BAC Information

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BAC

Clone NameB6Ng01-109A09
Chromosome8 (Build37)
Map Location 104,323,484 - 104,494,846
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A09.bB6Ng01-109A09.g
ACCDH916050DH916051
length1,0911,003
definitionDH916050|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A09, 5' end.DH916051|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,323,484 - 104,324,586)(104,494,297 - 104,494,846)
sequence
gaattcacaaactgtatacataaaagctgaagtactgaaaaatagcagtt
cttttgtttagaggctaccctggtctgagtccatgaatcagaatctgact
aaaacccatagtcttttttttttccattttttattaggtatttaactcat
ttacatttccaatgctataccaaaagtcccccatatccacccacccccac
tcccctgcccacccactccccctttttggccctggtattcccctgtactg
gggcatataaagtttgcaagtccaatgggcctctctttccagtgatggcc
gactaggccatcttttgatatatatgcagctagagtcaagagctccgggg
tactggttagctcataatgttgttccacctatagggttgcagatcccttt
agctccttggctactttctctagctcctccattgggagccctatgatcca
tccattagctgactgtgagcatccacttctgtgtttgctgggccccggca
tagtctcacaagagacagctacatctgcgtcctttcaataaaatcttgct
agtgtatgcaatggtgtcagcgtttggatgctgattatggggtggatccc
tggctatggcagtctctacatggtccatcctttcatctcagctccaaact
ccgtctctgtaactccttccatgggtgttttgttcccaaatctaaggagg
ggcatagtgtccacacttcagtcttcattctccttgagtttcatgtgttt
agcaaattatatcttatatcttgggtatcctagtttggggctaatatcca
cttatcagtgaatacatattgtgtgagtttctttgtgaatgtgttacctc
actcaggatgatgccctccaggtccatccatttggctaggatttcataaa
tttaaaaacccatagtcttatgttatactacaaatcaatcttcagtaagt
atagttactcagtagatcgctatgtagagtaatttagaatcgtgtgagtc
tgcatttctgttgttactaacagtacttcaggaaaaattgggatctattc
aatctcaatttctccttaagggggcggaacataaatatacc
gaattcaggagcaattagaatatgttaacctttgttgcttggtctttcct
cttgaaactttagctcacttttctttgttctcttggcttagtattttgat
tccacactgtttggtgttctgtgtgcttcttgtactttctttaggttagg
aaaattttcttctatgattttgttgaagatattttctatgcctttgggac
ctgggtatcttcttcttctatttctgttattattagatatgctcttttca
tagttgccagatttccttgaaattttatgctttttaaaaaagacaacatt
ttctttgaccaaggtattgatttattttatcttggcttcaacatctgaga
atatttcttctatgtcttgcatcctgtttatgacgtttgtctctgagggt
cctgtttgaatttctaaatttttcatttccagatctctgtgtgtggattt
tctttgttgattctattctcattttcaggtctttaactcttttcctcatt
tctttccactgtttgtgttttcatagattactttaaggactttattctgt
ttctatctaaatcactctgtcattttaataaaggctattttaaggtttta
gtcttgtgtatcacctatgataaaattcttacttcctgctgcagtaggtt
tgttgacctctaatgaagacatattaccttggatgttatagactgatggt
gtctacacttctgggtttggaaagattgcagttataggtgctgatagcct
gactagtctttgttggtctagtccttggtatctattgctctatctggttc
ttaggacaatgttataacttcatattgtttggtagaaaattttttcttga
atctgataaaggggccactggggttgatgggataatatgttcctgcttcc
ttgactgcagtgatttccagaaaatccttttctatgctttaagtggcact
gaaaaatttccatgaaaccacttgcactatgtatgattttggtcatccat
gta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104323484_104324586
seq2: B6Ng01-109A09.b_50_1140

seq1  GAATTCACAAACTGTATACATAAAAGCTGAAGTACTGAAAAATAGCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAACTGTATACATAAAAGCTGAAGTACTGAAAAATAGCAGTT  50

seq1  CTTTTGTTTAGAGGCTACCCTGGTCTGAGTCCATGAATCAGAATCTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTAGAGGCTACCCTGGTCTGAGTCCATGAATCAGAATCTGACT  100

seq1  AAAACCCATAGTCTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCATAGTCTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCAT  150

seq1  TTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCAC  200

seq1  TCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTG  250

seq1  GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  300

seq1  GACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGG  350

seq1  TACTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTT  400

seq1  AGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCA  450

seq1  TCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCA  500

seq1  TAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTCAATAAAATCTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTCAATAAAATCTTGCT  550

seq1  AGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCC  600

seq1  TGGCTATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCTCCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCTCCAAACT  650

seq1  CCGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATCTAAGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATCTAAGGAGG  700

