BAC Information

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BAC

Clone NameB6Ng01-117N24
Chromosome8 (Build37)
Map Location 37,588,798 - 37,751,011
singlet/doubletdoublet
Overlap geneDlc1, LOC100042892
Upstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik
Downstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117N24.bB6Ng01-117N24.g
ACCDH922499DH922500
length1,053924
definitionDH922499|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N24, 5' end.DH922500|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,588,798 - 37,589,853)(37,750,085 - 37,751,011)
sequence
gaattccaggaatggatggagatctacctacctcccaacctctaaccccc
caatccaatatacttagcttgttgattgattgattgattgattgattgat
tgatttttgacagggtttctctgtgtggtcctggaactcactctgtagac
caggcttggcctcaaactcagaaatcctcctgcatctgcctcccaaatct
gggatcaaaggtgtgcaccaccaccacctgggagaggatcgaggtttcag
gaagtgaagatacagagaggaagaagagaggcgtccctgaccaggaatca
aacctgggctgcagctgtgagagcactgaatcctaaccactaggccgcca
gggagcatccctatatacttagtggttttgtccttatatagggtttagag
atgtgtggctttatcacatggtggaagcagccactattacatgactagtg
acatggaaactccattaaagtgcacgaagcatgtgccatttttgttttgt
tttgtttgttttttgagacagggaaagtatagccctggctgtcctggaac
tcattttgtagaccagactggcctcgaactcagaaatccgcctgcctctc
agaatctgagttctgggattaaaggcgttagccacttttccatgataggt
atccatgaccaatgtcctccattactatggctccatcagcctccattcac
tgctgcagtctggttccttctttcctctgtccagcctaccacaaaacacc
attccccatgttttcgttaaacaaaactcaggctgagcacacatttgcat
agctgcttgctccagaaaatctgggttccctagggcaaaagcaaccatga
gctgaagagctcagatatcaagactcagactttgtccatgaaaacaagct
tcaggaccctaatttactgcatcaaacacacagagctataacagaagaaa
aaaatgtggatggaccacagtactggcttgttttggtgtcatttgaccac
agctagaagtgttagagaggaaggagtttcagtttagcaattcctctatg
aga
gaattctctatatattctagatgcaagtactctctcaaatacatgatttt
caaattttctctaattctgtttaactgttccctggtaattgtatatttcc
tggtttgaagaaccatgacttcttttaaaagaagtcacgagtcacaataa
aaaacagagcatttttcaaaaccccatgggtgctaaatatacaatctccc
aacaaaactctaataatacaagaataagagcctagagaatgtagtcatta
gggtttcttcagtcttgttccagcaatattatttttatttgcgtatttat
gtatgtatatacgtatacatatatactatatttgaaaacacacaggggtg
tgtgtgtgtgtgtgtatgaaaggatggacacattcaatatagtagtttgt
tgtttgaacactagtttgggtacaaacaccagctgtgtaaatgctcaact
caaaatgtactaaataaagtacaaaagtcacaaatttgtaatgtcacatg
attattttatgacttgttcatttgcatatgattcctaaagttaaggaata
gtaaaaaaaaaaaaaaaaaaagtaatagatttgccacattaaatcagctc
cgacaaacagttcacaccaaccctcccaaggcctttcttcatcttcggtc
acattttaccttcgtgagtctgcctccgaggagtgccactgatgttagag
aattcagcatcacactagaactgacatctcaggtcttgaatctaacagtg
gtgcatttgaggcagcaattctgcttcctacagccaatgtgctgcgtgag
ctttggctgcatgaggtcctcgcagcccagacccaccattcagaaatcca
tcaggttctaatcaaggtccctttgggttagaggattctctggactgatc
tctgagatatctgcaattggaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_37588798_37589853
seq2: B6Ng01-117N24.b_45_1097

seq1  GAATTCCAGGAATGGATGGAGATCTACCTACCTCCCAACCTCTAACCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAATGGATGGAGATCTACCTACCTCCCAACCTCTAACCCCC  50

seq1  CAATCCAATATACTTAGCTTGTTGATTGATTGATTGATTGATTGATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAATATACTTAGCTTGTTGATTGATTGATTGATTGATTGATTGAT  100

seq1  TGATTTTTGACAGGGTTTCTCTGTGTGGTCCTGGAACTCACTCTGTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTGACAGGGTTTCTCTGTGTGGTCCTGGAACTCACTCTGTAGAC  150

