BAC Information

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BAC

Clone NameB6Ng01-111F05
Chromosome4 (Build37)8 (Build37)
Map Location 41,981,441 - 41,981,51063,723,521 - 63,724,639
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539
Downstream geneLOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111F05.bB6Ng01-111F05.g
ACCDH917698DH917699
length1751,113
definitionDH917698|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F05, 5' end.DH917699|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,981,441 - 41,981,510)(63,723,521 - 63,724,639)
sequence
agaaatccacctgcctctgcctcccgagtgctgggattaaaggtgtgtgc
caccaccgcctggctccttttcattcttttttctttctttccttcctcct
ttcttttcttccctccctccctctctcccttcttttcttccttccttctt
cccttccttccttccttccttcctt
gaattcaggggtttgtacatgtgaagcgtgttctcttcccatccttttct
ttgtataaaaagttttaggtattcagttcaggaaatacttctcgatggag
ttggtagagctccaaatgcgttcggtcaagttgatgtcttcgcaagtgtg
gtgtgccccaccacatgtgggtttttagctagctagcttaatcacattgg
ctcttccattattcaagtcaaccatgaacgtattacccaatggccgcgta
agccctcgctcgtgaagcctgcctgtaattgaatcctgagttgcagttct
cacgaggatggcgcttgaaactttgtgttacacccaccatggtggtctgg
aagtcatgttttcctcgtttattaggggaaaaaaatgttctgctgagttg
aattggaagccctctaaaaggtaaaacgtgtgataggctgtctcaccttc
cccagacaaaacagacccaaacccactgggcatcttggtctttcccaaat
gtcttccgatgtctttgtgcatctgctttgggctgatgatgattcaggga
gcaaatgcctgtgttcccatgcaggctgcctatacactaagtcattccta
agggagtaaatcccttggatggttggaagcgcaggtaacgacatggttag
caacagtacttcctcactttaaatcccatgagaggcaacacgagcattca
aaattaaattaaaattcttgagaatgaagcagagagaggagaaagggaca
gttacaagaataaattagtccccagggaccctttccaattcccacattat
aagccaaccagctaggatatgaagcatacatgacaagtgcccaggggctc
taggggtgtagatacctgcagggtagattttctgtgtgttaatgtatcac
agggcttaactatgtgcatggaaataccttgagttattgtacttctcttg
ggagagtgagctatgtgataccagaaaacgggaccactagatctactgac
attcattacagaataaagacaatggttgactggcagaggagcgctgtaga
aggcctggtaacttaagaaatggcacaagttggttctctaggtatgctgg
aatgaaagagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_41981441_41981510
seq2: B6Ng01-111F05.b_160_225 (reverse)

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGACGGAA  50
      |||||||||||||||||||||||| | |||||||||||||||     |||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGGAAGAAGGAAGGAAGAAA----AGAA  46

seq1  GGGAGGGAGGGAGGGAGGGA  70
      ||||| ||||||||||||||
seq2  GGGAGAGAGGGAGGGAGGGA  66

seq1: chr8_63723521_63724639
seq2: B6Ng01-111F05.g_68_1180

seq1  GAATTCAGGGGTTTGTACATGTGAAGCGTGTTCTCTTCCCATCCTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGTTTGTACATGTGAAGCGTGTTCTCTTCCCATCCTTTTCT  50

seq1  TTGTATAAAAAGTTTTAGGTATTCAGTTCAGGAAATACTTCTCGATGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAAAAGTTTTAGGTATTCAGTTCAGGAAATACTTCTCGATGGAG  100

seq1  TTGGTAGAGCTCCAAATGCGTTCGGTCAAGTTGATGTCTTCGCAAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGAGCTCCAAATGCGTTCGGTCAAGTTGATGTCTTCGCAAGTGTG  150

seq1  GTGTGCCCCACCACATGTGGGTTTTTAGCTAGCTAGCTTAATCACATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCCACCACATGTGGGTTTTTAGCTAGCTAGCTTAATCACATTGG  200

seq1  CTCTTCCATTATTCAAGTCAACCATGAACGTATTACCCAATGGCCGCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCATTATTCAAGTCAACCATGAACGTATTACCCAATGGCCGCGTA  250

