BAC Information

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BAC

Clone NameB6Ng01-111D12
Chromosome8 (Build37)
Map Location 88,872,616 - 89,010,249
singlet/doubletdoublet
Overlap genenone
Upstream geneD830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D12.bB6Ng01-111D12.g
ACCDH917623DH917624
length1,1041,119
definitionDH917623|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D12, 5' end.DH917624|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,872,616 - 88,873,740)(89,008,864 - 89,010,249)
sequence
gaattccagacagcacacagatgctgaaactatctgcagctggcaaaaca
acacctctactagaccatggggcaaatcatactcaactgtccaaagaagc
cccacccccacacatggaattaaagggaaatcgtactcttacaatacttc
tgtgctttttaaagaaaccaaaattccaaaatttcactacacaggcacat
atgtatacacatgcatatgcacatatgcacttacatgcacagacacacac
cataaacattcacaacacacacatacacacagacacacacacacacatac
tctgccataacttttaaaaataaaaaataatcagaaataataggtacatc
tgttaacaagggaggacaagatattgttcttccaggctgaaaaatactgc
atagcactgaaatacatgcgtgttcaattacatatgtgtgaccacatgga
aaaattactaagatacatagttgaatgtaaaaattgaacatagatacaaa
aacatagagaagatcccatttttgtacaataaaaggctttgtatatctga
ctataaatgcacaaaagtagtctagcaagtttggtatgaactataaactt
cagagaccaattcttgggagccaaacaacactggaagatagaggtagaaa
tgtatggacaaaagttacataatagttgctgttatttcttcatgctacta
acctttaaccatgagaatccagatgaaaattaccttttgtgatttgtttc
tttctttgttttgttttggctttttgagacctggtttctctatacagccc
tggttgtgctggaactcactttgtagaccagctggcctcaaactcagaat
ccaccttctctgcctcccaagtgctgggattaaaggtgtgtgccaccact
gcctgacttgtttgtttgtttgttttttaaaggcaaaccctgggcaataa
tttgctcatatacccttttaccctgagcttagatactgacagcagctgtg
ggatgcagctctagcacaggatttcttgtctcttgtagatctgtactctg
ctattggtttcttgtcttctcttcagtcgacttgagaataaagtgtaagt
tagt
gaattcactgagttagcaggaaggtgactctcatacagttaaaaagtctt
cagcttggttctctttctaaatgtagatggcaggaagtggggacaatcat
ggcatttcagtctggctttcctgctgtttccaatgatgactgcatcttgt
cttgtggatccctgatggaacagctaccatgatttcatttctgttggagg
gcacagctactagattttggataaaagacggaagacgtatggagactcac
aaactaaatgtcctctgtacgcacattcacagaactgagcttcccacagc
gtacatgtttgctggatgaaggaaaccctggtcttttcattgaatgggct
cgagaagatggggaggggaagtagaggtcatttaatgagctaatttatga
atatcgaggtgcatatttaaaagagagtttaatcctatatccttttagta
gaataatagcaataagtttaccccttgggatcatgggtttcctagctctg
ggttcttgtccatatttacaggtatatcctcttgtggagtaggattcaaa
tccaactagaaatatttggttaccctgtgacatttacaccagtattggac
tcatggcatatcttgccagactggccattattgtagttcgaaagttcaga
atgacttgtctccaccatgagcctgcgcagtaccttccagtcctatgaaa
gccagacaacaggaagggagtttcctggtcagcatcagtgtgatttttgc
aggctccgtgacccaagtgtgtgatgccctcagcagcggggtcgtctcat
caagtccttggcagagaacaggaaccatgaagtatcctgtattgaatgat
gttcgagaaggaacattttcttctgtgtagagcaattataactaaactct
tataaatgtcacctactatttgtaagtcattaaaatataagtaagatata
aatagatcaggatgtagactcctgctcggctgacaatgtgtctagaagct
atgggttattacaaaacaaatttggtgagagattctttatgacttgtggt
catagaggcccaaagtctccaaacaatacagcctggcatgcttctggtgt
tcaacagcctgagtaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88872616_88873740
seq2: B6Ng01-111D12.b_47_1150