seq1  GGCATAGTGTCCACACTTCAGTCTTCATTCTCCTTGAGTTTCATGTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGTGTCCACACTTCAGTCTTCATTCTCCTTGAGTTTCATGTGTTT  750

seq1  AGCAAATTATATCTTATATCTTGGGTATCCTAGGTTTGGGGCTAATATCC  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCAAATTATATCTTATATCTTGGGTATCCTA-GTTTGGGGCTAATATCC  799

seq1  ACTTATCAGTGAATACATATTGTGTGAGTTTCTTTGTGAATGTGTTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCAGTGAATACATATTGTGTGAGTTTCTTTGTGAATGTGTTACCT  849

seq1  CACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGG-ATTTCATA  898

seq1  AATTTAAAAAACCCATAGTCTTATGTTATACTACAAATCAATCTTCAGGT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTT-AAAAACCCATAGTCTTATGTTATACTACAAATCAATCTTCA-GT  946

seq1  AAGTATAGTTACTCAGTAGATCGCTATGTAAGAGTTAATTTAGAATAGTT  1000
      ||||||||||||||||||||||||||||| |||| ||||||||||| || 
seq2  AAGTATAGTTACTCAGTAGATCGCTATGT-AGAG-TAATTTAGAATCGTG  994

seq1  GGAGTCTGCATTTTGGGTTTGTTACTAACAGTACTTCAGGAAAATATGTG  1050
       ||||||||||||  |  |||||||||||||||||||||||||| ||  |
seq2  TGAGTCTGCATTTCTG--TTGTTACTAACAGTACTTCAGGAAAA-ATTGG  1041

seq1  GATTCATATCAATCTCAATTTCATCTTAAGGGGGCGGAAACATTAAATAT  1100
      |||  || ||||||||||||||  ||||||||||||| |||| |||||||
seq2  GATCTAT-TCAATCTCAATTTCTCCTTAAGGGGGCGG-AACA-TAAATAT  1088

seq1  ACC  1103
      |||
seq2  ACC  1091

seq1: chr8_104494297_104494846
seq2: B6Ng01-109A09.g_524_1067 (reverse)

seq1  TACATGGATGTACCAAAAATCATACATATGTGCAAGTGGTTTCATGGAAA  50
      |||||||||| ||| ||||||||||||| |||||||||||||||||||||
seq2  TACATGGATG-ACC-AAAATCATACATA-GTGCAAGTGGTTTCATGGAAA  47

seq1  TATTTCAGTTGCACCTAAAGCATAGAAAAGGATTTTCTGGAAATCACTGC  100
      | |||||||  ||| |||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGTGCCACTTAAAGCATAGAAAAGGATTTTCTGGAAATCACTGC  97

seq1  AGTCAAGGAAGCAGGAACATATTATACCCATCAACCACAGTGGCCACCTT  150
      ||||||||||||||||||||||||| |||||||||| |||||||| ||||
seq2  AGTCAAGGAAGCAGGAACATATTAT-CCCATCAACCCCAGTGGCC-CCTT  145

seq1  TATCAGAATTCAAGAAAAAATTTTCTACCAAACAATATGAAGTTATAACA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAG-ATTCAAGAAAAAATTTTCTACCAAACAATATGAAGTTATAACA  194

seq1  TTGTCCTAAGAACCAGATAGAGCAATAGATACCAAGGACTAGACCAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTAAGAACCAGATAGAGCAATAGATACCAAGGACTAGACCAACAA  244

seq1  AGACTAGTCAGGCTATCAGCACCTATAACTGCAATCTTTCCAAACCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTCAGGCTATCAGCACCTATAACTGCAATCTTTCCAAACCCAGA  294

seq1  AGTGTAGACACCATCAGTCTATAACATCCAAGGTAATATGTCTTCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGACACCATCAGTCTATAACATCCAAGGTAATATGTCTTCATTAG  344

seq1  AGGTCAACAAACCTACTGCAGCAGGAAGTAAGAATTTTATCATAGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAACAAACCTACTGCAGCAGGAAGTAAGAATTTTATCATAGGTGAT  394

seq1  ACACAAGACTAAAACCTTAAAATAGCCTTTATTAAAATGACAGAGTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGACTAAAACCTTAAAATAGCCTTTATTAAAATGACAGAGTGATT  444

seq1  TAGATAGAAACAGAATAAAGTCCTTAAAGTAATCTATGAAAACACAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGAAACAGAATAAAGTCCTTAAAGTAATCTATGAAAACACAAACA  494

seq1  GTGGAAAGAAATGAGGAAAAGAGTTAAAGACCTGAAAATGAGAATAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGAAATGAGGAAAAGAGTTAAAGACCTGAAAATGAGAATAGAAT  544