BAC Information

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BAC

Clone NameB6Ng01-118L03
Chromosome8 (Build37)
Map Location 87,861,427 - 88,040,414
singlet/doubletdoublet
Overlap geneD830007F02Rik, 4921524J17Rik, Gpt2
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l
Downstream geneDnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118L03.bB6Ng01-118L03.g
ACCDH923105DH923106
length1,1961,047
definitionDH923105|Mus musculus domesticus DNA, BAC clone: B6Ng01-118L03, 5' end.DH923106|Mus musculus domesticus DNA, BAC clone: B6Ng01-118L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,861,427 - 87,862,628)(88,039,368 - 88,040,414)
sequence
gaattcagatcctttgtgcagtgtaagtgaaatggagcagacgctgctga
aatcattaaggtgagcagggtgtggtgtctgaaactgtaattccaatact
caggaggctgacacagcaggactgaggtgagtcggagaccaggataagtt
acaggatgagtttagacaagcttgagtaacagcctctgtctcaacaaaac
aaaatccagagaggtgactaataaaacataattatgtaatccagcgatgt
tttgagcacatagtcaagaaaatgaaaagtagcacactccaggagaagct
ctgtgctttgctgtgccctgttttcacacctgtgacccgagagtgggatt
ccttccacctcaagtagaaattccttgaaatcagctccactccctaatgc
tggggctggccatgggagttgctttgctaatagaatgagagtaagatttc
actgggccaatgccaagctaggccataactgttcctgtgtcactgccaca
agaagagaatgagagacacggtgcacatctgacgtcactgagggctggag
agatagctcattggttaagacccaggtccaaggccaggtgtggtggcaca
cacttttaaacacaatacaagggagggagaggcaggcagatctttgtgag
tttgagggcagcctggtctacaaatccagtaccaagacagtcatggatac
acagagaaaccctgtctcaaacaaataaacaaacaaacaaaaaaaactct
aaaaaaacaaaacaaaaggcacgggttcaattctcagaattcatatggcg
gctcacgaccattataactccagtgccagggaattcaataccttcttctg
gcctctatgggcactgtacacatgtgcacaaatatacatacaggccaaat
gtgtgtgtgtgtgtattaaaactaactagctcaatgatctcaaatagtgg
tctataggtaaatgttcacaaatagctgtctagacttttttttaagactt
gatctgcagtaattgccaagtgtggtgatcaaaatactgatctcccaggc
tagtgtcaagggtcaatcatgaaggtaactggggtgatggagatcggggg
ctatcacataacactcaactttgagctagcatcaggattcctctttagaa
attcatcttatatctgggtctctcctagatcattcgctcacactca
gaattctcagtctcccatatatacagagaatgtgtgtgtgtgtgtgtgtg
tgtgtgtacaatacaactagagtccgaaccgacagagagataatttatgt
cccaagttcataggataagaatgaacatcctcacctttgcttgcccagaa
tcattctgcctaggacgttctctatggctctagaaccatcagacctgaat
aataacaattccccctatacaagagggcttgccccctccctctctgaatg
tccccaccaatctcgggactgctcttacctcatcagccaggagaaaaagc
ttctcttcccaggcaaagtgaatcacatcttctatgcactttctgctttg
tacctggcctacaaaatccccaagaaaaccaaaatgtaggttgtaatgct
atgtaagttgtccccaaataatactcccacccaaatcacttgggtgtcct
aagttccctgaagatcccaagagaccaccctcctacctcctgggcaaggc
agcaaagccaagctccagtcatggctacaggctccactcctgaccaacgc
aatgaagtcagacacggggaaggaatggcctttcacatctggctgccatg
tgcacatgtgtgcaggatgtgtgtcttctctggaggacaggaaggcatgg
gagtgtcacagcaagcaggaactaacactgacggagtggagttcatcagg
tccctaacgctcctggactgcgcgccagcagcaagcaatgaagcaaactg
gactggttgagatggtaactgaactggagttactgaagaaaagctgtggg
tgtcttccgagaaaggcagatgcacacgcccacaaagaagtgacaagcta
atcctagctcagcatctaccctgagtgcgcaaatcagtgcttgcagaaca
ccgaatgaatgagccaggctggtgcctccggccagctgcttctgcacact
gagagaacacactgcttgttcttggcttcctcaggacgtgcctcacatca
cagggaagacacacccactacccatgtcagaagtggcttcaacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87861427_87862628
seq2: B6Ng01-118L03.b_49_1244

seq1  GAATTCAGATCCTTTGTGCAGTGTAAGTGAAATGGAGCAGACGCTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCTTTGTGCAGTGTAAGTGAAATGGAGCAGACGCTGCTGA  50

seq1  AATCATTAAGGTGAGCAGGGTGTGGTGTCTGAAACTGTAATTCCAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAAGGTGAGCAGGGTGTGGTGTCTGAAACTGTAATTCCAATACT  100

seq1  CAGGAGGCTGACACAGCAGGACTGAGGTGAGTCGGAGACCAGGATAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCTGACACAGCAGGACTGAGGTGAGTCGGAGACCAGGATAAGTT  150