seq1  GAATTCCAGACAGCACACAGATGCTGAAACTATCTGCAGCTGGCAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAGCACACAGATGCTGAAACTATCTGCAGCTGGCAAAACA  50

seq1  ACACCTCTACTAGACCATGGGGCAAATCATACTCAACTGTCCAAAGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTACTAGACCATGGGGCAAATCATACTCAACTGTCCAAAGAAGC  100

seq1  CCCACCCCCACACATGGAATTAAAGGGAAATCGTACTCTTACAATACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCACACATGGAATTAAAGGGAAATCGTACTCTTACAATACTTC  150

seq1  TGTGCTTTTTAAAGAAACCAAAATTCCAAAATTTCACTACACAGGCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTTAAAGAAACCAAAATTCCAAAATTTCACTACACAGGCACAT  200

seq1  ATGTATACACATGCATATGCACATATGCACTTACATGCACAGACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACACATGCATATGCACATATGCACTTACATGCACAGACACACAC  250

seq1  CATAAACATTCACAACACACACATACACACAGACACACACACACACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATTCACAACACACACATACACACAGACACACACACACACATAC  300

seq1  TCTGCCATAACTTTTAAAAATAAAAAATAATCAGAAATAATAGGTACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATAACTTTTAAAAATAAAAAATAATCAGAAATAATAGGTACATC  350

seq1  TGTTAACAAGGGAGGACAAGATATTGTTCTTCCAGGCTGAAAAATACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACAAGGGAGGACAAGATATTGTTCTTCCAGGCTGAAAAATACTGC  400

seq1  ATAGCACTGAAATACATGCGTGTTCAATTACATATGTGTGACCACATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTGAAATACATGCGTGTTCAATTACATATGTGTGACCACATGGA  450

seq1  AAAATTACTAAGATACATAGTTGAATGTAAAAATTGAACATAGATACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACTAAGATACATAGTTGAATGTAAAAATTGAACATAGATACAAA  500

seq1  AACATAGAGAAGATCCCATTTTTGTACAATAAAAGGCTTTGTATATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAGAAGATCCCATTTTTGTACAATAAAAGGCTTTGTATATCTGA  550

seq1  CTATAAATGCACAAAAGTAGTCTAGCAAGTTTGGTATGAACTATAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGCACAAAAGTAGTCTAGCAAGTTTGGTATGAACTATAAACTT  600

seq1  CAGAGACCAATTCTTGGGAGCCAAACAACACTGGAAGATAGAGGTAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCAATTCTTGGGAGCCAAACAACACTGGAAGATAGAGGTAGAAA  650

seq1  TGTATGGACAAAAGTTACATAATAGTTGCTGTTATTTCTTCATGCTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGACAAAAGTTACATAATAGTTGCTGTTATTTCTTCATGCTACTA  700

seq1  ACCTTTAACCATGAGAATCCAGATGAAAATTACCTTTTGTGATTTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAACCATGAGAATCCAGATGAAAATTACCTTTTGTGATTTGTTTC  750

seq1  TTTCTTTGTTTTGTTTTGGCTTTTTGAGACCTGGTTTCTCTATACAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTTTGTTTTGGCTTTTTGAGACCTGGTTTCTCTATACAGCCC  800

seq1  TGGTTGTGCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAA  850
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TGGTTGTGCTGGAACTCACTTTGTAGACCA-GCTGGCCTCAAACTCAG-A  848

seq1  ATCCACCTTCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTTCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCA  898

