BAC Information

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BAC

Clone NameB6Ng01-108G14
Chromosome8 (Build37)
Map Location 124,201,355 - 124,355,905
singlet/doubletdoublet
Overlap geneJph3, Klhdc4
Upstream geneIrf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14
Downstream geneSlc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108G14.bB6Ng01-108G14.g
ACCDH915604DH915605
length954861
definitionDH915604|Mus musculus domesticus DNA, BAC clone: B6Ng01-108G14, 5' end.DH915605|Mus musculus domesticus DNA, BAC clone: B6Ng01-108G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,201,355 - 124,202,315)(124,355,046 - 124,355,905)
sequence
gaattccaggctagcctgatctacatagtgagttccaggacagccagggc
aatgtagagagaccttgactcaaacaaggactgattttttaaaatcactt
ttgatcatacgtatgcctccacatgtacacttgtgtacaatgcctgggaa
gccagaggtgtgggatctctctgaagctggagttataggtggttgtgaac
cacccagtgtgggtgctaggaactgaacctgggtcctctggaagaacagc
aagtgctcttaaccaatgaaccgtcatctctctagccctcctgccctgcc
atggcttttaaaaaatacttcaagatgatgcttgctttattttgaaatga
aattcacagataacatatctgtgggaccggagagatggcctttcagttaa
gaacactggctgctcttccaaaagactcaggtttgattcccagcccccac
atggcagcacatggccatctgtaagtccagtcccaggggatctgaggccc
tcttctggtctctaaggacacagtgcacagacatgcatgcaggcaaaaca
ttcatgcatataaaaataaataatattttttaaaagttctcttcacttgc
acactaaaaacaatgcagtgcctcatgtgtatcttaaaggagacccagta
acaatgaaataatggaaatttacaaaaatatttgagtctgacctctcaaa
caacatggtggatgcttgtgacccagtggcccagcctggtgtatgtgtgt
gtcacagggagacccagagaccatggcagccttgctgcaggacaaggtca
gtaaatttccaggcaaagaaaggtgctcccgtgatcacagggtgaacaac
ttcctaggacattcaagctgtatgataagcatggaaagataagtaaatcc
ttgcagaccctttattacaagcagagctttggatgctggagggtatggag
ggac
gaattctctcctccaggcatgatatttctgtctctatcttgaaatcagag
ctgttttggctgggcagtgtggctcatgcctttagtcacagcacttggga
ggtcactgaatatctgagttcaaggctagcctagtctaaagagagggttt
cagaacagccagggatacacagaaaaacctgtcgtaaaaaaacaaaaaca
aaaacaaacaacagccaaaaaagaaaataggggagggaggaaataaatca
aagcagttttattctgtgtctttcctagtaatgaaaattttaacctctgg
tgaatcactgtgacctgtattaagagcttcccaatttagctttgagattc
tttcagataataaaagcattaatccctgcaacttccagatctttctaaat
cttccgcagaggatatactttccctttcagccctgaagaaggaacagtgc
tatatattgcgaacagtggagaatgttaatagcctcttacaacattgggt
cttttcattttctcctgcagaaggaaggggcgaccacagactctcactag
agactccaaccgctcctcgctcagccgcctcagctgccaggagcttagtg
ccaggctgtacaggaggtgggaggtggcttgggtaccagtgatacaatgt
ttataaattcctcatccacccatgctaggtgagacgtttatgagacgtgg
ctgccttcgagtcacctgtgctcctgtaaatcaaaacaaacaactcagta
cttcaacaagctactgagtccaagctactggactttggaataatttcttt
ggtcttttagatctctctctctctctctctctctctctcttgtatctatc
tatgtatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_124201355_124202315
seq2: B6Ng01-108G14.b_42_995

seq1  GAATTCCAGGCTAGCCTGATCTACATAGTGAGTTCCAGGACAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTAGCCTGATCTACATAGTGAGTTCCAGGACAGCCAGGGC  50

