BAC Information

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BAC

Clone NameB6Ng01-117N16
Chromosome8 (Build37)
Map Location 54,441,088 - 54,598,684
singlet/doubletdoublet
Overlap geneAga
Upstream gene1190028D05Rik, LOC676688
Downstream geneNeil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117N16.bB6Ng01-117N16.g
ACCDH922487DH922488
length1,2011,058
definitionDH922487|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N16, 5' end.DH922488|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,597,478 - 54,598,684)(54,441,088 - 54,442,165)
sequence
gaattcaaagaggttggctcttagtggaaactatttaaaaaacttatcag
taactatttttctctgtgtaaaaaatatgccatctttaagagagataact
gaaactatttggagacagttgaactttaaagtattttgaattacagctta
acatttcttcatttctgtttttctcatcttgtgagctagggtcttgccat
ctagccctaagcccaaatgaaaatccatgtacaagtctaggcatgtctac
aagtctgggtcttcctaccacagctacctgagagctgaaattacaggcat
atgtcactcattagattactaaaatatgcatatttcacactctcaatgag
aacaagtatcccagcaagcctcagcagagtattacagtggcaaatgactt
catgtgggtgaattaatctcaccttcatgcagcttctgagataatatttt
ataattataattctcattttcagaagaaaagcacagacatggatgaagta
attcattcaaggccacacagtatatttcagaagttgcccagtttcaaaaa
ggcatttctctaaggtgtccacgtttcttgtttgtgttttgtggtgttct
ttgagtatcgagtgggtaggtattgaaaggaaagacgttttacttataat
tccatggatgttggttttaagaagtctcccctccccaacttcaatactag
taactttcacagaatcataccatgcatataaaggtggaatttctttgttt
ggttattgttaggaggtctctttcttggtctgatttctcactaactctgc
ttcccacacatccccgataacatacagattttttctgcactggattctgg
atccaacagtgtccacgaacattttatgtgatagcagtctcaagggtgtc
aaggttgggggcaataaggtacaatcccaagaaacactgaagaataattt
ggatgtattagtgataagggcagcgtcacaaacattgatcaaatacatat
gcatccgtagaaattatcaattgtttcctaaactgggaatccagaagata
atggagaaacaggaggaggctatcacaagaagtgtaaagtggaggaaaac
tttgttggcaaagaactgccacaaaagtgaagcaggtgaccctgtacagt
atagctaaaagtcaatgtaaaggtcagaacaaggggtgcaggaagcgaac
a
gaattcagtgtttctgctaagagaatactaggggatatggtatgtaatca
gagtgtggcctaccaatccaataaggagagaggagactaagagagcctgt
atccaacatagctcattaatcttcattttgatcaattccatttcctgcta
gaaaaatgactaaccccaaatagaacagtggttccttcatatatgtttat
cagttactctaagataggtaagaagcagcaaaatccctgatctaaagtag
gcagtcacctatataaggggacagaacaatctgtatcaagagacttcgat
agttcatcctcagaattcaggacacaaccaactggagtcatgacatggat
ttaataaaagactctctgcactattattgtaataagtattatcctggaat
tataaatggatgttttttttatctgaaaccaaaatctgaagaaaaggaca
gaaaagatgggagtatttaaaggcacaagagaagtaattaaccacgggta
gtcaatgatgttatgaaactgaagggaagatgtgcagtgagagagaaaat
caggttttgatgggaatcaaacagtatgaacagatgctgttcagaactca
aaagctaaagacaagtggagagatgtgagagaagatttggggctaagtct
ggaatagtatgaacttgaactcaactcagttataactctccacacaacac
ttgtcagaatagaaaagggaaggtgtgggatcagacaatagacagcttat
tcactatatatttttcagaaaatttattaaaatgatcattgtggagttat
ttcctattaactgaaacactactagatctgaaggggaaaattcataagac
tctagacctataagactcaggaaccaggaagctagaagacacacaggccc
cagccagctttatacatcagtagacattgatgggtagagagcctcttgag
tttctgataacaggactctagtgatgaaatttcatgtgtctcatcatggt
gcactgggtatttcagtgacagggtgcccaagtactcatactttagaact
tttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54597478_54598684
seq2: B6Ng01-117N16.b_46_1246 (reverse)

seq1  TGTTCTGCTTCCTGCACCACCTTG-TCTGACCTCTAACATTGGGCCTCTT  49
      ||||| |||||||||||| ||||| |||||||| | |||||  | || ||
seq2  TGTTC-GCTTCCTGCACC-CCTTGTTCTGACCT-TTACATT--GACTTTT  45

seq1  AGCTATACTTGTACAGGGTCACCTGCCTCACTTTTTGTGGCAGTCTTTTG  99
      |||||||| ||||||||||||||||| |||| ||||||||||||  ||||
seq2  AGCTATAC-TGTACAGGGTCACCTGCTTCAC-TTTTGTGGCAGTTCTTTG  93

