BAC Information

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BAC

Clone NameB6Ng01-116A02
Chromosome8 (Build37)
Map Location 40,524,703 - 40,655,581
singlet/doubletdoublet
Overlap geneLOC434304
Upstream geneTusc3, LOC100038974, LOC632066, EG621335
Downstream geneMsr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116A02.bB6Ng01-116A02.g
ACCDH921117DH921118
length7351,042
definitionDH921117|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A02, 5' end.DH921118|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,654,847 - 40,655,581)(40,524,703 - 40,525,748)
sequence
gaattcactgagcctgtggtgtgtctctccagctgccacttaaaaacact
tcaagttttataactttattttactggtaatataatatataattttatag
tctattgttttaaaacaatgctccgtttagaagataatatgaataactac
taactcaagcacagaactgctaatagaccataaaaaatatttgttcatat
aatcactctctgctttcttactctaccctttatctgagtataatgttaat
gtctctgtactgtaatatgcttacttttgaacttcaaaataagctctaaa
tgacttacacatctgctcagcaaaggagttataaccttccctaagtgttg
atgccagggcatattaagtggtctccctgaacatctccagaccactcata
gccgattttaataaattaaggctaatgtaaagcatttatactttcaaaag
cagacaggttggaaatataataaatgagttgtaaaacatttctgcagctg
aagattctctcaaaggaaaagcagtagagtatatgaattggttttcattt
ttatgcaatctaaatagaagagaatagaaataagaaggaaggtggtggaa
ttgaaagaaacttgactttccagcatttactctgccccaggagtcagtga
taagactgttggggaatgatagtaccttacctccttgtgcagaatgaagc
acaaggaaggagtttgggtgggggtgagggagagc
gaattcaacccagctcctgttatccttggatcctgttgtcctaagatcct
gggcatattacagtgcctggaagttgtgtctcctttgaggaccacggagc
tgtctagtcagtgatcctaagatcatgtggagagtcctctgcagactgta
ggggtgtccactgattcagcacccaaggtgacccggtgctggtgcagaca
ggaagggcgatatatttcattcatatatatataaatatatataaatcaat
caatgtaatcaatgtaagctatcaaacttatatatatatatatatacaca
catatatatatatatatacacacatatacatatatattacattaatataa
ttttgaagaaattacacatggaacaaaaatattggatttattttcaatgc
taaattatacacaccattctattctacttaagcatcattaattgtgagaa
aattgtttcttcagtctgaatataggtattagcacttaaactgttctctt
gaaggaaatctctcatttttattgatagtacatatagtttatagcaattg
tcttggtgaggtatgctttcttatcatctcagtgtcaaggataaatattt
tcaactttctttttttcataaaacttgtcgtttatattaatgcatctaaa
acagaaaatttattttgtgtataatacatgtgtcagattatataccaagg
aaaacaatggaagtaaaactacgagtctgaagatgtgacctattcattgg
tacaaagtcaccttttctgaataaaattgatttttactagaactcccaaa
atgtttaaaagtgaatctatttaataagggatggttcagtttcttaacat
taagaactattttgtggcactattataagttttcactcaacaaaactccc
aaaatttgtcaggcctagaataacatctatttttccctttgctgaaaata
cataatttatgtttttataacgtttgagtgtggggagagttatatcaatt
ttctgatgctaaactactagcatgcattctgtaaatcaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40654847_40655581
seq2: B6Ng01-116A02.b_45_779 (reverse)

seq1  GCTCTCCCTCACCCCCACCCAAACTCCTTCCTTGTGCTTCATTCTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTCACCCCCACCCAAACTCCTTCCTTGTGCTTCATTCTGCACA  50

seq1  AGGAGGTAAGGTACTATCATTCCCCAACAGTCTTATCACTGACTCCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAAGGTACTATCATTCCCCAACAGTCTTATCACTGACTCCTGGG  100

seq1  GCAGAGTAAATGCTGGAAAGTCAAGTTTCTTTCAATTCCACCACCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAAATGCTGGAAAGTCAAGTTTCTTTCAATTCCACCACCTTCCT  150

seq1  TCTTATTTCTATTCTCTTCTATTTAGATTGCATAAAAATGAAAACCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTCTATTCTCTTCTATTTAGATTGCATAAAAATGAAAACCAATT  200

seq1  CATATACTCTACTGCTTTTCCTTTGAGAGAATCTTCAGCTGCAGAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTCTACTGCTTTTCCTTTGAGAGAATCTTCAGCTGCAGAAATGT  250

seq1  TTTACAACTCATTTATTATATTTCCAACCTGTCTGCTTTTGAAAGTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACTCATTTATTATATTTCCAACCTGTCTGCTTTTGAAAGTATAA  300

seq1  ATGCTTTACATTAGCCTTAATTTATTAAAATCGGCTATGAGTGGTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTACATTAGCCTTAATTTATTAAAATCGGCTATGAGTGGTCTGGA  350

seq1  GATGTTCAGGGAGACCACTTAATATGCCCTGGCATCAACACTTAGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCAGGGAGACCACTTAATATGCCCTGGCATCAACACTTAGGGAAG  400

seq1  GTTATAACTCCTTTGCTGAGCAGATGTGTAAGTCATTTAGAGCTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACTCCTTTGCTGAGCAGATGTGTAAGTCATTTAGAGCTTATTTT  450

seq1  GAAGTTCAAAAGTAAGCATATTACAGTACAGAGACATTAACATTATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCAAAAGTAAGCATATTACAGTACAGAGACATTAACATTATACTC  500

seq1  AGATAAAGGGTAGAGTAAGAAAGCAGAGAGTGATTATATGAACAAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGGGTAGAGTAAGAAAGCAGAGAGTGATTATATGAACAAATATT  550

