BAC Information

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BAC

Clone NameB6Ng01-117A23
Chromosome8 (Build37)
Map Location 53,403,264 - 53,404,244
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935
Downstream gene1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117A23.bB6Ng01-117A23.g
ACCDH921897DH921898
length911993
definitionDH921897|Mus musculus domesticus DNA, BAC clone: B6Ng01-117A23, 5' end.DH921898|Mus musculus domesticus DNA, BAC clone: B6Ng01-117A23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcaatttctttcttcagagatttgaagttcttgtcatatagat
tttccacctgcttggttagagtcataccaaggtatttaaattattgtgac
tattgtgaagggtcatgtccctaatttctttctcagcctgtttattcttt
gagtagaggaaggctactaacttgtttgaaataaatttatatccggctct
tttgctgaagttgtatatcaggtttaggagttctctggtggaattttggg
gattatttaagtatattatcatatcatgtgcaaatagtgatagcaaatag
tgatatttttacttcttcctttccaatttgtatccatttgactttttttt
ttttttttttttttttggtttaatttctctggctaggacttccagaacaa
tattgaacagatagggagagaatcggcagccttgtctagtctctgatttt
agtgagattgattcaagtttgtctctgtttagtttgatgttggctactgc
tttgctgtatattacctttactatgtttagttataggccttgaattccta
tttttcccaagacttttatcatgaatgggtgatggattttgacaaatgct
tgctcagcatctaatgaaatgatcatgtgtgtgcgtttttatttttcctt
tgagtttatgtagagggttatgttgatagatttccatatattgaaccatc
cctgcatccctgggatgaagcctacttgatcgtggtgaatgatcattttt
gtgtgtgcatgtgtgttcttggattcagtttgcaagaattttattattga
gtatttttgcatccatattcataagggaaattgtttgaagttctctttct
ttgttgggtcttttgtgtggttgggtatcagagttattgtggcttcatag
aatgaatgggt
gaattcacctatttgtgttcttttggacttctttcaattatttactttta
tctttatattcttttctttccttttttctcttctcttttcctcttccttt
ctgtctctttctttctttctttctttctttctttctttctttctttcttt
ctttctctctctctctctctctttctctctctctctctttctttctttct
tacatgctaatattgttgtgggttttctgtaagatgttattcattctcct
catcacccctttcaagatcaaatcacagatgttgacccattcagttggcg
atcctgctagtataggtgtcccgtttcaggaatatcattccccatgtgca
gttcagggaaacttgcatctgtgttttttatactggatacatccatcttt
tcttcttgtttaatatagttcattgtgttgaaagaaagcttcatactcac
attttgtaggtattttgaggctaatactaagcatatagtctcatagcact
tctctggatttcccaaatgtgtaattaagagagagtctgaatcgcctata
caatccccccttcccctactccccaacctacctctcctgcttcctagtcc
tggcatttcccctatattggggcatagaatcttcacaggaccaaagccct
ctcctcccatttgatggactaggccatcctctgctacatatgcagctaga
gacatgagctctagctcatgttagttagttctcgtttgttgtttcctcct
acatgattgcagaccccttcagctccttgggatacctttttctagcttct
tcattgggggaccctgtgtttccattcaatagatgactgtgagcatccaa
ttttctgtatttgccaggcactggcatagcctcacagggagacagctatt
atcagggtcctgtcaacaaaatcttgctggcaatatgcatagtgtctggg
gtttgtgtttgtttattgaaatggatccccaggtggggaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53403264_53404244
seq2: B6Ng01-117A23.g_69_1061 (reverse)

seq1  GACTACCCCACCTGGGGATCCA-TTCAATAAACAAACACCAACCCCAGAC  49
      |||| ||||||||||||||||| |||||||||||||||| ||||||||||
seq2  GACTTCCCCACCTGGGGATCCATTTCAATAAACAAACACAAACCCCAGAC  50

seq1  ACTATTGCATA-TGCCAGCAAGATTTTGTTGACAGGACCCTGAT-ATAGC  97
      |||| |||||| |||||||||||||||||||||||||||||||| |||||
seq2  ACTA-TGCATATTGCCAGCAAGATTTTGTTGACAGGACCCTGATAATAGC  99