seq1  AATGTAGAGAGACCTTGACTCAAACAAGGACTGATTTTTTAAAATCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGAGAGACCTTGACTCAAACAAGGACTGATTTTTTAAAATCACTT  100

seq1  TTGATCATACGTATGCCTCCACATGTACACTTGTGTACAATGCCTGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCATACGTATGCCTCCACATGTACACTTGTGTACAATGCCTGGGAA  150

seq1  GCCAGAGGTGTGGGATCTCTCTGAAGCTGGAGTTATAGGTGGTTGTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGTGTGGGATCTCTCTGAAGCTGGAGTTATAGGTGGTTGTGAAC  200

seq1  CACCCAGTGTGGGTGCTAGGAACTGAACCTGGGTCCTCTGGAAGAACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGTGGGTGCTAGGAACTGAACCTGGGTCCTCTGGAAGAACAGC  250

seq1  AAGTGCTCTTAACCAATGAACCGTCATCTCTCTAGCCCTCCTGCCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTCTTAACCAATGAACCGTCATCTCTCTAGCCCTCCTGCCCTGCC  300

seq1  ATGGCTTTTAAAAAATACTTCAAGATGATGCTTGCTTTATTTTGAAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTTAAAAAATACTTCAAGATGATGCTTGCTTTATTTTGAAATGA  350

seq1  AATTCACAGATAACATATCTGTGGGACCGGAGAGATGGCCTTTCAGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGATAACATATCTGTGGGACCGGAGAGATGGCCTTTCAGTTAA  400

seq1  GAACACTGGCTGCTCTTCCAAAAGACTCAGGTTTGATTCCCAGCCCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGGCTGCTCTTCCAAAAGACTCAGGTTTGATTCCCAGCCCCCAC  450

seq1  ATGGCAGCACATGGCCATCTGTAAGTCCAGTCCCAGGGGATCTGAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCACATGGCCATCTGTAAGTCCAGTCCCAGGGGATCTGAGGCCC  500

seq1  TCTTCTGGTCTCTAAGGACACAGTGCACAGACATGCATGCAGGCAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTCTCTAAGGACACAGTGCACAGACATGCATGCAGGCAAAACA  550

seq1  TTCATGCATATAAAAATAAATAATATTTTTTAAAAGTTCTCTTCACTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCATATAAAAATAAATAATATTTTTTAAAAGTTCTCTTCACTTGC  600

seq1  ACACTAAAAACAATGCAGTGCCTCATGTGTATCTTAAAGGAGACCCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAAACAATGCAGTGCCTCATGTGTATCTTAAAGGAGACCCAGTA  650

seq1  ACAATGAAATAATGGAAATTTACAAAAATATTTGAGTCTGACCTCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAATAATGGAAATTTACAAAAATATTTGAGTCTGACCTCTCAAA  700

seq1  CAACATGGTGGATGCTTGTGACCCAGTGGCCCAGCCTGGTGTATGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGTGGATGCTTGTGACCCAGTGGCCCAGCCTGGTGTATGTGTGT  750

seq1  GTCACAGGGAGACCCAGAGACCATGGCAGCCTTGCTGCAGGACAAGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGGAGACCCAGAGACCATGGCAGCCTTGCTGCAGGACAAGGTCA  800

seq1  GTAAATTTCCAGGCAAAAGAAAGGTGCTCCCGTGATCACAGGGTGAACAA  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAAATTTCCAGGC-AAAGAAAGGTGCTCCCGTGATCACAGGGTGAACAA  849

seq1  CTTCCTAGGACATTCAAGCTGTATGATAAGCATGGAAAAGATAAAAGTCA  900
      ||||||||||||||||||||||||||||||||||| ||||||  |||| |
seq2  CTTCCTAGGACATTCAAGCTGTATGATAAGCATGG-AAAGAT--AAGT-A  895

seq1  AATCCTTGCAGACCCTTTATTTACAAGCAGAGCTTTGGATTGCTGGAGGG  950
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AATCCTTGCAGACCCTTTA-TTACAAGCAGAGCTTTGGA-TGCTGGAGGG  943

