionDH912300|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N07, 5' end.DH912301|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,532,691 - 98,533,212)(98,430,621 - 98,431,576)
sequence
gaattcactttaattacttaaaaatatatatctatacaattctcacacct
aaagctgaagagttgctgcagaagagggggcaggaagactttaagagcct
gggatcggggaggctactgtgagaccatgtctcctagagacatcagcagc
tgcatccattacgtttcatgaagatgactgtgtaaacataggctgaagaa
ggatgacaagaacagacattctgtcacaggaggaggcagggaaccctgga
agcctcagtcccacactaagaactacaggcaaccaaagattgctcagagc
aaaagaaatcattttctccagagaagagtgtgcaattagttacgcaatac
caaatggttagccctggaaacaagcatacaagtaacattgtacaggctga
gcatgttgtatttatatatctagagatatgtatatgaatataaatgcatg
tgtgtaagaacaattaatgaaaaggaggccattatctcacagacagcaag
gaggagtatatagaaggatttagagaggggaaatgttgggagccgccccc
acattcgccgtcacaagatggcgctgacatcctgtgttctaagtggtaaa
caaataatctgcgcatgtgccaagagtaattttccactacatgtactctg
cctttactcggccatgggctgcagccaatcagggagtgatgcgtcctagg
caaagaataattctccttaaaaggggacggggtttccgccattctctctc
ttacttgcgctctcttgcttgcgcttttgcgctctggcgctggcgctcgc
gctctggcgcgctggcgctctggctcctaaagatgtaagcggggggcttt
cgtttttgggcttgggggcttgcgctcctgctcctaaagatgtaaaaaat
aaagttttgccacagaagattctggtttgttgtgttcttcctggccggtc
gtgagaac
gaattcttaaggccaccccacatgcagtggcacgaggctaccctctgtct
ttgctgctgctgctacaggggagtcaagtgaccatgccctgaaacccata
aaccatgagccaaactaaatgaatgcttctgctgaaagttgttcccctca
gatattctgtcatagcaacagaacatggatcagtccacttttgtaaggct
agggcattttatactgtattacgcaacttcctgtgtttccggtctgtttt
ctctatgaaggtctgtggagacggagacagagcccatgccaacgatctca
ccgtacattcagaatctggtagagtgcatcatacctacgcaaatattttg
tttcttatgcatctcattaaaatctcagccatatcgctgggtggtgatgg
accacgcctttaattccagcactcaggaggcagaggcaggtggatctctc
tgagcttgaggtcagcctggtctacagagcaagttccaagatagccaggg
ttatatagagaaaccctgtctcgaaaactctttttttttttttttttaaa
tcttaactatatcctcaccagaaattgcattgtgagacagaactaggtgt
gatggtgctcgtccttacagctggactaatttgtttctgtgaatcttcta
ttcattggcttacattagatgactaagatggagaaaactattctgtgtac
tggggaccaggtcccgtgttgcccggaactcatgtcttcttcagcttacg
gcgtaggaaatagctgagagccctgagtttgtttggcttgggcccctgac
catctcaccttttcccctttcattgagaaaacaacccatcttaaatatca
tagcaaagctggggattgtgatgcctgcctttattcttgacattctagag
tagaagaagattgaagctagcccatctacaaagcacccgagccagctacc
actac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_98532691_98533212
seq2: B6Ng01-103N07.b_46_567 (reverse)

seq1  TAAATCCTTCTATATACTCCTCCTTGCTGTCTGTGAGATAATGGCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTTCTATATACTCCTCCTTGCTGTCTGTGAGATAATGGCCTCCT  50

seq1  TTTCATTAATTGTTCTTACACACATGCATTTATATTCATATACATATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAATTGTTCTTACACACATGCATTTATATTCATATACATATCTC  100

seq1  TAGATATATAAATACAACATGCTCAGCCTGTACAATGTTACTTGTATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATAAATACAACATGCTCAGCCTGTACAATGTTACTTGTATGCT  150

seq1  TGTTTCCAGGGCTAACCATTTGGTATTGCGTAACTAATTGCACACTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAGGGCTAACCATTTGGTATTGCGTAACTAATTGCACACTCTTC  200

seq1  TCTGGAGAAAATGATTTCTTTTGCTCTGAGCAATCTTTGGTTGCCTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAAAATGATTTCTTTTGCTCTGAGCAATCTTTGGTTGCCTGTAG  250

seq1  TTCTTAGTGTGGGACTGAGGCTTCCAGGGTTCCCTGCCTCCTCCTGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTGTGGGACTGAGGCTTCCAGGGTTCCCTGCCTCCTCCTGTGAC  300

seq1  AGAATGTCTGTTCTTGTCATCCTTCTTCAGCCTATGTTTACACAGTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCTGTTCTTGTCATCCTTCTTCAGCCTATGTTTACACAGTCATC  350

seq1  TTCATGAAACGTAATGGATGCAGCTGCTGATGTCTCTAGGAGACATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAACGTAATGGATGCAGCTGCTGATGTCTCTAGGAGACATGGTC  400