seq1  TGTCT-CCTGTGAGGCTATGCCAGTGCCTGGCAAATACAG--AAGTGGAT  144
      ||||| ||||||||||||||||||||||||||||||||||  || |||||
seq2  TGTCTCCCTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAAATTGGAT  149

seq1  GCTCACAGTCATCTATTGGATGG-AACACAGGGT-CCCCAATGAAGCAGC  192
      |||||||||||||||||| |||| |||||||||| ||||||||||| |||
seq2  GCTCACAGTCATCTATTGAATGGAAACACAGGGTCCCCCAATGAAGAAGC  199

seq1  TAG-AAAAGGTAT-CCAAGGAGCTGAAGGGGTCTGCAATCATGTAGGAGG  240
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGGTATCCCAAGGAGCTGAAGGGGTCTGCAATCATGTAGGAGG  249

seq1  -AACAAC-AACGAGAACTAACTAACATGAGCTAGAGCTCATGTCTCTAGC  288
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAAACGAGAACTAACTAACATGAGCTAGAGCTCATGTCTCTAGC  299

seq1  TGCATATGTAGCAGAGGATGGCCTAGTCCATC-AATGGGAGGAGAGGGCT  337
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCATATGTAGCAGAGGATGGCCTAGTCCATCAAATGGGAGGAGAGGGCT  349

seq1  TTGGTCCTGTGAAGATTCTATGCCCCAATATAGGGGAAATGCCAGGACTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGTGAAGATTCTATGCCCCAATATAGGGGAAATGCCAGGACTA  399

seq1  GGAAGCAGGAGAGGTAGGTTGGGGAGTAGGGGAAGGGGGGATTGTATAGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGAGAGGTAGGTTGGGGAGTAGGGGAAGGGGGGATTGTATAGG  449

seq1  CGATTCAGACTCTCTCTTAATTACACATTTGGGAAATCCAGAGAAGTGCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCAGACTCTCTCTTAATTACACATTTGGGAAATCCAGAGAAGTGCT  499

seq1  ATGAGACTATATGCTTAGTATTAGCCTCAAAATACCTACAAAATGTGAGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTATATGCTTAGTATTAGCCTCAAAATACCTACAAAATGTGAGT  549

seq1  ATGAAGCTTTCTTTCAACACAATGAACTATATTAAACAAGAAGAAAAGAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTTTCTTTCAACACAATGAACTATATTAAACAAGAAGAAAAGAT  599

seq1  GGATGTATCCAGTATAAAAAACACAGATGCAAGTTTCCCTGAACTGCACA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTATCCAGTATAAAAAACACAGATGCAAGTTTCCCTGAACTGCACA  649

seq1  TGGGGAATGATATTCCTGAAACGGGACACCTATACTAGCAGGATCGCCAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATGATATTCCTGAAACGGGACACCTATACTAGCAGGATCGCCAA  699

seq1  CTGAATGGGTCAACATCTGTGATTTGATCTTGAAAGGGGTGATGAGGAGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGGTCAACATCTGTGATTTGATCTTGAAAGGGGTGATGAGGAGA  749

seq1  ATGAATAACATCTTACAGAAAACCCACAACAATATTAGCATGTAAGAAAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAACATCTTACAGAAAACCCACAACAATATTAGCATGTAAGAAAG  799

seq1  AAAGAAAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAAAGAAAGAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAAAGAAAGAA  849

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGACAGAAAGGA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGACAGAAAGGA  899

seq1  AGAGGAAAAGAGAAGAGAAAAAAGGAAAGAAAAGAATATAAAGATAAAAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAAGAGAAGAGAAAAAAGGAAAGAAAAGAATATAAAGATAAAAG  949

seq1  TAAATAATTGAAAGAAGTCCAAAAGAACACAAATAGGTGAATTC  981
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTGAAAGAAGTCCAAAAGAACACAAATAGGTGAATTC  993