BAC Information

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BAC

Clone NameB6Ng01-117O20
Chromosome8 (Build37)
Map Location 59,207,158 - 59,330,745
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
Downstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117O20.bB6Ng01-117O20.g
ACCDH922539DH922540
length1,1521,104
definitionDH922539|Mus musculus domesticus DNA, BAC clone: B6Ng01-117O20, 5' end.DH922540|Mus musculus domesticus DNA, BAC clone: B6Ng01-117O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,207,158 - 59,208,318)(59,329,634 - 59,330,745)
sequence
gaattcttttgcaagtatctgtctgtctaacaaacatccagacacaattt
tcaagccatttcacagcaatttgtttttgattggctattaattgcaaact
ggaatgttagagttcgactaagaataatggtgatttcttggcatcataaa
gatttaaagtttttcacttcactaacttggatatgagaaagtatttctta
attcttggcagtcaggcaaccacttccatggttccacttactggggttac
aatataagtttttgagttaagctgaaattttataactttggaatgtctaa
ctaagtgtctgtaaatgtggcacttctctgtaaattgaaatgaaagcgca
atctttttatacatagaaagttgggaaacagaaaattaatggtgcagtat
ttcatagtttccttaattccttcagatatgtcaacagaaataagaaaatt
aaatagatcagtcctccataaggatcctaattctatgcatttctagtttc
tatgtatgattaataattcagaggaagttttaatgacaacctcaatgcta
gaccatggtagaaagacgtgttatacgatttgcaagataatttggaaagg
tgttattctgttaaaaggaaaaactgacttttttgtttcatgagaaatcc
aaatatcagtgtcaaagagcttggtgtttctcaataaatgagaaacagga
ttggttgttcggggctatttttaggtattcacttcagttctaatttcttc
atatgacagaaattaacagcagaataaactaaaccaccactaaatcagca
tatttggcacttgaagcatttatacaaaatggccttctcaaatgcaatgc
ccttgttctcttacattacctcaattagtcacctatttcccaacacacac
ttgaagttgcagaatcattttacttttagtttgcccactttgtctagaca
attttggaagtttagatagtgtggggatagatgcaacatgggcagctgga
tcatgcatatttaaatcctgctgtctacctcttgcctcctgcatttcttc
tcatcactcaacaggcactgcccatgttattatgaagaaatgaggtatta
agaataggtaggagagttatccttaaggataaaatcattatgaggaacta
gg
gaattccaggagaaacttctgaatttaggattttaaagcttcatatagac
tgtatacgtatgtatgcatgtgttaaattattgcttttcttagtggttta
taaaataatgtcttcttaggtagacaaggcaggcagtaaaagataaagca
ggaaggagtccatccacactcaacttagtgaagcaaaaatttattgagat
cacttacagaagcatgggaaactcacaatagcttcaccactaatatgtca
tgctatagccaattaattattttcctcttgcactgtggcaattggaatgt
ctggaggaaagaagccatgtgaggtcttctgcaggcttcaagagagtctt
gtgaaactcttgagtcccgtgacactgcctttcccacaggaggaaatgct
aacagacccaatcccaggccattactgctattttgcttaaagacaggtat
ggtcatttctgacccagaggaaatagcaacattgcatgatctaggtgcag
taaccataattctagcactcaggaaagagaggcaagagtgggagtccagg
gccaatctgaactacacagtgaattcaaggctaacttacagcatcagaaa
cccttgcttcaaaaatgagatgaagcagaagaaaaggaaaatgtaggcat
aaactatggattttccccacttgattttttaattaattaattaattattt
tagttgtttacatcccaatattgccctctcccatttcccccttgcagagt
tcttccccttcgcctgtgagagagtgttccctctgggcatgccccccccc
tccctggagcatcaagtctacagaattaggtgcatcctctcccactgggg
ccagacaaggcagtcctactacatctgtgccagggggagggggtctgacc
agcccatgtatgctctttgggtggtggcttagtctctgggagctcccagt
gtccaggttagttggcactattggtcttcagtggggtgccaatcccttca
gtattttcatccttcctctaactctcctcatataagatcaacctccagtc
atgaatgctgtggtttggtatctgtctccagactgctactggtgagctta
tcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_59207158_59208318
seq2: B6Ng01-117O20.b_49_1200

seq1  GAATTCTTTTGCAAGTATCTGTCTGT-TAACAAACATCCAGACACAATTT  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCTTTTGCAAGTATCTGTCTGTCTAACAAACATCCAGACACAATTT  50

seq1  TCAAGCCATTTCACAGCAATTTGTTTTTGATTGGCTATTAATTGCAAACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCATTTCACAGCAATTTGTTTTTGATTGGCTATTAATTGCAAACT  100

seq1  GGAATGTTAGAGTTCGACTAAGAATAATGGTGATTTCTTGGCATCATAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTAGAGTTCGACTAAGAATAATGGTGATTTCTTGGCATCATAAA  150

seq1  GATTTAAAGTTTTTCACTTCACTAACTTGGATATGAGAAAGTATTTCTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAGTTTTTCACTTCACTAACTTGGATATGAGAAAGTATTTCTTA  200

