BAC Information

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BAC

Clone NameB6Ng01-107N18
Chromosome8 (Build37)
Map Location 63,767,355 - 63,916,117
singlet/doubletdoublet
Overlap geneSh3rf1, EG664975
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
Downstream geneCbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N18.bB6Ng01-107N18.g
ACCDH915202DH915203
length1,0391,068
definitionDH915202|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N18, 5' end.DH915203|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,915,082 - 63,916,117)(63,767,355 - 63,768,438)
sequence
gaattcacatcctgttctctaactctcatcctggtgcaatgagtggggag
ggagcagcaatgttccggggccttgacccctgaaagctggatttgcatct
taatgctccacttgttttttcctctgctttggaaagaaggtcctgggcat
ggcgggcaggacatggccttcttcctcgattctgcatgagttgtggatca
agatgagacatgaagaagcagctgaaggtcgtctgtctgctgcagctctg
agatgtgatcacttgacagagctgaggagagaagggactgggacagcact
gccaggtgtttctcaggtgtggaaacaggccagggcttcctttccgtgaa
gcaatggaacaaccgtctggcttagcatccatgagtgaatcaacacagac
agtagactcttcagcagcattcggcattttccattcttgcaggattagca
aacattcaaattcctagcgattgacaaaccttttgttgactctggattct
aagaagagaaaataacctttgaccttaagttgttaagagagttgggcata
tgcaaagtgtctctttatgtctgtgtgtgtgtaaatatatatatgaggac
ttttcattatggaacatctgtgaagacagaatgtgattctgatactgtgc
tgtcaatggaacagaacgggggctggggggggggaggcataacatatata
aagaaatgcaaatgaggctcactagttagcatggggaggggagatccacg
ttaacctgatctttgcagttgctaaaaacctgacagggaaatctgaattt
taacctgctgctaagacactgttggttattcatgtgtgaccggaaagaag
ggcaagctttaaattttctccttgtcagttttcaacagggaggctgtcaa
tcctgcaagcgtagcttactgtaccatataaagaagggcagcagccagcc
tcagatgacatgcagcccaggacagtctggtgcatctacgtctcatcagc
cctgccctgttaacttggtttcttgatggtccagactgg
gaattctcccagtgaccttatgagatgccttttcatttttgagacgggca
aaccagacctggagaacattggctactatgtaactcacagccagtggagc
cgggccctgaacccaaattgatcttaaccattagtggcatttgcagtttt
gaccaggatcctggccactcggttttccccacttgcctgcagtgatggat
ggagagcgttgaacttgagacctcgtcctgagcactcggaacagtaagct
ttggtgcactttggaaagaataaaatcaacaaactggctcagctgggaga
tgggagctgtgggagaaggcagcagtgttttctctctgacatcacaggaa
gttaccatggaaatgattatggtattatgaatacaaaattataactttga
gcaggaaataagctgcccgaggaagcagaacaccgaggaacagcaacatc
gttgtcatgaaaatgtcttttaggttttagatgaacaaatttagcaacat
gaggtctgaatgcctggtctctttcaacattcccgaaacatcagtgttaa
attattcttttaactctcttggttttgttcctactttcaggacttgttga
aagtaaaacaactcccatgtgtgcatgtgtgtttgtagtttagcaaatat
tgttttttaaagatcctccttgcctcagcccccgttaaatccctccttca
aaatgttcccagtggagataaactgtttcctggcctttccatcaacagat
tcacttcagaaggagttagggctggcatttgttaattgccaaggccaact
gtagcaattggaggggaagggtagataataaaaacccaaatataacaaga
acgtcagttcccaatttcatgatccccattactctttatgaaatgtaatg
cttccaaaaatgtttgtttagaaatgctgatcatattttaagcttccaca
gaagatgtttcagctgccagccatcagaagtgcaacgtgctagattagag
tcacattttcttattgttgaggtgatgctttatttgttgtttgtctgcct
ggttcttcttgcacacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63915082_63916117
seq2: B6Ng01-107N18.b_46_1084 (reverse)

seq1  CCAGTCAGGACAATCAAGAA--CAAG-TAACAGGGGCAGGGCTGACTGAG  47
      |||||| |||| ||||||||  |||| ||||| |||||||||||| ||||
seq2  CCAGTCTGGACCATCAAGAAACCAAGTTAACA-GGGCAGGGCTGA-TGAG  48

seq1  ACGT-GATGGCACAG-CTGTCCTGGGCTGCATGTCATCTTGAGGCTGGCT  95
      |||| ||||   ||| |||||||||||||||||||||| |||||||||||
seq2  ACGTAGATGCACCAGACTGTCCTGGGCTGCATGTCATC-TGAGGCTGGCT  97

