BAC Information

Click to search

BAC

Clone NameB6Ng01-116D18
Chromosome8 (Build37)
Map Location 24,830,263 - 24,891,020
singlet/doubletdoublet
Overlap geneZmat4
Upstream genePlat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116D18.bB6Ng01-116D18.g
ACCDH921283DH921284
length1,0241,201
definitionDH921283|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D18, 5' end.DH921284|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,890,386 - 24,891,020)(24,830,263 - 24,831,490)
sequence
gaattcaaaaggaaatccagcataaattcctagtagaggaaaaaaaagaa
cttagagtaaagtagaagtgtggagcttgggagatggctcagtgagtaca
tgtggagcttggatgatggctcagtgagtacatgtggagcttgggagatg
gctcagtgagtacatgtgtactacaaaggcataagatctaagtcaagatc
ctcagaactcaagtgtataaagatggatacagtagtgtgtttctgcaacc
cccgtactcccacagcaagatgagagaaagagacaagaaaaatcctcaga
aatacatatgagcagcatgcatatacaaatagattaaaataaccacaaca
aaactaagtagtagacatagaagaagtaaaaccattctcaacctgagtaa
atgcaactaccaagagccttgggttgggatgatactcggggttaaaggtt
aaaggttcccaagatgcagtcattctttgtgtgtgatgctgccgtggaga
acaagaagaggaccaacttcaggctgctaatggaaagaatgaacacatga
tgaacaacagctgaacgtcacaggaaaacagaattcacagctgcaggaaa
tggcccaggaaactaaccaatgacccacagtaagcagtcccacaggcaaa
ctactgtctgtaggaaaagaagccaaaaatgtgtatcaatcagcttcaaa
aaaaaccagaatatggttaattattgataaattacctaattttatctcca
tttccaactgaacatcagctgggagaaaaaaatctaaaactaatcataga
tttcttcacttgcagtgaagccaacaagacttccctgtgcccacaggatc
ctgactggacacatccgaatttcattttttccattgtaaaccttcctgct
ccactgccagcctgtggttggtgatggtgggtgactctccattgtagaag
ctccgtataagcatgttttgcatgttatcattagtgagtgatcttcagac
taataataaatgcaaaagaaagaa
gaattctctaagggccattgggtatgcagtggagggcactgccccccccc
accaacttgtagatatttttgagggggcagtttttaatctctgtgaaagt
taggatgagaactctgcttggaatcgtgtgagcatagcacgagagcctga
ggggttttgtgtcatctggcaccaaggctaatagcagccagcagagaagc
tcataatgtctctgatgagctccagtgggcgccattaggattccgggcat
cctggctctgctgagtaaaacacagcttgtcagaaaaatattacggggct
ggaatggcttctggtctggacaaaccatttacaaagagcctaagttaaat
gggcaggtggccaagttttgaagtctagtgtcatttgaaatgcacacgaa
cagtgggggatggcagaaaaccgtgaatgccaatgtgtttcagtgagtgg
tgggagttccagactgtgcgggtgagcaggaccctgtacaaactctattt
cccaagtgtcctgcctgcccttgagttgtgatggcctttcacacaacccg
cattatagatctgtaaggcgtggctgtgtggacattacagaaataagtct
cgcagaaaggaaatcaaccctttaaaattaacctttttatgactaacaga
tctttaaaaaacattagccccttaaaagtggttacttgttaatatttagc
ctttcagagtaccctgcatggtttctcctctttgttctctctcgtgtcca
aattgaccactgtgggtatccagccaagacttctgtctgcctctttgttc
tgctttaagttccagaagcatcctgacatcctgggccatgctatggtctg
gcagcccttagggagtcagaaaatcacagtatcctgcagaggtcccttct
tccctgtctaccagctccacctgcaggcttaaggccccagagctgggtag
agaaaaagaagcattcctgctgggtggaaggaaacacccaaatgctgacc
aactcgcaaaggatgtacgtggcttgcagaatctagtctttctaggtgtc
ctgggttgaggcctcattcgcattctcttactactcagtcccaccaatgt
actgaattgagttctcaggccctttatggccaggctgagatgcgtctaac
catggcatactcatttctgatgaagcattttatccctttgctgttctggc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_24890386_24891020
seq2: B6Ng01-116D18.b_42_676 (reverse)

seq1  GCTTACTGTGGGTCATTGGTTAGTTTCCTGGGCCATTTCCTGCAGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGTGGGTCATTGGTTAGTTTCCTGGGCCATTTCCTGCAGCTGTG  50

