BAC Information

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BAC

Clone NameB6Ng01-109G07
Chromosome8 (Build37)
Map Location 126,032,019 - 126,182,003
singlet/doubletdoublet
Overlap geneDbndd1, Gas8, Rn5s-ps1, Rhou
Upstream geneCdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1
Downstream geneLOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109G07.bB6Ng01-109G07.g
ACCDH916314DH916315
length1,034998
definitionDH916314|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G07, 5' end.DH916315|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,180,949 - 126,182,003)(126,032,019 - 126,033,020)
sequence
gaattctgggtatgtttgtctcagcacagctactgctggggttctggctc
atagggctgccagggatacccacccacactcacgccccatgccctggcta
acctgcattccccttccttctcctgaccacaggagaaaggtatccctttg
tcaacatgaaggtgccatgccagctctctcaacaagtgggctgacgagca
gcagcagcaaaggttgaatagctctggtccactctgctccagtcaaaaca
aacgcttgtgtatccgccccctctcaaatccacagcctctttttctttaa
tgactgttgcatgtgtgtgtgtgtatgtatgtatgaataaatatgtaaat
aaattttagacaggatctcactgtagagtgaggtccaggatagccttgaa
ctccctgcagcccgggcagacctgatgcttgtgatcctcttgcccctgtg
tcccaaacgctccccggctctttggagactataggaagggaacatcgaac
tcctgtttagaaatgctgtttagaaatacgagttttccaacgtatcgatc
ccctctcaagcacccacggccaaggcttttctctgcactgggctgttctc
ctttgagctcagaactggtctactgaccccaggtctgcagcaggcaagcc
cacagccgtccacaggctgatggctcacacattctgatttcaagaactaa
aaccacatggaaccctgagatgtatcagactccaacccaggactcatctt
cccgagggaagttcacctcctcagaagccaagtagagacatctgaggggg
tggcaagtgattcctgagccagcatcctagcagctcctactggagtccat
gatgactgtgtttgaagctctttgggcttcctgcttctctgtgatcctcg
gggtgctacagcactacagatttcgtccgtgttctcagatgggaaagccc
acctctccctctttaaacaatgcaaggacatcatgcaaagagaagaccca
gactgtttcttatgttccttgctgtggtttttta
gaattctctctctgcctcccaagtactgggatcaaacatgaacaactaac
attcgatgacaccatgtctatgtaagacagagtttctttgtagttctggt
tgttctagagctcacccgaagatcaggctggccttaaacttggagacttg
cctgtttcggcctcccaagtgctgggattaaaggtatgtgtcactgctac
ctggctgagaccatgtctttaaaaagaaaagaacactgagccaggcatgt
tagtgtaagcctttattcccaactcccaggaggcagaggcaggcaggtct
ccaagtttaaggacagccagggctacacagaaaccctatttcaaaaagca
aaaacaagctgggcagtggtgacgcacgccattaatcccagcacttggga
ggcagaggcaggtagatttctgagttcgaggccagcctggtctacaaagt
gagttccaggacagccagggctacacagagaaaccctgtctcagaaaaca
aaacaaacaaaatggaaggactgaagcatttgcggcaaaccttgtgttct
ggccacaggggttacaacatatcctgctgacatggggcttaggagaggat
ggaaggatggaagactggggtctcacccacacagcccactccagatgata
gcacctcctcctctcctgaggagaagccactcaagtggtgaggggcccag
gttggtggctgcccccgccttgtgcttagcttaacttaaagtccacactt
tataagttatatttttcatttggctcaattgtagaagtcgagggaagtag
ataggggcatagcaatgcaaaagtatgagcaaggacaagtactatacaca
gttgggtaaaatggtgtctttctaagtagggatctgagggaccagagccc
caggacatcccagaagcaccccttttatgccttttttccctcaagccagc
gtgcagcccacttgctggtgactcatggtcaaggtttcgtcatcggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_126180949_126182003
seq2: B6Ng01-109G07.b_47_1080 (reverse)

seq1  TAAAAAACATGCCAGCAAAGGAAAACATCAAAGAAACAGTCTTGGGTCTT  50
      ||||||||    |||||| |   |||||  ||||||||||| ||||||| 
seq2  TAAAAAAC--CACAGCAAGG---AACAT--AAGAAACAGTC-TGGGTCT-  41

seq1  TCTCTTTTTGCATGATGTCCTCTGCATTGTTTTATATAGATGGAAGAGGC  100
        ||| ||||||||||||||| |||||||||   || ||| || ||||| 
seq2  --TCTCTTTGCATGATGTCCT-TGCATTGTT---TAAAGA-GGGAGAGG-  83

