BAC Information

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BAC

Clone NameB6Ng01-119C20
Chromosome8 (Build37)
Map Location 35,872,973 - 36,040,272
singlet/doubletdoublet
Overlap geneDusp4, LOC675578, Tnks
Upstream geneGtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746
Downstream geneLOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119C20.bB6Ng01-119C20.g
ACCDH923461DH923462
length5691,139
definitionDH923461|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C20, 5' end.DH923462|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,872,973 - 35,873,547)(36,039,119 - 36,040,272)
sequence
cgcctgggactgccctgaagctggagcggcagctgccttgagcctgagcc
cttaggcttccttcctgggtgcgggccccggggtcggccgagcgcctagg
gagggaggcatatttttaatgttaaacctatggcttgcggcactctaccg
gtcctggattcggatctggagacaggcgaggccagaccagttctgagaga
tgcttcagggcgaatattgatgtaagactggacaggacaggtggcctctg
ggcaaaatgacagtcccatccgtaatgggtgcctggcccacagaaaggca
gcatttccttcaagtcgcgttttccacccccttctctcactgggccggga
ggatcaatcaccctaccccctcaaatgccaaaggccttcttcccagtcct
ctgaggtgacgctcttctaggcctggtcacaggcctggactgcttagttt
tcatctgttcaggaacagctccttccctcttctagacagaagttcagcag
cccttggaagcaagagcctaacatgataatttgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtg
gaattctaactgtgctgaagtcttcgaagtctgtatgttatttgcacgcc
tgtgtggagttgtgtggctgtgtatgtgtgtggatgtacgtgtgaaagct
cagagttggcactgggagtctttgtccattgtgctctgtgttattgactg
aagaagagcctctgattgaactcagagttgccggatatggctagtctggc
taaccagctcatatccccagggtccacattcagacctgtgaactgagagg
tgggccactacacccattctctatttccctgggcactgaagatctgaact
cccaccctaatgtttggacagcaagtattttaaacatgaagctatctccc
catctcaagcatatatactctatctatctcaagcatatatactctatcta
tctatctatctatctatctatctatctatctatctatctatctatctttg
agacaaggtttcaattacacagctctgtctaacctggaacctgctatgta
gacaggctagccttgaactcacagaggtctacctgcctctgctttttgac
tgctgagattaaaggtatatgccaccaccctagactccaaagtatacata
tgggtgatccatatttatatgaatttatagattaatagataaaatatatt
ttaaatgcctgaaattgaatagaatgaatcactaggatgttccaactgcc
ttaatggaatgtctgaatacacttcgcatctctttctatgtaaattaaca
caagcaggatgtatttgttaataaaaacataaactataaaatattttata
acataaatgtatgtccataaaataaaagccctgtcagtcctttttgtgct
tactgtaaccctcttctccttttgtaccaacattcactaaaaagttatat
ctaatttctgtttgttgtttgtttgtttgtttgagacaggtttctctgta
tagccttggctgtcctgaactcactctgtagaccaggctggctcgaactc
agaaatctgcctgcttctgcttccaggtgctggattaaggcatgtgcacc
actgcccggcatatctatgttttaatttgttctcgtttgctatctggcaa
tgctcctacctcccctaattgctctctagttacctccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_35872973_35873547
seq2: B6Ng01-119C20.b_44_618

seq1  GAATTCCGCCTGGGACTGCCCTGAAGCTGGAGCGGCAGCTGCCTTGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCCTGGGACTGCCCTGAAGCTGGAGCGGCAGCTGCCTTGAGCC  50

seq1  TGAGCCCTTAGGCTTCCTTCCTGGGTGCGGGCCCCGGGGTCGGCCGAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTTAGGCTTCCTTCCTGGGTGCGGGCCCCGGGGTCGGCCGAGCG  100

seq1  CCTAGGGAGGGAGGCATATTTTTAATGTTAAACCTATGGCTTGCGGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGAGGGAGGCATATTTTTAATGTTAAACCTATGGCTTGCGGCACT  150

seq1  CTACCGGTCCTGGATTCGGATCTGGAGACAGGCGAGGCCAGACCAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGGTCCTGGATTCGGATCTGGAGACAGGCGAGGCCAGACCAGTTCT  200

seq1  GAGAGATGCTTCAGGGCGAATATTGATGTAAGACTGGACAGGACAGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGCTTCAGGGCGAATATTGATGTAAGACTGGACAGGACAGGTGG  250

seq1  CCTCTGGGCAAAATGACAGTCCCATCCGTAATGGGTGCCTGGCCCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGCAAAATGACAGTCCCATCCGTAATGGGTGCCTGGCCCACAGA  300

seq1  AAGGCAGCATTTCCTTCAAGTCGCGTTTTCCACCCCCTTCTCTCACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCATTTCCTTCAAGTCGCGTTTTCCACCCCCTTCTCTCACTGGG  350

seq1  CCGGGAGGATCAATCACCCTACCCCCTCAAATGCCAAAGGCCTTCTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGGATCAATCACCCTACCCCCTCAAATGCCAAAGGCCTTCTTCCC  400

seq1  AGTCCTCTGAGGTGACGCTCTTCTAGGCCTGGTCACAGGCCTGGACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGAGGTGACGCTCTTCTAGGCCTGGTCACAGGCCTGGACTGCT  450

seq1  TAGTTTTCATCTGTTCAGGAACAGCTCCTTCCCTCTTCTAGACAGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCATCTGTTCAGGAACAGCTCCTTCCCTCTTCTAGACAGAAGTT  500

