BAC Information

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BAC

Clone NameB6Ng01-110G10
Chromosome8 (Build37)
Map Location 125,274,236 - 125,393,920
singlet/doubletdoublet
Overlap geneC230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15
Upstream geneJph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h
Downstream geneAnkrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110G10.bB6Ng01-110G10.g
ACCDH917033DH917034
length8931,083
definitionDH917033|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G10, 5' end.DH917034|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,393,023 - 125,393,920)(125,274,236 - 125,275,334)
sequence
gaattccatggcaggaggtggctttgactgatggaatgacctggtcgttt
caggctaagggtcataccaaaagagaattgtccatcatgaggtgccctgg
cacggggctgtaagaactgtgagccagaagcagtcttagtggtccgggtg
aaagaaagggaaggggcagcaggccttttaagccaagctccagcctccct
accctcgggctaacacctacttcctgcctcacttccggtctcctttagaa
gccttgatctcacagccactgggctggacggaagttgtgcagtggccaca
tctccgtgagacctgtcaggggcgccaatacctgccctaactggccctgc
cctcccgtccaggaatcacctgagccctgtctgcttcacgagtgactgaa
cgttgaaataaacttgcctggcactacttgtttctttttcctttggacag
gggtcgggggtggtttctctgtgtagccctggctagcctgtagaccaggc
tagccttgaactcagaaatccgcctgcctctacttcctaagtgctgggat
taaaggcatgggccaccactgcctggcttggcctagcactacttatttta
ggcctgaagaggcagagacccagaaaagagagacaggagacccaggtcag
caaggaccttggcctctagagcagaaaagccctgagtccagcctgcctgg
tttctggagttgctcttgaaataacaaatcatgtatttaaaaataaataa
gaaagaacactcccatatacaacttatgagggtggcccccagaagctcat
atatttgaatggttcccaattggtgaactgttcgaaggattagaagctgt
ttttggagatgtgtgtcagtggggggggctttggggttcaaaa
gaattccaggctcagcatgggtcatggtaagcctgcagtttggagtcagg
aagcctgactgggcgtccctttgagtccttccagtgagaacacaggtttg
tcactttgcttccagctgacaatgaaccctctggccgtgtgtgcgccgtg
accatggcaggtctgtgccttcttgccttaacttttccaaatgccctgtg
ggcactcatctattcatccttagccctgtgcagagccacacgggactagc
ccatcccaggatttttaaaggaagcttgctcctcacaaggctttagccag
agtctgtctaaaggctgtaggccactgtggtggtgcctcccagtgctgta
agaagaggtctctggttggttaagcagtatgcatgcctggtagccctttc
caactgggctgcccatgggatatctacagcttagcctttgctgggctctg
aaccctccctggaaattctctctctccctccttcccaactgcctgttccg
gtccctgtgcctctcagtttctggaccatgctccttgatgtctttacctc
caggcccctccccattgcttctggggaggctcctctgctctgcttggctc
tcccaaccacactctccacagtcagaaagcctcgcccaacctgaccatgg
aggaagctgggcaccatggagctagcaccaaagctaatgtttttgcttac
ccaagtgaccagacctcgagagagacacctttctgggattaaagtgactt
cctagagcattacactggaacagagtggccccagtgacaatataaccgta
ctgatcctcttgctatcccaccagcctgaggcattgatcccggagcccct
tgccagcctttgctagagatggagaagaaaggaaagaatgatgggaggga
aaaggaagaaattggatttctatgtttgcctggacctcgcttaaggaagg
tactgggcacaagacagtgccatagctttgcctgccctacactggcaact
gggaccacccatgcatacagaatggatgtcccatcctcagcccaccttct
tgacaagctatgaccactaggaaggatgagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_125393023_125393920
seq2: B6Ng01-110G10.b_45_937 (reverse)

seq1  TTTTGAAACCCCAAAGCCCCCCCCACTGACACACCTTCTCCAAAAACAGC  50
      ||||| ||||||||||||||||||||||||||| | ||||||||||||| 
seq2  TTTTG-AACCCCAAAGCCCCCCCCACTGACACA-CATCTCCAAAAACAG-  47

seq1  CTTCTAATCCTTCCGAAACAGTTCACCAATTGGGAACCATTCAAATATAT  100
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  CTTCTAATCCTTC--GAACAGTTCACCAATTGGGAACCATTCAAATATAT  95