seq1  CC-ACAAAGTTTTTCCTCCACTCTACACTTCTTGTGATAGCCTCCTTCCT  148
      || |||||| |||||||||||| |||||||||||||||||||||| ||||
seq2  CCAACAAAG-TTTTCCTCCACTTTACACTTCTTGTGATAGCCTCC-TCCT  141

seq1  GTTTCTCCATTATCTTCTGGATT-CCAGTTTAGGAAACAATTGATAATTT  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTCTCCATTATCTTCTGGATTCCCAGTTTAGGAAACAATTGATAATTT  191

seq1  CCTACGGATGCATATGTATTTGATCAATGTTTGTGACGCTGCCCTTATCA  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTACGGATGCATATGTATTTGATCAATGTTTGTGACGCTGCCCTTATCA  240

seq1  CTTATACATTCAAATTA-TCTTCAGTGTTTCTTGGGATTGTACCTTATTG  296
      || |||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  CTAATACATCCAAATTATTCTTCAGTGTTTCTTGGGATTGTACCTTATTG  290

seq1  CCCCCAACCTTGACACCCTTGAGACTGCTATCACATTAAATGTTCGTGGA  346
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCCCAACCTTGACACCCTTGAGACTGCTATCACATAAAATGTTCGTGGA  340

seq1  CACTGTTGGATCCAGAATCCAGTGCAGAAAAAATCTGTATGTTATCGGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGGATCCAGAATCCAGTGCAGAAAAAATCTGTATGTTATCGGGG  390

seq1  ATGTGTGGGAAGCAGAGTTAGTGAGAAATCAGACCAAGAAAGAGACCTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGGAAGCAGAGTTAGTGAGAAATCAGACCAAGAAAGAGACCTCC  440

seq1  TAACAATAACCAAACAAAGAAATTCCACCTTTATATGCATGGTATGATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAACCAAACAAAGAAATTCCACCTTTATATGCATGGTATGATTC  490

seq1  TGTGAAAGTTACTAGTATTGAAGTTGGGGAGGGGAGACTTCTTAAAACCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGTTACTAGTATTGAAGTTGGGGAGGGGAGACTTCTTAAAACCA  540

seq1  ACATCCATGGAATTATAAGTAAAACGTCTTTCCTTTCAATACCTACCCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATGGAATTATAAGTAAAACGTCTTTCCTTTCAATACCTACCCAC  590

seq1  TCGATACTCAAAGAACACCACAAAACACAAACAAGAAACGTGGACACCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATACTCAAAGAACACCACAAAACACAAACAAGAAACGTGGACACCTT  640

seq1  AGAGAAATGCCTTTTTGAAACTGGGCAACTTCTGAAATATACTGTGTGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATGCCTTTTTGAAACTGGGCAACTTCTGAAATATACTGTGTGGC  690

seq1  CTTGAATGAATTACTTCATCCATGTCTGTGCTTTTCTTCTGAAAATGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATGAATTACTTCATCCATGTCTGTGCTTTTCTTCTGAAAATGAGA  740

seq1  ATTATAATTATAAAATATTATCTCAGAAGCTGCATGAAGGTGAGATTAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTATAAAATATTATCTCAGAAGCTGCATGAAGGTGAGATTAAT  790

seq1  TCACCCACATGAAGTCATTTGCCACTGTAATACTCTGCTGAGGCTTGCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACATGAAGTCATTTGCCACTGTAATACTCTGCTGAGGCTTGCTG  840

seq1  GGATACTTGTTCTCATTGAGAGTGTGAAATATGCATATTTTAGTAATCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTGTTCTCATTGAGAGTGTGAAATATGCATATTTTAGTAATCTA  890

seq1  ATGAGTGACATATGCCTGTAATTTCAGCTCTCAGGTAGCTGTGGTAGGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGACATATGCCTGTAATTTCAGCTCTCAGGTAGCTGTGGTAGGAA  940

seq1  GACCCAGACTTGTAGACATGCCTAGACTTGTACATGGATTTTCATTTGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGACTTGTAGACATGCCTAGACTTGTACATGGATTTTCATTTGGG  990

seq1  CTTAGGGCTAGATGGCAAGACCCTAGCTCACAAGATGAGAAAAACAGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCTAGATGGCAAGACCCTAGCTCACAAGATGAGAAAAACAGAAA  1040

seq1  TGAAGAAATGTTAAGCTGTAATTCAAAATACTTTAAAGTTCAACTGTCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATGTTAAGCTGTAATTCAAAATACTTTAAAGTTCAACTGTCTC  1090

seq1  CAAATAGTTTCAGTTATCTCTCTTAAAGATGGCATATTTTTTACACAGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTTTCAGTTATCTCTCTTAAAGATGGCATATTTTTTACACAGAG  1140

seq1  AAAAATAGTTACTGATAAGTTTTTTAAATAGTTTCCACTAAGAGCCAACC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTTACTGATAAGTTTTTTAAATAGTTTCCACTAAGAGCCAACC  1190