seq1  CAGGCTTGGCCTCAAACTCAGAAATCCTCCTGCATCTGCCTCCCAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGGCCTCAAACTCAGAAATCCTCCTGCATCTGCCTCCCAAATCT  200

seq1  GGGATCAAAGGTGTGCACCACCACCACCTGGGAGAGGATCGAGGTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAAGGTGTGCACCACCACCACCTGGGAGAGGATCGAGGTTTCAG  250

seq1  GAAGTGAAGATACAGAGAGGAAGAAGAGAGGCGTCCCTGACCAGGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAGATACAGAGAGGAAGAAGAGAGGCGTCCCTGACCAGGAATCA  300

seq1  AACCTGGGCTGCAGCTGTGAGAGCACTGAATCCTAACCACTAGGCCGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGCTGCAGCTGTGAGAGCACTGAATCCTAACCACTAGGCCGCCA  350

seq1  GGGAGCATCCCTATATACTTAGTGGTTTTGTCCTTATATAGGGTTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCATCCCTATATACTTAGTGGTTTTGTCCTTATATAGGGTTTAGAG  400

seq1  ATGTGTGGCTTTATCACATGGTGGAAGCAGCCACTATTACATGACTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGCTTTATCACATGGTGGAAGCAGCCACTATTACATGACTAGTG  450

seq1  ACATGGAAACTCCATTAAAGTGCACGAAGCATGTGCCATTTTTGTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAACTCCATTAAAGTGCACGAAGCATGTGCCATTTTTGTTTTGT  500

seq1  TTTGTTTGTTTTTTGAGACAGGGAAAGTATAGCCCTGGCTGTCCTGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTTTGAGACAGGGAAAGTATAGCCCTGGCTGTCCTGGAAC  550

seq1  TCATTTTGTAGACCAGACTGGCCTCGAACTCAGAAATCCGCCTGCCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTAGACCAGACTGGCCTCGAACTCAGAAATCCGCCTGCCTCTC  600

seq1  AGAATCTGAGTTCTGGGATTAAAGGCGTTAGCCACTTTTCCATGATAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGAGTTCTGGGATTAAAGGCGTTAGCCACTTTTCCATGATAGGT  650

seq1  ATCCATGACCAATGTCCTCCATTACTATGGCTCCATCAGCCTCCATTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGACCAATGTCCTCCATTACTATGGCTCCATCAGCCTCCATTCAC  700

seq1  TGCTGCAGTCTGGTTCCTTCTTTCCTCTGTCCAGCCTACCACAAAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGTCTGGTTCCTTCTTTCCTCTGTCCAGCCTACCACAAAACACC  750

seq1  ATTCCCCATGTTTTCGTTAAACAAAACTCAGGCTGAGCACACA-TTGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTCCCCATGTTTTCGTTAAACAAAACTCAGGCTGAGCACACATTTGCAT  800

seq1  AGCTGCTTGCTCCAGAAAATCTGGGTTCCCTAGGGCAAAAGCAACCATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTGCTCCAGAAAATCTGGGTTCCCTAGGGCAAAAGCAACCATGA  850

seq1  GCTGAAGAGCTCAGATATCAAGACTCAGACTTTGTCCATGAAAACAAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAGCTCAGATATCAAGACTCAGACTTTGTCCATGAAAACAAGCT  900

seq1  CCAGGACCCTAATTTACTGCATCAAACACAACAGAGCTATAACAGAAAGA  949
       |||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TCAGGACCCTAATTTACTGCATCAAACAC-ACAGAGCTATAACAG-AAGA  948

seq1  AAAAAATGTGGATGGACCACAGTACTGGCTGGTTTTGGTGTCAATTTGAC  999
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  AAAAAATGTGGATGGACCACAGTACTGGCTTGTTTTGGTGTC-ATTTGAC  997

seq1  ACAAGCTAGAGTGGTTAGAGAGGAAGGAGTTTCAGTTGAGCAAATTCCTC  1049
         |||||||   |||||||||||||||||||||||| ||| ||||||||
seq2  CACAGCTAGAAGTGTTAGAGAGGAAGGAGTTTCAGTTTAGC-AATTCCTC  1046