seq1  ATTCTTGGCAGTCAGGCAACCACTTCCATGGTTCCACTTACTGGGGTTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGCAGTCAGGCAACCACTTCCATGGTTCCACTTACTGGGGTTAC  250

seq1  AATATAAGTTTTTGAGTTAAGCTGAAATTTTATAACTTTGGAATGTCTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGTTTTTGAGTTAAGCTGAAATTTTATAACTTTGGAATGTCTAA  300

seq1  CTAAGTGTCTGTAAATGTGGCACTTCTCTGTAAATTGAAATGAAAGCGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTCTGTAAATGTGGCACTTCTCTGTAAATTGAAATGAAAGCGCA  350

seq1  ATCTTTTTATACATAGAAAGTTGGGAAACAGAAAATTAATGGTGCAGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTATACATAGAAAGTTGGGAAACAGAAAATTAATGGTGCAGTAT  400

seq1  TTCATAGTTTCCTTAATTCCTTCAGATATGTCAACAGAAATAAGAAAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTTTCCTTAATTCCTTCAGATATGTCAACAGAAATAAGAAAATT  450

seq1  AAATAGATCAGTCCTCCATAAGGATCCTAATTCTATGCATTTCTAGTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATCAGTCCTCCATAAGGATCCTAATTCTATGCATTTCTAGTTTC  500

seq1  TATGTATGATTAATAATTCAGAGGAAGTTTTAATGACAACCTCAATGCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGATTAATAATTCAGAGGAAGTTTTAATGACAACCTCAATGCTA  550

seq1  GACCATGGTAGAAAGACGTGTTATACGATTTGCAAGATAATTTGGAAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGTAGAAAGACGTGTTATACGATTTGCAAGATAATTTGGAAAGG  600

seq1  TGTTATTCTGTTAAAAGGAAAAACTGACTTTTTTGTTTCATGAGAAATCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCTGTTAAAAGGAAAAACTGACTTTTTTGTTTCATGAGAAATCC  650

seq1  AAATATCAGTGTCAAAGAGCTTGGTGTTTCTCAATAAATGAGAAACAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAGTGTCAAAGAGCTTGGTGTTTCTCAATAAATGAGAAACAGGA  700

seq1  TTGGTTGTTCGGGGCTATTTTTAGGTATTCACTTCAGTTCTAATTTCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTCGGGGCTATTTTTAGGTATTCACTTCAGTTCTAATTTCTTC  750

seq1  ATATGACAGAAATTAACAGCAGAATAAACTAAACCACCACTAAATCAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAGAAATTAACAGCAGAATAAACTAAACCACCACTAAATCAGCA  800

seq1  TATTTGGCACTTGAAGCATTTATACAAAATGGCCTTCTCAAATGCAATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCACTTGAAGCATTTATACAAAATGGCCTTCTCAAATGCAATGC  850

seq1  CCTTGTTCTCTTACATTACCTCAATTAGTCACCTATTTCCCAACACACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCTCTTACATTACCTCAATTAGTCACCTATTTCCCAACACACAC  900

seq1  TTGAAGTTGCAGAATCAATTTTACTTTTAGTTTGCCCACTTTGTCTAGAC  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGAAGTTGCAGAATC-ATTTTACTTTTAGTTTGCCCACTTTGTCTAGAC  949

seq1  AATTTTGGAAGTTTAGATAGTGTGGGGATAGAATGCAACATGGGCAGCTG  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTTTGGAAGTTTAGATAGTGTGGGGATAG-ATGCAACATGGGCAGCTG  998

seq1  GATCATGCATATTTAAATCCTGCTTGTCTACCTCTTGCCTCCTGCATTTC  1049
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATCATGCATATTTAAATCCTGC-TGTCTACCTCTTGCCTCCTGCATTTC  1047

seq1  TTCTCATCCAACTCAAACAGCACTGCCCATGTTAATTATAGAAGAAATGA  1099
      ||||||||  ||||||   |||||||||||||| ||||| ||||||||||
seq2  TTCTCATC--ACTCAACAGGCACTGCCCATGTT-ATTAT-GAAGAAATGA  1093

seq1  GGTATAAAG-ATAGGTAGGAGAGTTACCCTAAAAGATAAAAATACATATA  1148
      ||||| ||| |||||||||||||||| ||| || |||||||      || 
seq2  GGTATTAAGAATAGGTAGGAGAGTTATCCTTAAGGATAAAA----TCATT  1139

seq1  ATGAGGAACTAGG  1161
      |||||||||||||
seq2  ATGAGGAACTAGG  1152

seq1: chr8_59329634_59330745
seq2: B6Ng01-117O20.g_68_1171 (reverse)

seq1  TTGATAGGCTCTACCAGTAGCAGTCT-GAGACAGATACAAATACCCACAG  49
      |||||| |||| |||||||||||||| ||||||||||| |  | ||||||
seq2  TTGATAAGCTC-ACCAGTAGCAGTCTGGAGACAGATACCA--AACCACAG  47