seq1  ACAGGATGAGTTTAGACAAGCTTGAGTAACAGCCTCTGTCTCAACAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGAGTTTAGACAAGCTTGAGTAACAGCCTCTGTCTCAACAAAAC  200

seq1  AAAATCCAGAGAGGTGACTAATAAAACATAATTATGTAATCCAGCGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAGAGAGGTGACTAATAAAACATAATTATGTAATCCAGCGATGT  250

seq1  TTTGAGCACATAGTCAAGAAAATGAAAAGTAGCACACTCCAGGAGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCACATAGTCAAGAAAATGAAAAGTAGCACACTCCAGGAGAAGCT  300

seq1  CTGTGCTTTGCTGTGCCCTGTTTTCACACCTGTGACCCGAGAGTGGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTTGCTGTGCCCTGTTTTCACACCTGTGACCCGAGAGTGGGATT  350

seq1  CCTTCCACCTCAAGTAGAAATTCCTTGAAATCAGCTCCACTCCCTAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACCTCAAGTAGAAATTCCTTGAAATCAGCTCCACTCCCTAATGC  400

seq1  TGGGGCTGGCCATGGGAGTTGCTTTGCTAATAGAATGAGAGTAAGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGCCATGGGAGTTGCTTTGCTAATAGAATGAGAGTAAGATTTC  450

seq1  ACTGGGCCAATGCCAAGCTAGGCCATAACTGTTCCTGTGTCACTGCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCCAATGCCAAGCTAGGCCATAACTGTTCCTGTGTCACTGCCACA  500

seq1  AGAAGAGAATGAGAGACACGGTGCACATCTGACGTCACTGAGGGCTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAATGAGAGACACGGTGCACATCTGACGTCACTGAGGGCTGGAG  550

seq1  AGATAGCTCATTGGTTAAGACCCAGGTCCAAGGCCAGGTGTGGTGGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTCATTGGTTAAGACCCAGGTCCAAGGCCAGGTGTGGTGGCACA  600

seq1  CACTTTTAAACACAATACAAGGGAGGGAGAGGCAGGCAGATCTTTGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAAACACAATACAAGGGAGGGAGAGGCAGGCAGATCTTTGTGAG  650

seq1  TTTGAGGGCAGCCTGGTCTACAAATCCAGTACCAAGACAGTCATGGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGCAGCCTGGTCTACAAATCCAGTACCAAGACAGTCATGGATAC  700

seq1  ACAGAGAAACCCTGTCTCAAACAAATAAACAAACAAACAAAAAAAACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCAAACAAATAAACAAACAAACAAAAAAAACTCT  750

seq1  AAAAAAACAAAACAAAAGGCACGGGTTCAATTCTCAGAATTCATATGGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAACAAAAGGCACGGGTTCAATTCTCAGAATTCATATGGCG  800

seq1  GCTCACGACCATTATAACTCCAGTGCCAGGGAATTCAATACCTTCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGACCATTATAACTCCAGTGCCAGGGAATTCAATACCTTCTTCTG  850

seq1  GCCTCTATGGGCACTGTACACATGTGCACAAATATACATACAGGCCAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATGGGCACTGTACACATGTGCACAAATATACATACAGGCCAAAT  900

seq1  GTGTGTGTGTGTGTATTAAAACTAACTAGCTCAATGATCTCAAATAGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATTAAAACTAACTAGCTCAATGATCTCAAATAGTGG  950

seq1  TCTATAGGTAAATGTTCACAAATAGCTGTCTAGACTTTTTTTTAAAGACT  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTATAGGTAAATGTTCACAAATAGCTGTCTAGACTTTTTTTT-AAGACT  999

seq1  TGATCTGCAGTAATTGCCAAGTTGTGTGATCAAAATACTGATCTTCCCAG  1050
      ||||||||||||||||||||||   |||||||||||||||||| ||||||
seq2  TGATCTGCAGTAATTGCCAAGTGTGGTGATCAAAATACTGATC-TCCCAG  1048

seq1  GCTAGTGTCAAGGGTCCATCATGAA-GTTACT-GGGTGAT-GAGATTCGG  1097
      |||||||||||||||| |||||||| || ||| ||||||| |||| ||||
seq2  GCTAGTGTCAAGGGTCAATCATGAAGGTAACTGGGGTGATGGAGA-TCGG  1097

seq1  TGGCCTATCACATAACACTCAAACTTTTGAGCCTAGCATTCAGGATTCTT  1147
       || ||||||||||||||||||   |||||| |||||| ||||||||| |
seq2  -GGGCTATCACATAACACTCAA--CTTTGAG-CTAGCA-TCAGGATTCCT  1142

seq1  CTTTAGTAATCTCATCTTATA-CTGTGCTCTC-CCTAGATCAGTCTGCTC  1195
      |||||| ||| |||||||||| ||| | |||| ||||||||| || ||||
seq2  CTTTAGAAAT-TCATCTTATATCTG-GGTCTCTCCTAGATCATTC-GCTC  1189