seq1  AGCCCTCGCTCGTGAAGCCTGCCTGTAATTGAATCCTGAGTTGCAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCGCTCGTGAAGCCTGCCTGTAATTGAATCCTGAGTTGCAGTTCT  300

seq1  CACGAGGATGGCGCTTGAAACTTTGTGTTACACCCACCATGGTGGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGATGGCGCTTGAAACTTTGTGTTACACCCACCATGGTGGTCTGG  350

seq1  AAGTCATGTTTTCCTCGTTTATTAGGGGAAAAAAATGTTCTGCTGAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGTTTTCCTCGTTTATTAGGGGAAAAAAATGTTCTGCTGAGTTG  400

seq1  AATTGGAAGCCCTCTAAAAGGTAAAACGTGTGATAGGCTGTCTCACCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAGCCCTCTAAAAGGTAAAACGTGTGATAGGCTGTCTCACCTTC  450

seq1  CCCAGACAAAACAGACCCAAACCCACTGGGCATCTTGGTCTTTCCCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAAAACAGACCCAAACCCACTGGGCATCTTGGTCTTTCCCAAAT  500

seq1  GTCTTCCGATGTCTTTGTGCATCTGCTTTGGGCTGATGATGATTCAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCGATGTCTTTGTGCATCTGCTTTGGGCTGATGATGATTCAGGGA  550

seq1  GCAAATGCCTGTGTTCCCATGCAGGCTGCCTATACACTAAGTCATTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCCTGTGTTCCCATGCAGGCTGCCTATACACTAAGTCATTCCTA  600

seq1  AGGGAGTAAATCCCTTGGATGGTTGGAAGCGCAGGTAACGACATGGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTAAATCCCTTGGATGGTTGGAAGCGCAGGTAACGACATGGTTAG  650

seq1  CAACAGTACTTCCTCACTTTAAATCCCATGAGAGGCAACACGAGCATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTACTTCCTCACTTTAAATCCCATGAGAGGCAACACGAGCATTCA  700

seq1  AAATTAAATTAAAATTCTTGAGAATGAAGCAGAGAGAGGAGAAAGGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATTAAAATTCTTGAGAATGAAGCAGAGAGAGGAGAAAGGGACA  750

seq1  GTTACAAGAATAAATTAGTCCCCAGGGACCCTTTCCAATTCCCACATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAGAATAAATTAGTCCCCAGGGACCCTTTCCAATTCCCACATTAT  800

seq1  AAGCCAACCAGCTAGGATATGAAGCATACATGACAAGGGCCCAGGGGCTC  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGCCAACCAGCTAGGATATGAAGCATACATGACAAGTGCCCAGGGGCTC  850

seq1  TA-GGGTGTAGATACCTGCAGGGTAGATTTTCTGTGATGTTAATGTATCA  899
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGGGGTGTAGATACCTGCAGGGTAGATTTTCTGTG-TGTTAATGTATCA  899

seq1  CAGGGCTTAACTATGTGCATGGAAATACCTTGAGTTATTGTTACTTCTCT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGGCTTAACTATGTGCATGGAAATACCTTGAGTTATTG-TACTTCTCT  948

seq1  TGGGAGAGTGAGCTATGTGATACCCAGAAAACGGGA-CACTAGATCTACC  998
      |||||||||||||||||||||| ||||||||||||| ||||||||||| |
seq2  TGGGAGAGTGAGCTATGTGATA-CCAGAAAACGGGACCACTAGATCTA-C  996

seq1  TGACATTTCATTACAGATTAAAGACAATGGTGGACCTGGCAGAGGAGCGC  1048
      ||||| ||||||||||| ||||||||||||| || |||||||||||||||
seq2  TGACA-TTCATTACAGAATAAAGACAATGGTTGA-CTGGCAGAGGAGCGC  1044

seq1  TGTAGGAGGGCCTGGTAACTTTAGAAAT-GCACCAGGCTGGGTTCTCTAG  1097
      |||| || ||||||||||||| |||||| |||| ||  | ||||||||||
seq2  TGTA-GAAGGCCTGGTAACTTAAGAAATGGCACAAG--TTGGTTCTCTAG  1091

seq1  GTATGCTGTGAATG-AAGAGCCT  1119
      |||||||| ||||| ||||||||
seq2  GTATGCTG-GAATGAAAGAGCCT  1113