seq1  TTTTATGGTCTATTAGCAGTTCTGTGCTTGAGTTAGTAGTTATTCATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTCTATTAGCAGTTCTGTGCTTGAGTTAGTAGTTATTCATATT  600

seq1  ATCTTCTAAACGGAGCATTGTTTTAAAACAATAGACTATAAAATTATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAAACGGAGCATTGTTTTAAAACAATAGACTATAAAATTATATA  650

seq1  TTATATTACCAGTAAAATAAAGTTATAAAACTTGAAGTGTTTTTAAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTACCAGTAAAATAAAGTTATAAAACTTGAAGTGTTTTTAAGTGG  700

seq1  CAGCTGGAGAGACACACCACAGGCTCAGTGAATTC  735
      |||||||||||||||||||||||||||||||||||
seq2  CAGCTGGAGAGACACACCACAGGCTCAGTGAATTC  735

seq1: chr8_40524703_40525748
seq2: B6Ng01-116A02.g_68_1109

seq1  GAATTCAACCCAGCTCCTGTTATCCTTGGATCCTGTTGTCCTAAGATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCAGCTCCTGTTATCCTTGGATCCTGTTGTCCTAAGATCCT  50

seq1  GGGCATATTACAGTGCCTGGAAGTTGTGTCTCCTTTGAGGACCACGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATTACAGTGCCTGGAAGTTGTGTCTCCTTTGAGGACCACGGAGC  100

seq1  TGTCTAGTCAGTGATCCTAAGATCATGTGGAGAGTCCTCTGCAGACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTCAGTGATCCTAAGATCATGTGGAGAGTCCTCTGCAGACTGTA  150

seq1  GGGGTGTCCACTGATTCAGCACCCAAGGTGACCCGGTGCTGGTGCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTCCACTGATTCAGCACCCAAGGTGACCCGGTGCTGGTGCAGACA  200

seq1  GGAAGGGCGATATATTTCATTCATATATATATAAATATATATAAATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCGATATATTTCATTCATATATATATAAATATATATAAATCAAT  250

seq1  CAATGTAATCAATGTAAGCTATCAAACTTATATATATATATATATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAATCAATGTAAGCTATCAAACTTATATATATATATATATACACA  300

seq1  CATATATATATATATATACACACATATACATATATATTACATTAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATATATATACACACATATACATATATATTACATTAATATAA  350

seq1  TTTTGAAGAAATTACACATGGAACAAAAATATTGGATTTATTTTCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGAAATTACACATGGAACAAAAATATTGGATTTATTTTCAATGC  400

seq1  TAAATTATACACACCATTCTATTCTACTTAAGCATCATTAATTGTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATACACACCATTCTATTCTACTTAAGCATCATTAATTGTGAGAA  450

seq1  AATTGTTTCTTCAGTCTGAATATAGGTATTAGCACTTAAACTGTTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTCTTCAGTCTGAATATAGGTATTAGCACTTAAACTGTTCTCTT  500

seq1  GAAGGAAATCTCTCATTTTTATTGATAGTACATATAGTTTATAGCAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATCTCTCATTTTTATTGATAGTACATATAGTTTATAGCAATTG  550

seq1  TCTTGGTGAGGTATGCTTTCTTATCATCTCAGTGTCAAGGATAAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGAGGTATGCTTTCTTATCATCTCAGTGTCAAGGATAAATATTT  600

seq1  TCAACTTTCTTTTTTTCATAAAACTTGTCGTTTATATTAATGCATCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTCTTTTTTTCATAAAACTTGTCGTTTATATTAATGCATCTAAA  650

seq1  ACAGAAAATTTATTTTGTGTATAATACATGTGTCAGATTATATACCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATTTATTTTGTGTATAATACATGTGTCAGATTATATACCAAGG  700

seq1  AAAACAATGGAAGTAAAACTACGAGTCTGAAGATGTGACCTATTCATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATGGAAGTAAAACTACGAGTCTGAAGATGTGACCTATTCATTGG  750

seq1  TACAAAGTCACC-TTTCTGAATAAAATTGA-TTTTACTAGAACTCCCAAA  798
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  TACAAAGTCACCTTTTCTGAATAAAATTGATTTTTACTAGAACTCCCAAA  800

seq1  ATGTTTAAAAGTGAATCTATTTAATAA-GGATGGTTCAGGTTTCTTAACA  847
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  ATGTTTAAAAGTGAATCTATTTAATAAGGGATGGTTCA-GTTTCTTAACA  849

seq1  TTAGGAACTA-TTTGTGGCACTATTATAAGTTTTCACTCAAC-AAACTCC  895
      ||| |||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TTAAGAACTATTTTGTGGCACTATTATAAGTTTTCACTCAACAAAACTCC  899

seq1  CAAAATTTGTCAAGCCTAGAATAACATCTATTTTTCCCTTTGCTTGAAAA  945
      |||||||||||| |||||||||||||||||||||||||||||||   |||
seq2  CAAAATTTGTCAGGCCTAGAATAACATCTATTTTTCCCTTTGCT--GAAA  947

seq1  ATACATAATTTATGTTTTTATAACGTTTGAGTGTGGGGAGAGTTTATATC  995
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATACATAATTTATGTTTTTATAACGTTTGAGTGTGGGGAGAG-TTATATC  996

seq1  AATTTTCCTGAATTTCTTAACTACTAGCATGCATTTCTGTTAAATCAATT  1045
      |||||| ||||  | || ||||||||||||||| ||||| ||||||||||
seq2  AATTTT-CTGA--TGCTAAACTACTAGCATGCA-TTCTG-TAAATCAATT  1041

seq1  T  1046
      |
seq2  T  1042