seq1  CAGCAGCCCTTGGAAGCAAGAGCCTAACATGATAATTTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCCTTGGAAGCAAGAGCCTAACATGATAATTTGTGTGTGTGTGT  550

seq1  GTGTGTGTGTGTGTGTGTGTGTGTG  575
      |||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTG  575

seq1: chr8_36039119_36040272
seq2: B6Ng01-119C20.g_66_1204 (reverse)

seq1  TAGGAGGTGACTAGAGAGCAAATTAGAGGGAGTAGGAGCAATGCCAGATA  50
      |||||||| |||||||||| |||||| ||  ||||||||| |||||||||
seq2  TAGGAGGTAACTAGAGAGC-AATTAGGGGAGGTAGGAGCATTGCCAGATA  49

seq1  GCAAAAGGGAAACAAAATAAAAACATTAGATATGCCGGGCAGTGGTGGCA  100
      ||||| | |||   |||| |||||| |||||||||||||||||||| |||
seq2  GCAAACGAGAA--CAAATTAAAACA-TAGATATGCCGGGCAGTGGT-GCA  95

seq1  CATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAG  150
      |||||| ||||| ||||||| | ||| ||||| |||||||||||||||||
seq2  CATGCC-TTAAT-CCAGCACCT-GGAAGCAGAAGCAGGCAGATTTCTGAG  142

seq1  TTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTAT  200
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCGA-GCCAGCCTGGTCTACAGAGTGAGTT-CAGGACAGCCAAGGCTAT  190

seq1  ACAGAGAAACCCTGTCTCAAACAAACAAACAAACAAACAAACAGAAATTT  250
      ||||||||| |||||||||||||||||||||||| |||||||||||| ||
seq2  ACAGAGAAA-CCTGTCTCAAACAAACAAACAAAC-AACAAACAGAAA-TT  237

seq1  AGATATAACTTTTTTAGTGAATGTTGGTACAAAAGGAAGAAGAGGGTTAC  300
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  AGATATAAC-TTTTTAGTGAATGTTGGTACAAAAGG-AGAAGAGGGTTAC  285

seq1  AGTAAGCACAAAAAGGACTGACAGGGCTTTTATTTTATGGACATACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCACAAAAAGGACTGACAGGGCTTTTATTTTATGGACATACATTT  335

seq1  ATGTTATAAAATATTTTATAGTTTATGTTTTTATTAACAAATACATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAAAATATTTTATAGTTTATGTTTTTATTAACAAATACATCCTG  385

seq1  CTTGTGTTAATTTACATAGAAAGAGATGCGAAGTGTATTCAGACATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTAATTTACATAGAAAGAGATGCGAAGTGTATTCAGACATTCCA  435

seq1  TTAAGGCAGTTGGAACATCCTAGTGATTCATTCTATTCAATTTCAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAGTTGGAACATCCTAGTGATTCATTCTATTCAATTTCAGGCAT  485

seq1  TTAAAATATATTTTATCTATTAATCTATAAATTCATATAAATATGGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATATTTTATCTATTAATCTATAAATTCATATAAATATGGATCA  535

seq1  CCCATATGTATACTTTGGAGTCTAGGGTGGTGGCATATACCTTTAATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGTATACTTTGGAGTCTAGGGTGGTGGCATATACCTTTAATCTC  585

seq1  AGCAGTCAAAAAGCAGAGGCAGGTAGACCTCTGTGAGTTCAAGGCTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAAAAAGCAGAGGCAGGTAGACCTCTGTGAGTTCAAGGCTAGCC  635

seq1  TGTCTACATAGCAGGTTCCAGGTTAGACAGAGCTGTGTAATTGAAACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACATAGCAGGTTCCAGGTTAGACAGAGCTGTGTAATTGAAACCTT  685

seq1  GTCTCAAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  735

seq1  TAGATAGATAGAGTATATATGCTTGAGATAGATAGAGTATATATGCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGAGTATATATGCTTGAGATAGATAGAGTATATATGCTTGA  785

seq1  GATGGGGAGATAGCTTCATGTTTAAAATACTTGCTGTCCAAACATTAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGAGATAGCTTCATGTTTAAAATACTTGCTGTCCAAACATTAGGG  835

seq1  TGGGAGTTCAGATCTTCAGTGCCCAGGGAAATAGAGAATGGGTGTAGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTCAGATCTTCAGTGCCCAGGGAAATAGAGAATGGGTGTAGTGG  885

seq1  CCCACCTCTCAGTTCACAGGTCTGAATGTGGACCCTGGGGATATGAGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCTCAGTTCACAGGTCTGAATGTGGACCCTGGGGATATGAGCTG  935

seq1  GTTAGCCAGACTAGCCATATCCGGCAACTCTGAGTTCAATCAGAGGCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCAGACTAGCCATATCCGGCAACTCTGAGTTCAATCAGAGGCTCT  985

seq1  TCTTCAGTCAATAACACAGAGCACAATGGACAAAGACTCCCAGTGCCAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTCAATAACACAGAGCACAATGGACAAAGACTCCCAGTGCCAAC  1035

seq1  TCTGAGCTTTCACACGTACATCCACACACATACACAGCCACACAACTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTTTCACACGTACATCCACACACATACACAGCCACACAACTCCA  1085

seq1  CACAGGCGTGCAAATAACATACAGACTTCGAAGACTTCAGCACAGTTAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCGTGCAAATAACATACAGACTTCGAAGACTTCAGCACAGTTAGA  1135

seq1  ATTC  1154
      ||||
seq2  ATTC  1139