BAC Information

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BAC

Clone NameB6Ng01-110P02
Chromosome8 (Build37)11 (Build37)
Map Location 98,317,672 - 98,318,15449,826,502 - 49,826,872
singlet/doubletsingletsinglet
Overlap geneCnot1
Upstream gene1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6
Downstream geneLOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P02.bB6Ng01-110P02.g
ACCDH917421DH917422
length672365
definitionDH917421|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P02, 5' end.DH917422|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,317,672 - 98,318,154)(49,826,502 - 49,826,872)
sequence
gaattccaggacagccagggctatacagagaaaccctgtcttgaaaaacc
aaaaaaaaccaaaacaaaacaaaaaaaaccaggttgggcagtggtggcgc
atgcctttaatcccagcacttgggaggcaaaggcaggcaaatttctgagt
ttgaggccagcctggtctacagagtgagttccaggacagccggggctata
cagagaaaccctgtcttaaaaaaccaaaaaaagaggctggtgagatggct
cagtgggtaagagcacccgactgctcttccaaaggtcaggagttcaaatc
ccagcaaccacatggtggctcacaaccatccgatcacgagatctgactcc
ctcttctggagtgtctgaagacagctacagtgtacttacatataataaat
aaataaataaatcaaaaaaaaaaaaaaagactcatgctgcctcccactga
tatgcattgtgcgacaaacatgacaactaatgaatcctgctgcaaagaaa
ggtcaaacttgagctggagagatggctcagtggtaagagcatagactgct
cttctgaaggtccagagttctaattccagcaaccacaaggtgattcataa
tcacccggaatgagatctgacaccctcttctggggagtctgaagacagct
acagtgttacttatgtataata
ccgcaactaaaatgggcccaaggatggcctgccactcagtgtgcagggtg
caatcctgctctgaggttctcccagataccctcctcactatatagccaga
gacctcaggtccttcttagctaaatcgaaactgactcctttctctaggct
aggcttaatctgggtgtctcaaacagcatggggaacctctgaatgacaga
aaccagattccagcctttgaggatctctctccttttaatttgtttgcttt
taatccacttatatcagtcaggactgcattttgatgcaattagcgggaaa
tctttcgcagagtgattgagttagagaagtacaaagtgtggggggagggt
tgcggcggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_98317672_98318154
seq2: B6Ng01-110P02.b_149_474

seq1  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  50
      ||||||||||||||||||||||||||| ||||||||  ||||||||||| 
seq2  GCCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGGCAAATTTCTGAGTTT  50

seq1  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACA  100
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCGGGGCTATACA  100

seq1  GAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAGGTAAGTAAATGTAA  150
      ||||||||||||||  |||||||||||||| |                  
seq2  GAGAAACCCTGTCTTAAAAAACCAAAAAAAGA------------------  132

seq1  GGCATGACTATTCAGTGGGCTGGAGATAATAGTAATAGAGGGCTGGCTGG  200
                                                        
seq2  --------------------------------------------------  132

seq1  TCTGCCCACAAAAGCCCTGGGTTTGGTCCCCAGTAACATCTCCTCCCCCT  250
                                                        
seq2  --------------------------------------------------  132

seq1  TAAAAAAACAAAACAAAAAAGTAATCACTGGGCTGGCGAGATGGCTCAGT  300
                                    |||||| |||||||||||||
seq2  ------------------------------GGCTGGTGAGATGGCTCAGT  152

seq1  GGGTAAGAGCACCCGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAG  350
      |||||||||||||||||||||||||  ||||||  |||||||||||||||
seq2  GGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCAGGAGTTCAAATCCCAG  202

seq1  CAACCACATGGTGGCTCACAACCATCCG-TAATGTGATCTGACTCCCTCT  399
      |||||||||||||||||||||||||||| | | | |||||||||||||||
seq2  CAACCACATGGTGGCTCACAACCATCCGATCACGAGATCTGACTCCCTCT  252

seq1  TCTGGAGTGTCTGAAGACAGCTACAGTGTACTAACATAAAATAAATAAAT  449
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAAT  302

seq1  GAATAAATCTGTTTGTTTTAAAAAAAAAAAAAAA  483
       ||||||||          |||||||||||||||
seq2  AAATAAATC----------AAAAAAAAAAAAAAA  326

seq1: chr11_49826502_49826872
seq2: B6Ng01-110P02.g_72_442

seq1  GAATTCCAGCAACTAAAATGGGCCCAAGGATGGCCTGCCACTCAGTGTGC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGCAACTAAAATGGGCCCAAGGATGGCCTGCCACTCAGTGTGC  50

seq1  AGGGTGCAATCCTGCTCTGAGGTTCTCCCAGATACCCTCCTCACTATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCAATCCTGCTCTGAGGTTCTCCCAGATACCCTCCTCACTATATA  100

seq1  GCCAGAGACCTCAGGTCCTTCTTAGCTAAATCGAAACTGACTCCTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACCTCAGGTCCTTCTTAGCTAAATCGAAACTGACTCCTTTCTC  150

seq1  TAGGCTAGGCTTAATCTGGGTGTCTCAAACAGCATGGGGAACCTCTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAGGCTTAATCTGGGTGTCTCAAACAGCATGGGGAACCTCTGAAT  200

seq1  GACAGAAACCAGATTCCAGCCTTTGAGGATCTCTCTCCTTTTAATTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAACCAGATTCCAGCCTTTGAGGATCTCTCTCCTTTTAATTTGTT  250

seq1  TGCTTTTAATCCACTTATATCAGTCAGGACTGCATTTTGATGCAATTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAATCCACTTATATCAGTCAGGACTGCATTTTGATGCAATTAGC  300

seq1  GGGAAATCTTTCGCAGAGTGATTGAGTTAGAGAAGTACAAAGTGTGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCTTTCGCAGAGTGATTGAGTTAGAGAAGTACAAAGTGTGGGGG  350

seq1  GAGGGTTGCGGCGGGGGGGGG  371
      |||||||||||||||||||||
seq2  GAGGGTTGCGGCGGGGGGGGG  371