BAC Information

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BAC

Clone NameB6Ng01-110J23
Chromosome8 (Build37)
Map Location 106,473,811 - 106,628,037
singlet/doubletdoublet
Overlap geneLOC100041397, LOC667656, Cdh5
Upstream geneLOC100041368, 1600027J07Rik
Downstream geneBean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J23.bB6Ng01-110J23.g
ACCDH917193DH917194
length1,074203
definitionDH917193|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J23, 5' end.DH917194|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,626,958 - 106,628,037)(106,473,811 - 106,474,013)
sequence
gaattccaggttcccacccttccttcaagaagttctctgtaatttctcct
ctcaatgccaacttagagcagggttatgatgaactttttatatttctcca
acaacagtagaaccattctcttagggcagttcccagtttatccttatact
ggctgtggtggtctaaattgtatatgattgcctcttctctaaatttcaat
atagagtatggctatggggtcagccctatccctttcccactttatactat
gtggccacatgtctggctagcctctctggattccagaggtcccatcagtc
acttgggaattattcatgtcaactgagggggtgctaaggaggtgatggaa
gcaaccagaaatggtccactcagccaggggttgagatttttgctagaacg
gtggctggtgtctccgaggttcccgtgcaactgtgactcatctaactttg
ggagaaaaaaagtgtggcccttcaggcttcctgctctatgtccggttctt
gtttagctgcacaatggtcgggctgagactacggggtaggcaggttaacc
ccttcaaggtactgggaacttcttctagctcctaattgtgaaaagttaga
atttgaaggactgccctgaggatcagctgcccctggccccttggggtcac
ctggtactttccagtccgcaaatggctgggctcaggccagatgcaggaga
gttttgtgtctttcttgcccactaattgttctgggctgtcaaatcctctc
tgcgactcagcattcaacccagttctaaagaacccagaacccaccagcct
cccagacccttcaagcttccaaccttgaagtcatccactgtcattagagt
cttgcttgcctgccacattcctccaggggtaactaatgaacgcagatgcc
cggaaggtgcttgcagcagggtagctaagtatatgggcctctcttactct
ggcccttctttcacatgggtgagacccctacagaaggtgtgagacttgtg
cttgtggttcaaatctttgtggtattcacagcacctattggctttggggt
agtggtaaatccacctcagattcc
tctttggactaaaactaggggtggagccgaggggagagttcggtgatcga
ttgcttaagtgggcttgggcttgcccttcatcactggcaaaaacaaaaca
aaaaacaaacaaacaaagcacctcccaaaagcaaatttccctgatacttg
tttgttgttgttgttgttttggttcagtttggggttttgggtggttattt
ttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106626958_106628037
seq2: B6Ng01-110J23.b_48_1121 (reverse)

seq1  GGAATCCTGA-GTGGATTTACCCACTACCCCATAGCC-ATAGGTGGCTGT  48
      ||||| |||| ||||||||| ||||||||||| |||| |||||| |||||
seq2  GGAAT-CTGAGGTGGATTTA-CCACTACCCCAAAGCCAATAGGT-GCTGT  47

seq1  GAATACCACAAAGATTTGAAACCACAAAGCACAAGTCTCACACCTCCTGT  98
      |||||||||||||||||| |||||| ||||||||||||||||||| ||||
seq2  GAATACCACAAAGATTTG-AACCAC-AAGCACAAGTCTCACACCTTCTGT  95

seq1  TAGGGGGTCTCACCCATGTGAAAGGAAGGGCCAGAGTAAGAGAGG-CCAT  147
         |||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  --AGGGGTCTCACCCATGTGAAA-GAAGGGCCAGAGTAAGAGAGGCCCAT  142

seq1  ATACTTAGCTACCCCTGCTGCAAGCACC-TCCGGGCATCTGCGTTCATTA  196
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  ATACTTAGCTA-CCCTGCTGCAAGCACCTTCCGGGCATCTGCGTTCATTA  191

seq1  GTTACCCCTGGAGGAATGTGGCAGGCAAGCAAGACTCTAATGACAGTGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCCTGGAGGAATGTGGCAGGCAAGCAAGACTCTAATGACAGTGGA  241

seq1  TGACTTCAAGGTTGGAAGCTTGAAGGGTCTGGGAGGCTGGTGGGTTCTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAAGGTTGGAAGCTTGAAGGGTCTGGGAGGCTGGTGGGTTCTGG  291

seq1  GTTCTTTAGAACTGGGTTGAATGCTGAGTCGCAGAGAGGATTTTGACAGC  346
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTCTTTAGAACTGGGTTGAATGCTGAGTCGCAGAGAGGA-TTTGACAGC  340

