BAC Information

Click to search

BAC

Clone NameB6Ng01-117L04
Chromosome8 (Build37)
Map Location 120,726,789 - 120,866,555
singlet/doubletdoublet
Overlap geneCdh13
Upstream geneGan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117L04.bB6Ng01-117L04.g
ACCDH922371DH922372
length534332
definitionDH922371|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L04, 5' end.DH922372|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,726,789 - 120,727,328)(120,866,224 - 120,866,555)
sequence
cccgggagagctgagacttcgctatctctgtcctcacagcatttggtgcc
tacattgctgcaacagtgcgtactgtgctgtgccggactttctttgtttt
tttgtttgttttattgtttgtgtgtgtgtgtgtccccgagattccagtcc
aagttcctgagtgcctgagatggagattcgtttgcctctgtcagccccac
gccacattctaatcttgccatgtcagtggctatgatacccaggtgttgac
aaaaaggaataaaggaatgactgcgtgaggaggcgtcagtcctgtccgat
caactctgtgtcctggtggcagtaactactctattagctgtcaaaaccat
tcctgtgctttgtaggagctcaagtaagcacttgggggttggcgtggaaa
actaaatgtgtaaacaaaggagtgaatggattagggaaaaaaatagagca
cagacatgtgacaaccccagactgtttttgagcaaaaccatcaaaggtga
ctggcgggctttgtgcttgttggggggggggggg
aagtggcgaccttagggctccggtggtactttggattgataacaaactac
agtgtcttcctatccctgctttcccatgaaaggaatctcaggatggaaca
gagcctgctagcaggaggcagtgtggaaggcagtgcttgtcagcaagtca
ctgatggcaaggtcctgtggatgaggacttgcattccgaagggtctatgc
tatcatctgcctggggagccttccagagcaccgtgtgggagacgggcatg
aggcacagtcccttgacactggaggaggacctacagggcagagttcgagt
caatgctacacctgggggtggggggtggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_120726789_120727328
seq2: B6Ng01-117L04.b_48_587

seq1  GAATTCCCCGGGAGAGCTGAGACTTCGCTATCTCTGTCCTCACAGCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGGGAGAGCTGAGACTTCGCTATCTCTGTCCTCACAGCATTT  50

seq1  GGTGCCTACATTGCTGCAACAGTGCGTACTGTGCTGTGCCGGACTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTACATTGCTGCAACAGTGCGTACTGTGCTGTGCCGGACTTTCTT  100

seq1  TGTTTTTTTGTTTGTTTTATTGTTTGTGTGTGTGTGTGTCCCCGAGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTGTTTGTTTTATTGTTTGTGTGTGTGTGTGTCCCCGAGATTC  150

seq1  CAGTCCAAGTTCCTGAGTGCCTGAGATGGAGATTCGTTTGCCTCTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAGTTCCTGAGTGCCTGAGATGGAGATTCGTTTGCCTCTGTCAG  200

seq1  CCCCACGCCACATTCTAATCTTGCCATGTCAGTGGCTATGATACCCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGCCACATTCTAATCTTGCCATGTCAGTGGCTATGATACCCAGGT  250

seq1  GTTGACAAAAAGGAATAAAGGAATGACTGCGTGAGGAGGCGTCAGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAAAAAGGAATAAAGGAATGACTGCGTGAGGAGGCGTCAGTCCTG  300

seq1  TCCGATCAACTCTGTGTCCTGGTGGCAGTAACTACTCTATTAGCTGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCAACTCTGTGTCCTGGTGGCAGTAACTACTCTATTAGCTGTCAA  350

seq1  AACCATTCCTGTGCTTTGTAGGAGCTCAAGTAAGCACTTGGGGGTTGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCCTGTGCTTTGTAGGAGCTCAAGTAAGCACTTGGGGGTTGGCG  400

seq1  TGGAAAACTAAATGTGTAAACAAAGGAGTGAATGGATTAGGGAAAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACTAAATGTGTAAACAAAGGAGTGAATGGATTAGGGAAAAAAAT  450

seq1  AGAGCACAGACATGTGACAACCCCAGACTGTTTTTGAGCAAAACCATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAGACATGTGACAACCCCAGACTGTTTTTGAGCAAAACCATCAA  500

seq1  AGGTGACTGGCGGGCTTTGTGCTTGTTGGGGGGGGGGGGG  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTGGCGGGCTTTGTGCTTGTTGGGGGGGGGGGGG  540

seq1: chr8_120866224_120866555
seq2: B6Ng01-117L04.g_74_405 (reverse)

seq1  CACCCCACCCCCCACCCCCAGGTGTAGCATTGACTCGAACTCTGCCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCCCCACCCCCAGGTGTAGCATTGACTCGAACTCTGCCCTGT  50

seq1  AGGTCCTCCTCCAGTGTCAAGGGACTGTGCCTCATGCCCGTCTCCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCCTCCAGTGTCAAGGGACTGTGCCTCATGCCCGTCTCCCACAC  100

seq1  GGTGCTCTGGAAGGCTCCCCAGGCAGATGATAGCATAGACCCTTCGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTGGAAGGCTCCCCAGGCAGATGATAGCATAGACCCTTCGGAAT  150

seq1  GCAAGTCCTCATCCACAGGACCTTGCCATCAGTGACTTGCTGACAAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCTCATCCACAGGACCTTGCCATCAGTGACTTGCTGACAAGCAC  200

seq1  TGCCTTCCACACTGCCTCCTGCTAGCAGGCTCTGTTCCATCCTGAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCACACTGCCTCCTGCTAGCAGGCTCTGTTCCATCCTGAGATTC  250

seq1  CTTTCATGGGAAAGCAGGGATAGGAAGACACTGTAGTTTGTTATCAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGGGAAAGCAGGGATAGGAAGACACTGTAGTTTGTTATCAATCC  300

seq1  AAAGTACCACCGGAGCCCTAAGGTCGCCACTT  332
      ||||||||||||||||||||||||||||||||
seq2  AAAGTACCACCGGAGCCCTAAGGTCGCCACTT  332