seq1  TCACAGTAGCCTCCCCGATCCCAGGCTCTTAAAGTCTTCCTGCCCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTAGCCTCCCCGATCCCAGGCTCTTAAAGTCTTCCTGCCCCCTCT  450

seq1  TCTGCAGCAACTCTTCAGCTTTAGGTGTGAGAATTGTATAGATATATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCAACTCTTCAGCTTTAGGTGTGAGAATTGTATAGATATATATT  500

seq1  TTTAAGTAATTAAAGTGAATTC  522
      ||||||||||||||||||||||
seq2  TTTAAGTAATTAAAGTGAATTC  522

seq1: chr8_98430621_98431576
seq2: B6Ng01-103N07.g_70_1024

seq1  GAATTCTTAAGGCCACCCCACATGCAGTGGCACGAGGCTACCCTCTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGCCACCCCACATGCAGTGGCACGAGGCTACCCTCTGTCT  50

seq1  TTGCTGCTGCTGCTACAGGGGAGTCAAGTGACCATGCCCTGAAACCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTGCTGCTACAGGGGAGTCAAGTGACCATGCCCTGAAACCCATA  100

seq1  AACCATGAGCCAAACTAAATGAATGCTTCTGCTGAAAGTTGTTCCCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAGCCAAACTAAATGAATGCTTCTGCTGAAAGTTGTTCCCCTCA  150

seq1  GATATTCTGTCATAGCAACAGAACATGGATCAGTCCACTTTTGTAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTGTCATAGCAACAGAACATGGATCAGTCCACTTTTGTAAGGCT  200

seq1  AGGGCATTTTATACTGTATTACGCAACTTCCTGTGTTTCCGGTCTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTTTATACTGTATTACGCAACTTCCTGTGTTTCCGGTCTGTTTT  250

seq1  CTCTATGAAGGTCTGTGGAGACGGAGACAGAGCCCATGCCAACGATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGAAGGTCTGTGGAGACGGAGACAGAGCCCATGCCAACGATCTCA  300

seq1  CCGTACATTCAGAATCTGGTAGAGTGCATCATACCTACGCAAATATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACATTCAGAATCTGGTAGAGTGCATCATACCTACGCAAATATTTTG  350

seq1  TTTCTTATGCATCTCATTAAAATCTCAGCCATATCGCTGGGTGGTGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATGCATCTCATTAAAATCTCAGCCATATCGCTGGGTGGTGATGG  400

seq1  ACCACGCCTTTAATTCCAGCACTCAGGAGGCAGAGGCAGGTGGATCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCCTTTAATTCCAGCACTCAGGAGGCAGAGGCAGGTGGATCTCTC  450

seq1  TGAGCTTGAGGTCAGCCTGGTCTACAGAGCAAGTTCCAAGATAGCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGAGGTCAGCCTGGTCTACAGAGCAAGTTCCAAGATAGCCAGGG  500

seq1  TTATATAGAGAAACCCTGTCTCGAAAACTCTTTTTTTTTTTTTTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGAGAAACCCTGTCTCGAAAACTCTTTTTTTTTTTTTTTTTAAA  550

seq1  TCTTAACTATATCCTCACCAGAAATTGCATTGTGAGACAGAACTAGGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTATATCCTCACCAGAAATTGCATTGTGAGACAGAACTAGGTGT  600

seq1  GATGGTGCTCGTCCTTACAGCTGGACTAATTTGTTTCTGTGAATCTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCTCGTCCTTACAGCTGGACTAATTTGTTTCTGTGAATCTTCTA  650

seq1  TTCATTGGCTTACATTAGATGACTAAGATGGAGAAAACTATTCTGTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGCTTACATTAGATGACTAAGATGGAGAAAACTATTCTGTGTAC  700

seq1  TGGGGACCAGGTCCCGTGTTGCCCGGAACTCATGTCTTCTTCAGCTTACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCAGGTCCCGTGTTGCCCGGAACTCATGTCTTCTTCAGCTTACG  750

seq1  GCGTAGGAAATAGCTGAGAGCCCTGAGTTTGTTTGGCTTGGGCCCCTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGGAAATAGCTGAGAGCCCTGAGTTTGTTTGGCTTGGGCCCCTGAC  800

seq1  CATCTCACC-TTTCCCCTTTCATTGAGAAAACAACCCATCTTAAATATCA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACCTTTTCCCCTTTCATTGAGAAAACAACCCATCTTAAATATCA  850

seq1  TAGCAAAGCTGGGGATGGTGATGCCTGCCTTTAATCCTGACATTCTAGAG  899
      |||||||||||||||| |||||||||||||||| || |||||||||||| 
seq2  TAGCAAAGCTGGGGATTGTGATGCCTGCCTTTATTCTTGACATTCTAGA-  899

seq1  GTAGAAGAAGATTGAGGCTAGCCCCATCTACAAAGCACCCGAGCCAGCTA  949
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  GTAGAAGAAGATTGAAGCTAG-CCCATCTACAAAGCACCCGAGCCAGCTA  948

seq1  CCACTAC  956
      |||||||
seq2  CCACTAC  955