seq1  TATGAGA  1056
      |||||||
seq2  TATGAGA  1053

seq1: chr8_37750085_37751011
seq2: B6Ng01-117N24.g_68_991 (reverse)

seq1  CATTCCAATTGCAGATTATCTCAGAGATCAGTCAGGAGAATCCTCTAGAC  50
      ||||||||||||||| |||||||||||||||||  ||||||||||||  |
seq2  CATTCCAATTGCAGA-TATCTCAGAGATCAGTCCAGAGAATCCTCTAACC  49

seq1  CCAAGGGACCTTGATTTGGAAACCTGATGGATTTCTGAATGGTGGGTCTG  100
      | |||||||||||||| |  ||||||||||||||||||||||||||||||
seq2  CAAAGGGACCTTGATTAG--AACCTGATGGATTTCTGAATGGTGGGTCTG  97

seq1  GGCTGCGAGGACCTCATGCAGCCAAAGCTCACGCAGCACATTGGCTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCGAGGACCTCATGCAGCCAAAGCTCACGCAGCACATTGGCTGTAG  147

seq1  GAAGCAGAATTGCTGCCTCAAATGCACCACTGTTAGATTCAAGACCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAATTGCTGCCTCAAATGCACCACTGTTAGATTCAAGACCTGAG  197

seq1  ATGTCAGTTCTAGTGTGATGCTGAATTCTCTAACATCAGTGGCACTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGTTCTAGTGTGATGCTGAATTCTCTAACATCAGTGGCACTCCTC  247

seq1  GGAGGCAGACTCACGAAGGTAAAATGTGACCGAAGATGAAGAAAGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGACTCACGAAGGTAAAATGTGACCGAAGATGAAGAAAGGCCTT  297

seq1  GGGAGGGTTGGTGTGAACTGTTTGTCGGAGCTGATTTAATGTGGCAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTTGGTGTGAACTGTTTGTCGGAGCTGATTTAATGTGGCAAATC  347

seq1  TATTACTTTTTTTTTTTTTTTTTTTACTATTCCTTAACTTTAGGAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTTTTTTTTTTTTTTTTTTACTATTCCTTAACTTTAGGAATCAT  397

seq1  ATGCAAATGAACAAGTCATAAAATAATCATGTGACATTACAAATTTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGAACAAGTCATAAAATAATCATGTGACATTACAAATTTGTGA  447

seq1  CTTTTGTACTTTATTTAGTACATTTTGAGTTGAGCATTTACACAGCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTACTTTATTTAGTACATTTTGAGTTGAGCATTTACACAGCTGGT  497

seq1  GTTTGTACCCAAACTAGTGTTCAAACAACAAACTACTATATTGAATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACCCAAACTAGTGTTCAAACAACAAACTACTATATTGAATGTGT  547

seq1  CCATCCTTTCATACACACACACACACACACCCCTGTGTGTTTTCAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTCATACACACACACACACACACCCCTGTGTGTTTTCAAATAT  597

seq1  AGTATATATGTATACGTATATACATACATAAATACGCAAATAAAAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATGTATACGTATATACATACATAAATACGCAAATAAAAATAAT  647

seq1  ATTGCTGGAACAAGACTGAAGAAACCCTAATGACTACATTCTCTAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGGAACAAGACTGAAGAAACCCTAATGACTACATTCTCTAGGCTC  697

seq1  TTATTCTTGTATTATTAGAGTTTTGTTGGGAGATTGTATATTTAGCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTGTATTATTAGAGTTTTGTTGGGAGATTGTATATTTAGCACCC  747

seq1  ATGGGGTTTTGAAAAATGCTCTGTTTTTTATTGTGACTCGTGACTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTTTGAAAAATGCTCTGTTTTTTATTGTGACTCGTGACTTCTTT  797

seq1  TAAAAGAAGTCATGGTTCTTCAAACCAGGAAATATACAATTACCAGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGTCATGGTTCTTCAAACCAGGAAATATACAATTACCAGGGAA  847

seq1  CAGTTAAACAGAATTAGAGAAAATTTGAAAATCATGTATTTGAGAGAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAACAGAATTAGAGAAAATTTGAAAATCATGTATTTGAGAGAGTA  897

seq1  CTTGCATCTAGAATATATAGAGAATTC  927
      |||||||||||||||||||||||||||
seq2  CTTGCATCTAGAATATATAGAGAATTC  924