seq1  GCTGCCCTTCTTTAATAT-GTTCAGT-AGCTACGCTTGCTGGATTGACAG  143
      ||||||||||||| |||| || |||| |||||||||||| ||||||||||
seq2  GCTGCCCTTCTTT-ATATGGTACAGTAAGCTACGCTTGCAGGATTGACAG  146

seq1  CCTCCCTGTTGAAAACTGACAAGGAGAAAA-TTAAAGCTTGCCCTTCTTT  192
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCCCTGTTGAAAACTGACAAGGAGAAAATTTAAAGCTTGCCCTTCTTT  196

seq1  CCGGTCACACATGAATAACCAACAGTGTCTTAGCAGCAGGTTAAAATTCA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCACACATGAATAACCAACAGTGTCTTAGCAGCAGGTTAAAATTCA  246

seq1  GATTTCCCTTGTCAGGTTTTTAGCAACTGCAAAGATCAGGTTAACGTGGA  292
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCC-TGTCAGGTTTTTAGCAACTGCAAAGATCAGGTTAACGTGGA  295

seq1  TCTCCCCTCCCCATGCTAACTAGTGAGCCTCATTTGCATTTCTTTATATA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCCCCATGCTAACTAGTGAGCCTCATTTGCATTTCTTTATATA  345

seq1  TGTTATGCCTCCCCCCCCCCAGCCCCCGTTCTGTTCCATTGACAGCACAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGCCTCCCCCCCCCCAGCCCCCGTTCTGTTCCATTGACAGCACAG  395

seq1  TATCAGAATCACATTCTGTCTTCACAGATGTTCCATAATGAAAAGTCCTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAATCACATTCTGTCTTCACAGATGTTCCATAATGAAAAGTCCTC  445

seq1  ATATATATATTTACACACACACAGACATAAAGAGACACTTTGCATATGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATTTACACACACACAGACATAAAGAGACACTTTGCATATGCC  495

seq1  CAACTCTCTTAACAACTTAAGGTCAAAGGTTATTTTCTCTTCTTAGAATC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCTTAACAACTTAAGGTCAAAGGTTATTTTCTCTTCTTAGAATC  545

seq1  CAGAGTCAACAAAAGGTTTGTCAATCGCTAGGAATTTGAATGTTTGCTAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAACAAAAGGTTTGTCAATCGCTAGGAATTTGAATGTTTGCTAA  595

seq1  TCCTGCAAGAATGGAAAATGCCGAATGCTGCTGAAGAGTCTACTGTCTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAGAATGGAAAATGCCGAATGCTGCTGAAGAGTCTACTGTCTGT  645

seq1  GTTGATTCACTCATGGATGCTAAGCCAGACGGTTGTTCCATTGCTTCACG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTCACTCATGGATGCTAAGCCAGACGGTTGTTCCATTGCTTCACG  695

seq1  GAAAGGAAGCCCTGGCCTGTTTCCACACCTGAGAAACACCTGGCAGTGCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGCCCTGGCCTGTTTCCACACCTGAGAAACACCTGGCAGTGCT  745

seq1  GTCCCAGTCCCTTCTCTCCTCAGCTCTGTCAAGTGATCACATCTCAGAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTCCCTTCTCTCCTCAGCTCTGTCAAGTGATCACATCTCAGAGC  795

seq1  TGCAGCAGACAGACGACCTTCAGCTGCTTCTTCATGTCTCATCTTGATCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGACAGACGACCTTCAGCTGCTTCTTCATGTCTCATCTTGATCC  845

seq1  ACAACTCATGCAGAATCGAGGAAGAAGGCCATGTCCTGCCCGCCATGCCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCATGCAGAATCGAGGAAGAAGGCCATGTCCTGCCCGCCATGCCC  895

seq1  AGGACCTTCTTTCCAAAGCAGAGGAAAAAACAAGTGGAGCATTAAGATGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCTTTCCAAAGCAGAGGAAAAAACAAGTGGAGCATTAAGATGC  945

seq1  AAATCCAGCTTTCAGGGGTCAAGGCCCCGGAACATTGCTGCTCCCTCCCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGCTTTCAGGGGTCAAGGCCCCGGAACATTGCTGCTCCCTCCCC  995

seq1  ACTCATTGCACCAGGATGAGAGTTAGAGAACAGGATGTGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGCACCAGGATGAGAGTTAGAGAACAGGATGTGAATTC  1039

seq1: chr8_63767355_63768438
seq2: B6Ng01-107N18.g_66_1133

seq1  GAATTCTCCCAGTGACCTTATGAGATGCCTTTTCATTTTTGAGACGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAGTGACCTTATGAGATGCCTTTTCATTTTTGAGACGGGCA  50

seq1  AACCAGACCTGGAGAACATTGGCTACTATGTAACTCACAGCCAGTGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACCTGGAGAACATTGGCTACTATGTAACTCACAGCCAGTGGAGC  100