seq1  CCAGAACAATTAGTGGGCAAGAAAGACACAAAACTCTCCTGCATCTGGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACAATTAGTGGGCAAGAAAGACACAAAACTCTCCTGCATCTGGCC  390

seq1  TGAGCCCAGCCATTTGCGGACTGGAAAGTACCAGGTGACCCCAAGGGGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGCCATTTGCGGACTGGAAAGTACCAGGTGACCCCAAGGGGCC  440

seq1  AGGGGCAGCTGATCCTCAGGGCAGTCCTTCAAATTCTAACTTTTCACAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGCTGATCCTCAGGGCAGTCCTTCAAATTCTAACTTTTCACAAT  490

seq1  TAGGAGCTAGAAGAAGTTCCCAGTACCTTGAAGGGGTTAACCTGCCTACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTAGAAGAAGTTCCCAGTACCTTGAAGGGGTTAACCTGCCTACC  540

seq1  CCGTAGTCTCAGCCCGACCATTGTGCAGCTAAACAAGAACCGGACATAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGTCTCAGCCCGACCATTGTGCAGCTAAACAAGAACCGGACATAGA  590

seq1  GCAGGAAGCCTGAAGGGCCACACTTTTTTTCTCCCAAAGTTAGATGAGTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGCCTGAAGGGCCACACTTTTTTTCTCCCAAAGTTAGATGAGTC  640

seq1  ACAGTTGCACGGGAACCTCGGAGACACCAGCCACCGTTCTAGCAAAAATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCACGGGAACCTCGGAGACACCAGCCACCGTTCTAGCAAAAATC  690

seq1  TCAACCCCTGGCTGAGTGGACCATTTCTGGTTGCTTCCATCACCTCCTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCTGGCTGAGTGGACCATTTCTGGTTGCTTCCATCACCTCCTTA  740

seq1  GCACCCCCTCAGTTGACATGAATAATTCCCAAGTGACTGATGGGACCTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCCTCAGTTGACATGAATAATTCCCAAGTGACTGATGGGACCTCT  790

seq1  GGAATCCAGAGAGGCTAGCCAGACATGTGGCCACATAGTATAAAGTGGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCAGAGAGGCTAGCCAGACATGTGGCCACATAGTATAAAGTGGGA  840

seq1  AAGGGATAGGGCTGACCCCATAGCCATACTCTATATTGAAATTTAGAGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATAGGGCTGACCCCATAGCCATACTCTATATTGAAATTTAGAGAA  890

seq1  GAGGCAATCATATACAATTTAGACCACCACAGCCAGTATAAGGATAAACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAATCATATACAATTTAGACCACCACAGCCAGTATAAGGATAAACT  940

seq1  GGGAACTGCCCTAAGAGAATGGTTCTACTGTTGTTGGAGAAATATAAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGCCCTAAGAGAATGGTTCTACTGTTGTTGGAGAAATATAAAAA  990

seq1  GTTCATCATAACCCTGCTCTAAGTTGGCATTGAGAGGAGAAATTACAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCATAACCCTGCTCTAAGTTGGCATTGAGAGGAGAAATTACAGAG  1040

seq1  AACTTCTTGAAGGAAGGGTGGGAACCTGGAATTC  1080
      ||||||||||||||||||||||||||||||||||
seq2  AACTTCTTGAAGGAAGGGTGGGAACCTGGAATTC  1074

seq1: chr8_106473811_106474013
seq2: B6Ng01-110J23.g_72_274

seq1  TCTTTGGACTAAAACTAGGGGTGGAGCCGAGGGGAGAGTTCGGTGATCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGACTAAAACTAGGGGTGGAGCCGAGGGGAGAGTTCGGTGATCGA  50

seq1  TTGCTTAAGTGGGCTTGGGCTTGCCCTTCATCACTGGCAAAAACAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAAGTGGGCTTGGGCTTGCCCTTCATCACTGGCAAAAACAAAACA  100

seq1  AAAAACAAACAAACAAAGCACCTCCCAAAAGCAAATTTCCCTGATACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAACAAAGCACCTCCCAAAAGCAAATTTCCCTGATACTTG  150

seq1  TTTGTTGTTGTTGTTGTTTTGGTTCAGTTTGGGGTTTTGGGTGGTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTGTTGTTGTTTTGGTTCAGTTTGGGGTTTTGGGTGGTTATTT  200

seq1  TTC  203
      |||
seq2  TTC  203