seq1  GAGCTTCTGGGGGCCACCCTCATAAGTTGTATATGGGAGTGTTCCTTCTT  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGCTTCTGGGGGCCACCCTCATAAGTTGTATATGGGAGTGTTCTTTCTT  145

seq1  ATTTATTTTTAAATACATGATTTGTTATTTCAAGAGCAACTCCAGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTAAATACATGATTTGTTATTTCAAGAGCAACTCCAGAAACC  195

seq1  AGGCAGGCTGGACTCAGGGCTTTTCTGCTCTAGAGGCCAAGGTCCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTGGACTCAGGGCTTTTCTGCTCTAGAGGCCAAGGTCCTTGCT  245

seq1  GACCTGGGTCTCCTGTCTCTCTTTTCTGGGTCTCTGCCTCTTCAGGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGTCTCCTGTCTCTCTTTTCTGGGTCTCTGCCTCTTCAGGCCTA  295

seq1  AAATAAGTAGTGCTAGGCCAAGCCAGGCAGTGGTGGCCCATGCCTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAGTGCTAGGCCAAGCCAGGCAGTGGTGGCCCATGCCTTTAAT  345

seq1  CCCAGCACTTAGGAAGTAGAGGCAGGCGGATTTCTGAGTTCAAGGCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTAGGAAGTAGAGGCAGGCGGATTTCTGAGTTCAAGGCTAGC  395

seq1  CTGGTCTACAGGCTAGCCAGGGCTACACAGAGAAACCACCCCCGACCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGGCTAGCCAGGGCTACACAGAGAAACCACCCCCGACCCCT  445

seq1  GTCCAAAGGAAAAAGAAACAAGTAGTGCCAGGCAAGTTTATTTCAACGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGGAAAAAGAAACAAGTAGTGCCAGGCAAGTTTATTTCAACGTT  495

seq1  CAGTCACTCGTGAAGCAGACAGGGCTCAGGTGATTCCTGGACGGGAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTCGTGAAGCAGACAGGGCTCAGGTGATTCCTGGACGGGAGGGC  545

seq1  AGGGCCAGTTAGGGCAGGTATTGGCGCCCCTGACAGGTCTCACGGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGTTAGGGCAGGTATTGGCGCCCCTGACAGGTCTCACGGAGATG  595

seq1  TGGCCACTGCACAACTTCCGTCCAGCCCAGTGGCTGTGAGATCAAGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTGCACAACTTCCGTCCAGCCCAGTGGCTGTGAGATCAAGGCTT  645

seq1  CTAAAGGAGACCGGAAGTGAGGCAGGAAGTAGGTGTTAGCCCGAGGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGACCGGAAGTGAGGCAGGAAGTAGGTGTTAGCCCGAGGGTAG  695

seq1  GGAGGCTGGAGCTTGGCTTAAAAGGCCTGCTGCCCCTTCCCTTTCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGGAGCTTGGCTTAAAAGGCCTGCTGCCCCTTCCCTTTCTTTCA  745

seq1  CCCGGACCACTAAGACTGCTTCTGGCTCACAGTTCTTACAGCCCCGTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGACCACTAAGACTGCTTCTGGCTCACAGTTCTTACAGCCCCGTGCC  795

seq1  AGGGCACCTCATGATGGACAATTCTCTTTTGGTATGACCCTTAGCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACCTCATGATGGACAATTCTCTTTTGGTATGACCCTTAGCCTGAA  845

seq1  ACGACCAGGTCATTCCATCAGTCAAAGCCACCTCCTGCCATGGAATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCAGGTCATTCCATCAGTCAAAGCCACCTCCTGCCATGGAATTC  893

seq1: chr8_125274236_125275334
seq2: B6Ng01-110G10.g_70_1152

seq1  GAATTCCAGGCTCAGCATGGGTCATGGTAAGCCTGCAGTTTGGAGTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTCAGCATGGGTCATGGTAAGCCTGCAGTTTGGAGTCAGG  50

seq1  AAGCCTGACTGGGCGTCCCTTTGAGTCCTTCCAGTGAGAACACAGGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGACTGGGCGTCCCTTTGAGTCCTTCCAGTGAGAACACAGGTTTG  100

seq1  TCACTTTGCTTCCAGCTGACAATGAACCCTCTGGCCGTGTGTGCGCCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGCTTCCAGCTGACAATGAACCCTCTGGCCGTGTGTGCGCCGTG  150

seq1  ACCATGGCAGGTCTGTGCCTTCTTGCCTTAACTTTTCCAAATGCCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCAGGTCTGTGCCTTCTTGCCTTAACTTTTCCAAATGCCCTGTG  200