seq1  CGGGCCCTGAACCCAAATTGATCTTAACCATTAGTGGCATTTGCAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCCTGAACCCAAATTGATCTTAACCATTAGTGGCATTTGCAGTTTT  150

seq1  GACCAGGATCCTGGCCACTCGGTTTTCCCCACTTGCCTGCAGTGATGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGATCCTGGCCACTCGGTTTTCCCCACTTGCCTGCAGTGATGGAT  200

seq1  GGAGAGCGTTGAACTTGAGACCTCGTCCTGAGCACTCGGAACAGTAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCGTTGAACTTGAGACCTCGTCCTGAGCACTCGGAACAGTAAGCT  250

seq1  TTGGTGCACTTTGGAAAGAATAAAATCAACAAACTGGCTCAGCTGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCACTTTGGAAAGAATAAAATCAACAAACTGGCTCAGCTGGGAGA  300

seq1  TGGGAGCTGTGGGAGAAGGCAGCAGTGTTTTCTCTCTGACATCACAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTGTGGGAGAAGGCAGCAGTGTTTTCTCTCTGACATCACAGGAA  350

seq1  GTTACCATGGAAATGATTATGGTATTATGAATACAAAATTATAACTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATGGAAATGATTATGGTATTATGAATACAAAATTATAACTTTGA  400

seq1  GCAGGAAATAAGCTGCCCGAGGAAGCAGAACACCGAGGAACAGCAACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAATAAGCTGCCCGAGGAAGCAGAACACCGAGGAACAGCAACATC  450

seq1  GTTGTCATGAAAATGTCTTTTAGGTTTTAGATGAACAAATTTAGCAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATGAAAATGTCTTTTAGGTTTTAGATGAACAAATTTAGCAACAT  500

seq1  GAGGTCTGAATGCCTGGTCTCTTTCAACATTCCCGAAACATCAGTGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGAATGCCTGGTCTCTTTCAACATTCCCGAAACATCAGTGTTAA  550

seq1  ATTATTCTTTTAACTCTCTTGGTTTTGTTCCTACTTTCAGGACTTGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTTTAACTCTCTTGGTTTTGTTCCTACTTTCAGGACTTGTTGA  600

seq1  AAGTAAAACAACTCCCATGTGTGCATGTGTGTTTGTAGTTTAGCAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAACAACTCCCATGTGTGCATGTGTGTTTGTAGTTTAGCAAATAT  650

seq1  TGTTTTTTAAAGATCCTCCTTGCCTCAGCCCCCGTTAAATCCCTCCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTAAAGATCCTCCTTGCCTCAGCCCCCGTTAAATCCCTCCTTCA  700

seq1  AAATGTTCCCAGTGGAGATAAACTGTTTCCTGGCCTTTCCATCAACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCCCAGTGGAGATAAACTGTTTCCTGGCCTTTCCATCAACAGAT  750

seq1  TCACTTCAGAAGGAGTTAGGGCTGGCATTTGTTAATTGCCAAGGCCAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCAGAAGGAGTTAGGGCTGGCATTTGTTAATTGCCAAGGCCAACT  800

seq1  GTAGCAATTGGAGGGGAAGGGTAGATAATAAAAACCCAAATATAACAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAATTGGAGGGGAAGGGTAGATAATAAAAACCCAAATATAACAAGA  850

seq1  ACGTCAGTTCCCAATTTCATGATCCCCATTACTCTTTATGAAATGTAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGTTCCCAATTTCATGATCCCCATTACTCTTTATGAAATGTAATG  900

seq1  CTTTCCAAAAATGTTTGTTTAGAAAATGCTGATCATATTTTAAAGCTTTC  950
      | |||||||||||||||||||| |||||||||||||||||| |||| |||
seq2  C-TTCCAAAAATGTTTGTTTAG-AAATGCTGATCATATTTT-AAGC-TTC  946

seq1  CACAGGAAAGATGTTTCAGGCTGCCAGCCATCAGAAGTGGCAACGTGCTA  1000
      |||||  ||||||||||| ||||||||||||||||||| |||||||||||
seq2  CACAG--AAGATGTTTCA-GCTGCCAGCCATCAGAAGT-GCAACGTGCTA  992

seq1  GATTAGAGTCCACCATTTTCTTATGTTTGGAAGTGTGATGCTTTTATTTG  1050
      ||||||||||   |||||||||||  |||  || ||||||| ||||||||
seq2  GATTAGAGTC--ACATTTTCTTATTGTTG--AG-GTGATGC-TTTATTTG  1036

seq1  TTTGTTTGTCTGCCTGGTTCTTTCTTGCACACGC  1084
       ||||||||||||||||||| |||||||||||||
seq2  -TTGTTTGTCTGCCTGGTTC-TTCTTGCACACGC  1068