seq1  AATTCTGTTTTCCTGTGACGTTCAGCTGTTGTTCATCATGTGTTCATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTTTCCTGTGACGTTCAGCTGTTGTTCATCATGTGTTCATTCT  100

seq1  TTCCATTAGCAGCCTGAAGTTGGTCCTCTTCTTGTTCTCCACGGCAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAGCAGCCTGAAGTTGGTCCTCTTCTTGTTCTCCACGGCAGCAT  150

seq1  CACACACAAAGAATGACTGCATCTTGGGAACCTTTAACCTTTAACCCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAAGAATGACTGCATCTTGGGAACCTTTAACCTTTAACCCCGA  200

seq1  GTATCATCCCAACCCAAGGCTCTTGGTAGTTGCATTTACTCAGGTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCCCAACCCAAGGCTCTTGGTAGTTGCATTTACTCAGGTTGAGA  250

seq1  ATGGTTTTACTTCTTCTATGTCTACTACTTAGTTTTGTTGTGGTTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTACTTCTTCTATGTCTACTACTTAGTTTTGTTGTGGTTATTTT  300

seq1  AATCTATTTGTATATGCATGCTGCTCATATGTATTTCTGAGGATTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTGTATATGCATGCTGCTCATATGTATTTCTGAGGATTTTTCT  350

seq1  TGTCTCTTTCTCTCATCTTGCTGTGGGAGTACGGGGGTTGCAGAAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTCTCTCATCTTGCTGTGGGAGTACGGGGGTTGCAGAAACACA  400

seq1  CTACTGTATCCATCTTTATACACTTGAGTTCTGAGGATCTTGACTTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTATCCATCTTTATACACTTGAGTTCTGAGGATCTTGACTTAGAT  450

seq1  CTTATGCCTTTGTAGTACACATGTACTCACTGAGCCATCTCCCAAGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCCTTTGTAGTACACATGTACTCACTGAGCCATCTCCCAAGCTCC  500

seq1  ACATGTACTCACTGAGCCATCATCCAAGCTCCACATGTACTCACTGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACTCACTGAGCCATCATCCAAGCTCCACATGTACTCACTGAGCC  550

seq1  ATCTCCCAAGCTCCACACTTCTACTTTACTCTAAGTTCTTTTTTTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAAGCTCCACACTTCTACTTTACTCTAAGTTCTTTTTTTTCCTC  600

seq1  TACTAGGAATTTATGCTGGATTTCCTTTTGAATTC  635
      |||||||||||||||||||||||||||||||||||
seq2  TACTAGGAATTTATGCTGGATTTCCTTTTGAATTC  635

seq1: chr8_24830263_24831490
seq2: B6Ng01-116D18.g_68_1268

seq1  GAATTCTCTAAGGGCCATTGGGTATGCAGTGGAGGGCACTGCCCCCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGGGCCATTGGGTATGCAGTGGAGGGCACTGCCCCCCCCC  50

seq1  ACCAACTTGTAGATATTTTTGAGGGGGCAGTTTTTAATCTCTGTGAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTGTAGATATTTTTGAGGGGGCAGTTTTTAATCTCTGTGAAAGT  100

seq1  TAGGATGAGAACTCTGCTTGGAATCGTGTGAGCATAGCACGAGAGCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGAGAACTCTGCTTGGAATCGTGTGAGCATAGCACGAGAGCCTGA  150

seq1  GGGGTTTTGTGTCATCTGGCACCAAGGCTAATAGCAGCCAGCAGAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTGTGTCATCTGGCACCAAGGCTAATAGCAGCCAGCAGAGAAGC  200

seq1  TCATAATGTCTCTGATGAGCTCCAGTGGGCGCCATTAGGATTCCGGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGTCTCTGATGAGCTCCAGTGGGCGCCATTAGGATTCCGGGCAT  250

seq1  CCTGGCTCTGCTGAGTAAAACACAGCTTGTCAGAAAAATATTACGGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCTGCTGAGTAAAACACAGCTTGTCAGAAAAATATTACGGGGCT  300

seq1  GGAATGGCTTCTGGTCTGGACAAACCATTTACAAAGAGCCTAAGTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCTTCTGGTCTGGACAAACCATTTACAAAGAGCCTAAGTTAAAT  350

seq1  GGGCAGGTGGCCAAGTTTTGAAGTCTAGTGTCATTTGAAATGCACACGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTGGCCAAGTTTTGAAGTCTAGTGTCATTTGAAATGCACACGAA  400