seq1  GGCACTCATCTATTCATCCTTAGCCCTGTGCAGAGCCACACGGGACTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCATCTATTCATCCTTAGCCCTGTGCAGAGCCACACGGGACTAGC  250

seq1  CCATCCCAGGATTTTTAAAGGAAGCTTGCTCCTCACAAGGCTTTAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGGATTTTTAAAGGAAGCTTGCTCCTCACAAGGCTTTAGCCAG  300

seq1  AGTCTGTCTAAAGGCTGTAGGCCACTGTGGTGGTGCCTCCCAGTGCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCTAAAGGCTGTAGGCCACTGTGGTGGTGCCTCCCAGTGCTGTA  350

seq1  AGAAGAGGTCTCTGGTTGGTTAAGCAGTATGCATGCCTGGTAGCCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGTCTCTGGTTGGTTAAGCAGTATGCATGCCTGGTAGCCCTTTC  400

seq1  CAACTGGGCTGCCCATGGGATATCTACAGCTTAGCCTTTGCTGGGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGCTGCCCATGGGATATCTACAGCTTAGCCTTTGCTGGGCTCTG  450

seq1  AACCCTCCCTGGAAATTCTCTCTCTCCCTCCTTCCCAACTGCCTGTTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCCTGGAAATTCTCTCTCTCCCTCCTTCCCAACTGCCTGTTCCG  500

seq1  GTCCCTGTGCCTCTCAGTTTCTGGACCATGCTCCTTGATGTCTTTACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGCCTCTCAGTTTCTGGACCATGCTCCTTGATGTCTTTACCTC  550

seq1  CAGGCCCCTCCCCATTGCTTCTGGGGAGGCTCCTCTGCTCTGCTTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCTCCCCATTGCTTCTGGGGAGGCTCCTCTGCTCTGCTTGGCTC  600

seq1  TCCCAACCACACTCTCCACAGTCAGAAAGCCTCGCCCAACCTGACCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCACACTCTCCACAGTCAGAAAGCCTCGCCCAACCTGACCATGG  650

seq1  AGGAAGCTGGGCACCATGGAGCTAGCACCAAAGCTAATGTTTTTGCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGGGCACCATGGAGCTAGCACCAAAGCTAATGTTTTTGCTTAC  700

seq1  CCAAGTGACCAGACCTCGAGAGAGACACCTTTCTGGGATTAAAGTGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGACCAGACCTCGAGAGAGACACCTTTCTGGGATTAAAGTGACTT  750

seq1  CCTAGAGCATTACACTGGAACAGAGTGGCCCCAGTGACAATATAACCGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGCATTACACTGGAACAGAGTGGCCCCAGTGACAATATAACCGTA  800

seq1  CTGATCCTCTTGCTATCCCACCAGCCTGAGGCATTGATCCCGGAGCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTCTTGCTATCCCACCAGCCTGAGGCATTGATCCCGGAGCCCCT  850

seq1  TGCCAGCCTTTGCTAGAGATGGAGAAGAAAGGAAAGGAATGATGGGAGGG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCCAGCCTTTGCTAGAGATGGAGAAGAAAGGAAA-GAATGATGGGAGGG  899

seq1  AAAAGGAAGAAATTGGATTTCTATGTTTGCCTGGGACCTCGCTTAAGGAA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAAGGAAGAAATTGGATTTCTATGTTTGCCT-GGACCTCGCTTAAGGAA  948

seq1  GGGTACCTGGGCACAAGGACAGTGCCCATAGCTTTGCCTGCCCTACACTG  1000
       |||| |||||||||| ||||||| |||||||||||||||||||||||||
seq2  -GGTA-CTGGGCACAA-GACAGTG-CCATAGCTTTGCCTGCCCTACACTG  994

seq1  GCCACCTGGGACCACCCATGCCATACCAGATGGAATGTCCCCATCCCTCA  1050
      | || ||||||||||||||| |||| ||||  | |||| ||||| |||||
seq2  G-CAACTGGGACCACCCATG-CATA-CAGAATGGATGT-CCCAT-CCTCA  1039

seq1  GCCCCACCCTCTTTGACTAGCCTATGACCACTAGGAAGGGAGTGAGCTT  1099
      | |||||| || ||||| || ||||||||||||||||||   |||||||
seq2  G-CCCACCTTC-TTGACAAG-CTATGACCACTAGGAAGG--ATGAGCTT  1083