seq1  TGGGCTTTCCCATCTGTAGAACACGGACAGAAATCTGTAGTTGCTGTAGG  150
      |||||||||||||||| ||||||||||| ||||||||||| ||||||| |
seq2  TGGGCTTTCCCATCTG-AGAACACGGAC-GAAATCTGTAG-TGCTGTA-G  129

seq1  CACCCCGAGGATCACAGAGAAGGCAGGAAGCCCAAAGAGCCTCAAGACAC  200
      ||||||||||||||||||||| |||||||||||||||||| |||| ||||
seq2  CACCCCGAGGATCACAGAGAA-GCAGGAAGCCCAAAGAGCTTCAA-ACAC  177

seq1  AGTCATCATGGACTCCAGTAAGGAGCTGCTAGGATGCTGGCTCAGGAATC  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTCATCATGGACTCCAGT-AGGAGCTGCTAGGATGCTGGCTCAGGAATC  226

seq1  ACTTTGCCA-CCCCTCAGATGTCTCTACTTGGCTTCTGAGGAGGTGAACT  299
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AC-TTGCCACCCCCTCAGATGTCTCTACTTGGCTTCTGAGGAGGTGAACT  275

seq1  TCCCTC-GGAAGATGAGTCCTGGGTTGGAGTCTGATACATCTCAGGGTTC  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCGGGAAGATGAGTCCTGGGTTGGAGTCTGATACATCTCAGGGTTC  325

seq1  CATGTGGTTTTAGTTCTTG-AATCAGAATGTGTGAGCCATCAGCCTGTGG  397
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGTGGTTTTAGTTCTTGAAATCAGAATGTGTGAGCCATCAGCCTGTGG  375

seq1  ACGGCTGTGGGCTTGCCTGCTGCAGACCTGGGGTCAGTAGACCAGTTCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTGTGGGCTTGCCTGCTGCAGACCTGGGGTCAGTAGACCAGTTCTG  425

seq1  AGCTC-AAGGAGAACAGCCCAGTGCAGAGAAAAGCCTTGGCCGTGGGTGC  496
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAGGAGAACAGCCCAGTGCAGAGAAAAGCCTTGGCCGTGGGTGC  475

seq1  TTGAGAGGGGATCGATACGTTGGAAAACTCGTATTTCTAAACAGCATTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGGGATCGATACGTTGGAAAACTCGTATTTCTAAACAGCATTTC  525

seq1  TAAACAGGAGTTCGATGTTCCCTTCCTATAGTCTCCAAAGAGCCGGGGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGAGTTCGATGTTCCCTTCCTATAGTCTCCAAAGAGCCGGGGAG  575

seq1  CGTTTGGGACACAGGGGCAAGAGGATCACAAGCATCAGGTCTGCCCGGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGGACACAGGGGCAAGAGGATCACAAGCATCAGGTCTGCCCGGGC  625

seq1  TGCAGGGAGTTCAAGGCTATCCTGGACCTCACTCTACAGTGAGATCCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGAGTTCAAGGCTATCCTGGACCTCACTCTACAGTGAGATCCTGT  675

seq1  CTAAAATTTATTTACATATTTATTCATACATACATACACACACACACATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTATTTACATATTTATTCATACATACATACACACACACACATG  725

seq1  CAACAGTCATTAAAGAAAAAGAGGCTGTGGATTTGAGAGGGGGCGGATAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCATTAAAGAAAAAGAGGCTGTGGATTTGAGAGGGGGCGGATAC  775

seq1  ACAAGCGTTTGTTTTGACTGGAGCAGAGTGGACCAGAGCTATTCAACCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCGTTTGTTTTGACTGGAGCAGAGTGGACCAGAGCTATTCAACCTT  825

seq1  TGCTGCTGCTGCTCGTCAGCCCACTTGTTGAGAGAGCTGGCATGGCACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGCTGCTCGTCAGCCCACTTGTTGAGAGAGCTGGCATGGCACCT  875

seq1  TCATGTTGACAAAGGGATACCTTTCTCCTGTGGTCAGGAGAAGGAAGGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTGACAAAGGGATACCTTTCTCCTGTGGTCAGGAGAAGGAAGGGG  925

seq1  AATGCAGGTTAGCCAGGGCATGGGGCGTGAGTGTGGGTGGGTATCCCTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGTTAGCCAGGGCATGGGGCGTGAGTGTGGGTGGGTATCCCTGG  975

seq1  CAGCCCTATGAGCCAGAACCCCAGCAGTAGCTGTGCTGAGACAAACATAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTATGAGCCAGAACCCCAGCAGTAGCTGTGCTGAGACAAACATAC  1025