seq1  TCTTTGAATTC  1207
      |||||||||||
seq2  TCTTTGAATTC  1201

seq1: chr8_54441088_54442165
seq2: B6Ng01-117N16.g_68_1125

seq1  GAATTCAGTGTTTCTGCTAAGAGAATACTAGGGGATATGGTATGTAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTTCTGCTAAGAGAATACTAGGGGATATGGTATGTAATCA  50

seq1  GAGTGTGGCCTACCAATCCAATAAGGAGAGAGGAGACTAAGAGAGCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGCCTACCAATCCAATAAGGAGAGAGGAGACTAAGAGAGCCTGT  100

seq1  ATCCAACATAGCTCATTAATCTTCATTTTGATCAATTCCATTTCCTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACATAGCTCATTAATCTTCATTTTGATCAATTCCATTTCCTGCTA  150

seq1  GAAAAATGACTAACCCCAAATAGAACAGTGGTTCCTTCATATATGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGACTAACCCCAAATAGAACAGTGGTTCCTTCATATATGTTTAT  200

seq1  CAGTTACTCTAAGATAGGTAAGAAGCAGCAAAATCCCTGATCTAAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTCTAAGATAGGTAAGAAGCAGCAAAATCCCTGATCTAAAGTAG  250

seq1  GCAGTCACCTATATAAGGGGACAGAACAATCTGTATCAAGAGACTTCGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCACCTATATAAGGGGACAGAACAATCTGTATCAAGAGACTTCGAT  300

seq1  AGTTCATCCTCAGAATTCAGGACACAACCAACTGGAGTCATGACATGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCCTCAGAATTCAGGACACAACCAACTGGAGTCATGACATGGAT  350

seq1  TTAATAAAAGACTCTCTGCACTATTATTGTAATAAGTATTATCCTGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAGACTCTCTGCACTATTATTGTAATAAGTATTATCCTGGAAT  400

seq1  TATAAATGGATGTTTTTTTTATCTGAAACCAAAATCTGAAGAAAAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGGATGTTTTTTTTATCTGAAACCAAAATCTGAAGAAAAGGACA  450

seq1  GAAAAGATGGGAGTATTTAAAGGCACAAGAGAAGTAATTAACCACGGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATGGGAGTATTTAAAGGCACAAGAGAAGTAATTAACCACGGGTA  500

seq1  GTCAATGATGTTATGAAACTGAAGGGAAGATGTGCAGTGAGAGAGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGATGTTATGAAACTGAAGGGAAGATGTGCAGTGAGAGAGAAAAT  550

seq1  CAGGTTTTGATGGGAATCAAACAGTATGAACAGATGCTGTTCAGAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTGATGGGAATCAAACAGTATGAACAGATGCTGTTCAGAACTCA  600

seq1  AAAGCTAAAGACAAGTGGAGAGATGTGAGAGAAGATTTGGGGCTAAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAGACAAGTGGAGAGATGTGAGAGAAGATTTGGGGCTAAGTCT  650

seq1  GGAATAGTATGAACTTGAACTCAACTCAGTTATAACTCTCCACACAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTATGAACTTGAACTCAACTCAGTTATAACTCTCCACACAACAC  700

seq1  TTGTCAGAATAGAAAAGGGAAGGTGTGGGATCAGACAATAGACAGCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGAATAGAAAAGGGAAGGTGTGGGATCAGACAATAGACAGCTTAT  750

seq1  TCACTATATATTTTTCAGAAAATTTATTAAAATGATCATTGTGGAGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATATATTTTTCAGAAAATTTATTAAAATGATCATTGTGGAGTTAT  800

seq1  TTCCTATTAACTGAAACACTACTAGATCTGAAGGAGGAAAATTCATAAGA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCCTATTAACTGAAACACTACTAGATCTGAAGG-GGAAAATTCATAAGA  849

seq1  CTCTAGACCTATAAGACTCAGGAACCAGAAAGCTAGAAGACACACAGGCC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCTAGACCTATAAGACTCAGGAACCAGGAAGCTAGAAGACACACAGGCC  899

seq1  CCAGCCAGCTTTATACATCAGTAGACAATTGATGGGTAGAAGAGCCTCTT  950
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  CCAGCCAGCTTTATACATCAGTAGAC-ATTGATGGGTAG-AGAGCCTCTT  947

seq1  GAGTTTCTTGATAAACAAGGAACTCTAGTGATGAAATTTTCATGTGTCTT  1000
      ||||||| |||| ||||  | ||||||||||||||| ||||||||||| |
seq2  GAGTTTC-TGAT-AACA--GGACTCTAGTGATGAAA-TTTCATGTGTC-T  991

seq1  CATTCATGGTGCACTGGGTATTTCAGTGACAGGGTTGCCCAAAAGTAACC  1050
      || ||||||||||||||||||||||||||||||| |||||  |||||  |
seq2  CA-TCATGGTGCACTGGGTATTTCAGTGACAGGG-TGCCC--AAGTACTC  1037

seq1  CACAATACTTTAAGAAACCTTTTTTTTT  1078
          ||||||| ||||  ||||||||||
seq2  ----ATACTTT-AGAA--CTTTTTTTTT  1058