seq1  CTGCCTGACTTGTTTTGTTTTGTTTTGTTTTTTAAAGGCAAACCCTGGGC  950
      |||||||||||| |||||||   |||||||||||||||||||||||||||
seq2  CTGCCTGACTTG-TTTGTTT--GTTTGTTTTTTAAAGGCAAACCCTGGGC  945

seq1  AATAATTTGCTCATATACCCTTTTAACCCTGAGCTTAGATACTGACAGCA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATAATTTGCTCATATACCCTTTT-ACCCTGAGCTTAGATACTGACAGCA  994

seq1  GCTGTGGGATGCAGGCTCTAGCACAGGGATTTCTTGTCTCTTGTTAGGAA  1050
      ||||||||||||| ||||||||||| ||||||||||||||||||    | 
seq2  GCTGTGGGATGCA-GCTCTAGCACA-GGATTTCTTGTCTCTTGT----AG  1038

seq1  TTCTGTACTCTGCCTAATGGGTATCTTGTCCTCCTCTTCCAGTCCGAACT  1100
       ||||||||||||   || ||| |||||| || ||||| |||| |||  |
seq2  ATCTGTACTCTGC--TATTGGTTTCTTGT-CTTCTCTT-CAGT-CGACTT  1083

seq1  GTGAAGAATAAAAGTGTAAGTTAGT  1125
      |   ||||| |||||||||||||||
seq2  G---AGAAT-AAAGTGTAAGTTAGT  1104

seq1: chr8_89008864_89010249
seq2: B6Ng01-111D12.g_69_1187 (reverse)

seq1  TTGGTACTCCTATCACAGTCATGCTGCCGTTGAAGGAGTGGACATATCTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCCTGGTGGGTGGGTATTGTGGTTACTAAGATTCGCAGCTGAGTAAGACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AACGACACCCTTTCTTTCCCAGTGGCCTGCATATAACTTGTGACATTATG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGCTAGCCAGGTTGTAAGAAACTTTCAGTTTCAGCTTGACTTCTTTTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGGGGGGGGAACTGTGTGCTACATCAACAATAGGACCATGGTGTCATC  250
                                              ||||     |
seq2  ---------------------------------------TTGGT----AC  7

seq1  TAGACCTGTTGAACACCAAGAAGCATGGCAAGAGGCTGTATTGTTTGGAA  300
      |    |||||||||||| ||||||||| |   |||||||||||||||| |
seq2  TCAGGCTGTTGAACACC-AGAAGCATGCC---AGGCTGTATTGTTTGG-A  52

seq1  GACCTTTGGGGCCTCTCTGACCAACAAGTCATAAAAGAATCTCTCACCAA  350
      |||  || |||||||| ||||| ||||||||| |||||||||||||||||
seq2  GAC--TTTGGGCCTCTATGACC-ACAAGTCAT-AAAGAATCTCTCACCAA  98

seq1  ATTTGTTTTTGTTAATAACCCATAGCTTCTAGGAACAACATTGTCCAGCC  400
      |||||||||   ||||||||||||||||||||  || ||||||| |||||
seq2  ATTTGTTTT--GTAATAACCCATAGCTTCTAG--AC-ACATTGT-CAGCC  142

seq1  GAGCAGGAGTTCTACCTTCTGATTCTAATTTATTATCTTTAACTTATATT  450
      ||||||||| ||||| | |||| ||| ||||| ||||||  |||||||||
seq2  GAGCAGGAG-TCTACATCCTGA-TCT-ATTTA-TATCTT--ACTTATATT  186

seq1  TTAATTGACTTACAAAATAGTAGGTTGACATTTATAAGAGTTTAGTTATA  500
      |||| |||||||| |||||||||| |||||||||||||||||||||||||
seq2  TTAA-TGACTTAC-AAATAGTAGG-TGACATTTATAAGAGTTTAGTTATA  233

seq1  ATTGCTCTACACAGAAGAAAATGTTCCTTCTCGAACATCATTCAATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTACACAGAAGAAAATGTTCCTTCTCGAACATCATTCAATACAG  283