seq1  ACACTCA  1202
      |||||||
seq2  ACACTCA  1196

seq1: chr8_88039368_88040414
seq2: B6Ng01-118L03.g_70_1116 (reverse)

seq1  CTGT-TTGAAGCCACTCTCTGACATGGGTAGTGGGTGTGTCTTCCCTGTG  49
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGTGTTGAAGCCACT-TCTGACATGGGTAGTGGGTGTGTCTTCCCTGTG  49

seq1  GTGTTGAGGCACGTCCTGAGGAAGCCAAGAAC-AGCAGTGTGTTCTCTCA  98
       || |||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATG-TGAGGCACGTCCTGAGGAAGCCAAGAACAAGCAGTGTGTTCTCTCA  98

seq1  GTGTGCAGAAGCAGCTGGCCGGAGGCACCAGCCTGGCTCATTCATTCGGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGAAGCAGCTGGCCGGAGGCACCAGCCTGGCTCATTCATTCGGT  148

seq1  GTTCTGCAAGCACTGATTTGCGCACTCAGGGTAGATGCTGAGCTAGGATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCAAGCACTGATTTGCGCACTCAGGGTAGATGCTGAGCTAGGATT  198

seq1  AGCTTGTCACTTCCTTGTGGGCGTGTGCATCTGCCTTTCTCGGAAGACAC  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCACTTCTTTGTGGGCGTGTGCATCTGCCTTTCTCGGAAGACAC  248

seq1  CCACAGCTTTTCTTCAGTAACTCCAGTTCAGTTACCATCTCAACCAGTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTTTTCTTCAGTAACTCCAGTTCAGTTACCATCTCAACCAGTCC  298

seq1  AGTTTGCTTCATTGCTTGCTGCTGGCGCGCAGTCCAGGAGCGTTAGGGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTTCATTGCTTGCTGCTGGCGCGCAGTCCAGGAGCGTTAGGGAC  348

seq1  CTGATGAACTCCACTCCGTCAGTGTTAGTTCCTGCTTGCTGTGACACTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAACTCCACTCCGTCAGTGTTAGTTCCTGCTTGCTGTGACACTCC  398

seq1  CATGCCTTCCTGTCCTCCAGAGAAGACACACATCCTGCACACATGTGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTCCTGTCCTCCAGAGAAGACACACATCCTGCACACATGTGCAC  448

seq1  ATGGCAGCCAGATGTGAAAGGCCATTCCTTCCCCGTGTCTGACTTCATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCCAGATGTGAAAGGCCATTCCTTCCCCGTGTCTGACTTCATTG  498

seq1  CGTTGGTCAGGAGTGGAGCCTGTAGCCATGACTGGAGCTTGGCTTTGCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGTCAGGAGTGGAGCCTGTAGCCATGACTGGAGCTTGGCTTTGCTG  548

seq1  CCTTGCCCAGGAGGTAGGAGGGTGGTCTCTTGGGATCTTCAGGGAACTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCCAGGAGGTAGGAGGGTGGTCTCTTGGGATCTTCAGGGAACTTA  598

seq1  GGACACCCAAGTGATTTGGGTGGGAGTATTATTTGGGGACAACTTACATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCCAAGTGATTTGGGTGGGAGTATTATTTGGGGACAACTTACATA  648

seq1  GCATTACAACCTACATTTTGGTTTTCTTGGGGATTTTGTAGGCCAGGTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACAACCTACATTTTGGTTTTCTTGGGGATTTTGTAGGCCAGGTAC  698

seq1  AAAGCAGAAAGTGCATAGAAGATGTGATTCACTTTGCCTGGGAAGAGAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAAGTGCATAGAAGATGTGATTCACTTTGCCTGGGAAGAGAAG  748

seq1  CTTTTTCTCCTGGCTGATGAGGTAAGAGCAGTCCCGAGATTGGTGGGGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCCTGGCTGATGAGGTAAGAGCAGTCCCGAGATTGGTGGGGAC  798

seq1  ATTCAGAGAGGGAGGGGGCAAGCCCTCTTGTATAGGGGGAATTGTTATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGAGGGAGGGGGCAAGCCCTCTTGTATAGGGGGAATTGTTATTA  848

seq1  TTCAGGTCTGATGGTTCTAGAGCCATAGAGAACGTCCTAGGCAGAATGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCTGATGGTTCTAGAGCCATAGAGAACGTCCTAGGCAGAATGAT  898

seq1  TCTGGGCAAGCAAAGGTGAGGATGTTCATTCTTATCCTATGAACTTGGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAAGCAAAGGTGAGGATGTTCATTCTTATCCTATGAACTTGGGA  948

seq1  CATAAATTATCTCTCTGTCGGTTCGGACTCTAGTTGTATTGTACACACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTATCTCTCTGTCGGTTCGGACTCTAGTTGTATTGTACACACAC  998

seq1  ACACACACACACACACACATTCTCTGTATATATGGGAGACTGAGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACATTCTCTGTATATATGGGAGACTGAGAATTC  1047