seq1  CCAGAATTC  1055
      |||||||||
seq2  CCAGAATTC  1034

seq1: chr8_126032019_126033020
seq2: B6Ng01-109G07.g_69_1066

seq1  GAATTCTCTCTCTGCCTCCCAAGTACTGGGATCAAACATGAACAACTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTGCCTCCCAAGTACTGGGATCAAACATGAACAACTAAC  50

seq1  ATTCGATGACACCATGTCTATGTAAGACAGAGTTTCTTTGTAGTTCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGATGACACCATGTCTATGTAAGACAGAGTTTCTTTGTAGTTCTGGT  100

seq1  TGTTCTAGAGCTCACCCGAAGATCAGGCTGGCCTTAAACTTGGAGACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGAGCTCACCCGAAGATCAGGCTGGCCTTAAACTTGGAGACTTG  150

seq1  CCTGTTTCGGCCTCCCAAGTGCTGGGATTAAAGGTATGTGTCACTGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCGGCCTCCCAAGTGCTGGGATTAAAGGTATGTGTCACTGCTAC  200

seq1  CTGGCTGAGACCATGTCTTTAAAAAGAAAAGAACACTGAGCCAGGCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAGACCATGTCTTTAAAAAGAAAAGAACACTGAGCCAGGCATGT  250

seq1  TAGTGTAAGCCTTTATTCCCAACTCCCAGGAGGCAGAGGCAGGCAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAAGCCTTTATTCCCAACTCCCAGGAGGCAGAGGCAGGCAGGTCT  300

seq1  CTAAGTTTAAGGACAGCCAGGGCTACACAGAAACCCTATTTCAAAAAGCA  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTAAGGACAGCCAGGGCTACACAGAAACCCTATTTCAAAAAGCA  350

seq1  AAAACAAGCTGGGCAGTGGTGACGCACGCCATTAATCCCAGCACTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGCTGGGCAGTGGTGACGCACGCCATTAATCCCAGCACTTGGGA  400

seq1  GGCAGAGGCAGGTAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGTAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  450

seq1  GAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAAACA  500

seq1  AAACAAACAAAATGGAAGGACTGAAGCATTTGCGGCAAACCTTGTGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAATGGAAGGACTGAAGCATTTGCGGCAAACCTTGTGTTCT  550

seq1  GGCCACAGGGGTTACAACATATCCTGCTGACATGGGGCTTAGGAGAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGGGGTTACAACATATCCTGCTGACATGGGGCTTAGGAGAGGAT  600

seq1  GGAAGGATGGAAGACTGGGGTCTCACCCACACAGCCCACTCCAGATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATGGAAGACTGGGGTCTCACCCACACAGCCCACTCCAGATGATA  650

seq1  GCACCTCCTCCTCTCCTGAGGAGAAGCCACTCAAGTGGTGAGGGGCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCTCCTCTCCTGAGGAGAAGCCACTCAAGTGGTGAGGGGCCCAG  700

seq1  GTTGGTGGCTGCCCCCGCCTTGTGCTTAGCTTAACTTAAAGTCCACACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGCTGCCCCCGCCTTGTGCTTAGCTTAACTTAAAGTCCACACTT  750

seq1  AGTAAGTTATA-TTTTCATTTGGCTCAATTGTAGAAGTCGAGGGAAGGTA  799
        ||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  TATAAGTTATATTTTTCATTTGGCTCAATTGTAGAAGTCGAGGGAA-GTA  799

seq1  GATAGGGGCATAGCAATGC-AAAGTATGAGCAAGGACAAGTACTATACAC  848
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATAGGGGCATAGCAATGCAAAAGTATGAGCAAGGACAAGTACTATACAC  849

seq1  AGTTGGGTAAAAATGGTGTCTTTCTAAGTAGGGATCTGAGGGGACCAGGA  898
      |||||||| |||||||||||||||||||||||||||||| ||||||| ||
seq2  AGTTGGGT-AAAATGGTGTCTTTCTAAGTAGGGATCTGA-GGGACCA-GA  896

seq1  GCCCCAGGACATCCCCAGAGCACCCCCTTTATGCCTTTTTTCCCTCAAGC  948
      |||||||||||||||   |||||||| |||||||||||||||||||||||
seq2  GCCCCAGGACATCCCAGAAGCACCCCTTTTATGCCTTTTTTCCCTCAAGC  946

seq1  CAGCGTGCAGCCTCACCTGCTGGTGACTCAGTGGCAAGGTTTTCGTCATC  998
      |||||||||||| ||| |||||||||||||  | ||||| ||||||||||
seq2  CAGCGTGCAGCC-CACTTGCTGGTGACTCATGGTCAAGG-TTTCGTCATC  994

seq1  GGAG  1002
      ||||
seq2  GGAG  998