seq1  TATGGAGGGAC  961
      |||||||||||
seq2  TATGGAGGGAC  954

seq1: chr8_124355046_124355905
seq2: B6Ng01-108G14.g_69_929 (reverse)

seq1  ATAGATACATAGATAGATACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACATAGATAGATACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  TCTAAAAGACCAAAGAAATTATTCC-AAGTCCAGTAGCTTGGACTCAGTA  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTAAAAGACCAAAGAAATTATTCCAAAGTCCAGTAGCTTGGACTCAGTA  100

seq1  GCTTGTTGAAGTACTGAGTTGTTTGTTTTGATTTACAGGAGCACAGGTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTGAAGTACTGAGTTGTTTGTTTTGATTTACAGGAGCACAGGTGA  150

seq1  CTCGAAGGCAGCCACGTCTCATAAACGTCTCACCTAGCATGGGTGGATGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGGCAGCCACGTCTCATAAACGTCTCACCTAGCATGGGTGGATGA  200

seq1  GGAATTTATAAACATTGTATCACTGGTACCCAAGCCACCTCCCACCTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTATAAACATTGTATCACTGGTACCCAAGCCACCTCCCACCTCCT  250

seq1  GTACAGCCTGGCACTAAGCTCCTGGCAGCTGAGGCGGCTGAGCGAGGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCCTGGCACTAAGCTCCTGGCAGCTGAGGCGGCTGAGCGAGGAGC  300

seq1  GGTTGGAGTCTCTAGTGAGAGTCTGTGGTCGCCCCTTCCTTCTGCAGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGTCTCTAGTGAGAGTCTGTGGTCGCCCCTTCCTTCTGCAGGAG  350

seq1  AAAATGAAAAGACCCAATGTTGTAAGAGGCTATTAACATTCTCCACTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAAGACCCAATGTTGTAAGAGGCTATTAACATTCTCCACTGTT  400

seq1  CGCAATATATAGCACTGTTCCTTCTTCAGGGCTGAAAGGGAAAGTATATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATATATAGCACTGTTCCTTCTTCAGGGCTGAAAGGGAAAGTATATC  450

seq1  CTCTGCGGAAGATTTAGAAAGATCTGGAAGTTGCAGGGATTAATGCTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCGGAAGATTTAGAAAGATCTGGAAGTTGCAGGGATTAATGCTTTT  500

seq1  ATTATCTGAAAGAATCTCAAAGCTAAATTGGGAAGCTCTTAATACAGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGAAAGAATCTCAAAGCTAAATTGGGAAGCTCTTAATACAGGTC  550

seq1  ACAGTGATTCACCAGAGGTTAAAATTTTCATTACTAGGAAAGACACAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATTCACCAGAGGTTAAAATTTTCATTACTAGGAAAGACACAGAA  600

seq1  TAAAACTGCTTTGATTTATTTCCTCCCTCCCCTATTTTCTTTTTTGGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGCTTTGATTTATTTCCTCCCTCCCCTATTTTCTTTTTTGGCTG  650

seq1  TTGTTTGTTTTTGTTTTTGTTTTTTTACGACAGGTTTTTCTGTGTATCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTGTTTTTGTTTTTTTACGACAGGTTTTTCTGTGTATCCC  700

seq1  TGGCTGTTCTGAAACCCTCTCTTTAGACTAGGCTAGCCTTGAACTCAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTCTGAAACCCTCTCTTTAGACTAGGCTAGCCTTGAACTCAGAT  750

seq1  ATTCAGTGACCTCCCAAGTGCTGTGACTAAAGGCATGAGCCACACTGCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGACCTCCCAAGTGCTGTGACTAAAGGCATGAGCCACACTGCCC  800

seq1  AGCCAAAACAGCTCTGATTTCAAGATAGAGACAGAAATATCATGCCTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAACAGCTCTGATTTCAAGATAGAGACAGAAATATCATGCCTGGA  850

seq1  GGAGAGAATTC  860
      |||||||||||
seq2  GGAGAGAATTC  861