seq1  GATACTTCATGGTTCCTGTTCTCTGCCAAGGACTTGATGAGACGACCCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCATGGTTCCTGTTCTCTGCCAAGGACTTGATGAGACGACCCCG  333

seq1  CTGCTGAGGGCATCACACACTTGGGTCACGGAGCCTGCAAAAATCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGGGCATCACACACTTGGGTCACGGAGCCTGCAAAAATCACACT  383

seq1  GATGCTGACCAGGAAACTCCCTTCCTGTTGTCTGGCTTTCATAGGACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGACCAGGAAACTCCCTTCCTGTTGTCTGGCTTTCATAGGACTGG  433

seq1  AAGGTACTGCGCAGGCTCATGGTGGAGACAAGTCATTCTGAACTTTCGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACTGCGCAGGCTCATGGTGGAGACAAGTCATTCTGAACTTTCGAA  483

seq1  CTACAATAATGGCCAGTCTGGCAAGATATGCCATGAGTCCAATACTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATAATGGCCAGTCTGGCAAGATATGCCATGAGTCCAATACTGGTG  533

seq1  TAAATGTCACAGGGTAACCAAATATTTCTAGTTGGATTTGAATCCTACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCACAGGGTAACCAAATATTTCTAGTTGGATTTGAATCCTACTC  583

seq1  CACAAGAGGATATACCTGTAAATATGGACAAGAACCCAGAGCTAGGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGGATATACCTGTAAATATGGACAAGAACCCAGAGCTAGGAAAC  633

seq1  CCATGATCCCAAGGGGTAAACTTATTGCTATTATTCTACTAAAAGGATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCCCAAGGGGTAAACTTATTGCTATTATTCTACTAAAAGGATAT  683

seq1  AGGATTAAACTCTCTTTTAAATATGCACCTCGATATTCATAAATTAGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAAACTCTCTTTTAAATATGCACCTCGATATTCATAAATTAGCTC  733

seq1  ATTAAATGACCTCTACTTCCCCTCCCCATCTTCTCGAGCCCATTCAATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGACCTCTACTTCCCCTCCCCATCTTCTCGAGCCCATTCAATGA  783

seq1  AAAGACCAGGGTTTCCTTCATCCAGCAAACATGTACGCTGTGGGAAGCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCAGGGTTTCCTTCATCCAGCAAACATGTACGCTGTGGGAAGCTC  833

seq1  AGTTCTGTGAATGTGCGTACAGAGGACATTTAGTTTGTGAGTCTCCATAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTGAATGTGCGTACAGAGGACATTTAGTTTGTGAGTCTCCATAC  883

seq1  GTCTTCCGTCTTTTATCCAAAATCTAGTAGCTGTGCCCTCCAACAGAAAT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCGTCTTTTATCCAAAATCTAGTAGCTGTGCCCTCCAACAGAAAT  933

seq1  GAAATCATGGTAGCTGTTCCATCAGGGATCCACAAGACAAGATGCAGTCA  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGGTAGCTGTTCCATCAGGGATCCACAAGACAAGATGCAGTCA  983

seq1  TCATTGGAAACAGCAGGAAAGCCAGACTGAAATGCCATGATTGTCCCCAC  1300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGAAACAGCAGGAAAGCCAGACTGAAATGCCATGATTGTCCCCAC  1033

seq1  TTCCTGCCATCTACATTTAGAAAGAGAACCAAGCTGAAGACTTTTTAACT  1350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCATCTACATTTAGAAAGAGAACCAAGCTGAAGACTTTTTAACT  1083

seq1  GTATGAGAGTCACCTTCCTGCTAACTCAGTGAATTC  1386
      ||||||||||||||||||||||||||||||||||||
seq2  GTATGAGAGTCACCTTCCTGCTAACTCAGTGAATTC  1119