seq1  CCAATCAATGGACT-GAGGTTGGATC-TATATGAGAAGAGTTAGAGGAAG  97
       || |||   |||| |||||| |||| |||||||| ||||||||||||||
seq2  -CATTCA--TGACTGGAGGTT-GATCTTATATGAGGAGAGTTAGAGGAAG  93

seq1  GATTGAAAATACTGAAGGGATTGGCAACCCCACTGGAAGACCAATAGTGC  147
      || |||||||||||||||||||||| |||||||| |||||||||||||||
seq2  GA-TGAAAATACTGAAGGGATTGGC-ACCCCACT-GAAGACCAATAGTGC  140

seq1  CAACTAACCTGGACACTTGGGAGCTCCCAGAGACTAAGCCACCAACCAAA  197
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  CAACTAACCTGGACAC-TGGGAGCTCCCAGAGACTAAGCCACCACCCAAA  189

seq1  GAGCATACATGGGCTGGTCAGACCCCCTCCCCCTGGCACAGATGTAGTAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATACATGGGCTGGTCAGACCCCCTCCCCCTGGCACAGATGTAGTAG  239

seq1  GACTGCCTTGTCTGGCCCCAGTGGGAGAGGATGCACCTAATTCTGTAGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTTGTCTGGCCCCAGTGGGAGAGGATGCACCTAATTCTGTAGAC  289

seq1  TTGATGCTCCAGGGAGGGGGGGGGCATGCCCAGAGGGAACACTCTCTCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTCCAGGGAGGGGGGGGGCATGCCCAGAGGGAACACTCTCTCAC  339

seq1  AGGCGAAGGGGAAGAACTCTGCAAGGGGGAAATGGGAGAGGGCAATATTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAAGGGGAAGAACTCTGCAAGGGGGAAATGGGAGAGGGCAATATTG  389

seq1  GGATGTAAACAACTAAAATAATTAATTAATTAATTAAAAAATCAAGTGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAAACAACTAAAATAATTAATTAATTAATTAAAAAATCAAGTGGG  439

seq1  GAAAATCCATAGTTTATGCCTACATTTTCCTTTTCTTCTGCTTCATCTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCATAGTTTATGCCTACATTTTCCTTTTCTTCTGCTTCATCTCA  489

seq1  TTTTTGAAGCAAGGGTTTCTGATGCTGTAAGTTAGCCTTGAATTCACTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGCAAGGGTTTCTGATGCTGTAAGTTAGCCTTGAATTCACTGT  539

seq1  GTAGTTCAGATTGGCCCTGGACTCCCACTCTTGCCTCTCTTTCCTGAGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAGATTGGCCCTGGACTCCCACTCTTGCCTCTCTTTCCTGAGTG  589

seq1  CTAGAATTATGGTTACTGCACCTAGATCATGCAATGTTGCTATTTCCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTATGGTTACTGCACCTAGATCATGCAATGTTGCTATTTCCTCT  639

seq1  GGGTCAGAAATGACCATACCTGTCTTTAAGCAAAATAGCAGTAATGGCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAAATGACCATACCTGTCTTTAAGCAAAATAGCAGTAATGGCCT  689

seq1  GGGATTGGGTCTGTTAGCATTTCCTCCTGTGGGAAAGGCAGTGTCACGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGGTCTGTTAGCATTTCCTCCTGTGGGAAAGGCAGTGTCACGGG  739

seq1  ACTCAAGAGTTTCACAAGACTCTCTTGAAGCCTGCAGAAGACCTCACATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAGTTTCACAAGACTCTCTTGAAGCCTGCAGAAGACCTCACATG  789

seq1  GCTTCTTTCCTCCAGACATTCCAATTGCCACAGTGCAAGAGGAAAATAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTCCTCCAGACATTCCAATTGCCACAGTGCAAGAGGAAAATAAT  839

seq1  TAATTGGCTATAGCATGACATATTAGTGGTGAAGCTATTGTGAGTTTCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGCTATAGCATGACATATTAGTGGTGAAGCTATTGTGAGTTTCCC  889

seq1  ATGCTTCTGTAAGTGATCTCAATAAATTTTTGCTTCACTAAGTTGAGTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTGTAAGTGATCTCAATAAATTTTTGCTTCACTAAGTTGAGTGT  939

seq1  GGATGGACTCCTTCCTGCTTTATCTTTTACTGCCTGCCTTGTCTACCTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGACTCCTTCCTGCTTTATCTTTTACTGCCTGCCTTGTCTACCTAA  989

seq1  GAAGACATTATTTTATAAACCACTAAGAAAAGCAATAATTTAACACATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATTATTTTATAAACCACTAAGAAAAGCAATAATTTAACACATGC  1039

seq1  ATACATACGTATACAGTCTATATGAAGCTTTAAAATCCTAAATTCAGAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACGTATACAGTCTATATGAAGCTTTAAAATCCTAAATTCAGAAG  1089

seq1  TTTCTCCTGGAATTC  1112
      |||||||||||||||
seq2  TTTCTCCTGGAATTC  1104