seq1  CAGTGGGGGATGGCAGAAAACCGTGAATGCCAATGTGTTTCAGTGAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGGATGGCAGAAAACCGTGAATGCCAATGTGTTTCAGTGAGTGG  450

seq1  TGGGAGTTCCAGACTGTGCGGGTGAGCAGGACCCTGTACAAACTCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTCCAGACTGTGCGGGTGAGCAGGACCCTGTACAAACTCTATTT  500

seq1  CCCAAGTGTCCTGCCTGCCCTTGAGTTGTGATGGCCTTTCACACAACCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGTCCTGCCTGCCCTTGAGTTGTGATGGCCTTTCACACAACCCG  550

seq1  CATTATAGATCTGTAAGGCGTGGCTGTGTGGACATTACAGAAATAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGATCTGTAAGGCGTGGCTGTGTGGACATTACAGAAATAAGTCT  600

seq1  CGCAGAAAGGAAATCAACCCTTTAAAATTAACCTTTTTATGACTAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAAAGGAAATCAACCCTTTAAAATTAACCTTTTTATGACTAACAGA  650

seq1  TCTTTAAAAAACATTAGCCCCTTAAAAGTGGTTACTTGTTAATATTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAAACATTAGCCCCTTAAAAGTGGTTACTTGTTAATATTTAGC  700

seq1  CTTTCAGAGTACCCTGCATGGTTTCTCCTCTTTGTTCTCTCTCGTGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAGTACCCTGCATGGTTTCTCCTCTTTGTTCTCTCTCGTGTCCA  750

seq1  AATTGACCACTGTGGGTATCCAGCCAAGACTTCTGTCTGCCTCTTTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACCACTGTGGGTATCCAGCCAAGACTTCTGTCTGCCTCTTTGTTC  800

seq1  TGCTTTAAGTTCCAGAAGCATCCTGACATCCTGGGCCATGCTATGGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAGTTCCAGAAGCATCCTGACATCCTGGGCCATGCTATGGTCTG  850

seq1  GCAGCCCTAAGGGAGTCAGAAAATCACAGTATCCTGCAGAGGTCCC-TCC  899
      |||||||| ||||||||||||||||||||||||||||||||||||| || 
seq2  GCAGCCCTTAGGGAGTCAGAAAATCACAGTATCCTGCAGAGGTCCCTTCT  900

seq1  TCCCTGTCTACCAGCTCCACCTGCAGGCTTAAGGCCCCAGAGCTGGGTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCTACCAGCTCCACCTGCAGGCTTAAGGCCCCAGAGCTGGGTAG  950

seq1  AGAAAAAGGAAGCATTCCTGCTGGGTGGAAGGAAACACCCAAATGCCTGA  999
      ||||||| ||||||||||||||||||||||||||||||||||||| ||| 
seq2  AGAAAAA-GAAGCATTCCTGCTGGGTGGAAGGAAACACCCAAATG-CTG-  997

seq1  ACCAACTCGCCAAAGGATGTACGTGGCTTGCAGAATCCTAGTCTTTCTAG  1049
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  ACCAACTCG-CAAAGGATGTACGTGGCTTGCAGAAT-CTAGTCTTTCTAG  1045

seq1  GTGTCCTGGTTTGAGGCCTCATTCGGCATGCTCTTACTACTTCAAGTTCC  1099
      ||||||||| |||||||||||||| |||| |||||||||| |||   |||
seq2  GTGTCCTGGGTTGAGGCCTCATTC-GCATTCTCTTACTAC-TCA--GTCC  1091

seq1  CACCATGGTACCTGATTTGATGTCCTCAGGGCCCCCTTATATGGCCCAGG  1149
      |||||  ||| |||| |||| || ||||||   ||||| ||||| |||||
seq2  CACCAATGTA-CTGAATTGA-GTTCTCAGG---CCCTT-TATGG-CCAGG  1134

seq1  CTGATGTGCGTTTCTAACACTTGCATACCCATTT-TCATGATGGAAGGGA  1198
      ||||  ||||  ||||||  | |||||| ||||| | |||| | |     
seq2  CTGAGATGCG--TCTAACCATGGCATACTCATTTCTGATGAAGCA-----  1177

seq1  CTTTTTTCTCTCCTTTGTGCTGTTCTGGCT  1228
         |||| || ||||  |||||||||||||
seq2  ---TTTTATC-CCTT--TGCTGTTCTGGCT  1201