BAC Information

Click to search

BAC

Clone NameB6Ng01-122E18
Chromosome8 (Build37)
Map Location 131,468,931 - 131,596,429
singlet/doubletdoublet
Overlap geneLOC100042667, Ccdc7, 1700008F21Rik
Upstream geneNrp1, LOC668494, Itgb1, LOC100042659
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122E18.bB6Ng01-122E18.g
ACCDH925759DH925760
length1,169284
definitionDH925759|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E18, 5' end.DH925760|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,595,238 - 131,596,429)(131,468,931 - 131,469,214)
sequence
gaattcagtaagcctttgttataaggtagttctggaacacttgtcaattt
cacactaatgtttgatggatgctttgcacgtttcatttctgtgattgatt
tagcttccaaattacatgtgaaaaattcagtacctccctgtaaataaaat
gttaaggcattcaaaggaaaatcccacactgttcatttattatatcaaca
aaattattcaatgaaattcatattctatgtctgttttatcgttatgctac
cagagcaagcacttcaggtgacattgttatggtgtgaatacaagcagttc
tgtacaggctcatttattggttacttatttcccaaattatggtactattt
ggacagaaactttaggagatatagtctagctgaaggaagttggtaaatga
atgctgactttgactgtttatgtctggtctacaatttcctgtctaccaga
gtgtgatcagccccaccctccatatgcttgctatcataaagctttgcttt
accatggctcagaagcatagcaccaagtacctacgtgatgaaccctctga
aactgttaatcaagcagttaattcccttcagtgggtattcattatgagat
gatttgtcacaaaaacataaaaataactgaaatagacaccacacttcttc
tgggaggtgctgacatatttttggtctttttgaatgacaagttaaataaa
aagaaaatgtttaaactcaagaatgacaacagagcagtgaaagacccatt
attgagttaaaatacacccttgacatacactgttattcccatgttgcaca
tgattaacctcatctcagagaaagtagtcacaggaaaactcaaaaatcta
ggaagtcttatggttggaaattgaataaagataatttttctgtctatctt
gcttgtttctatactatttgctccaaatgttatcaattttgtttttaaat
tttacacattttgtatgagtgaggatgagtagtgcaatatttagattgga
aattgtagcagagtatccatttaaatatagatacattataaataaatgat
acagtgatgtcatattaaataagctggatataaaatagaggttatatctg
agagttagtcatgatcatttttgaaagctgctcaagtttgatttgttatg
cagtagaaaggaagaggaa
cagggccaggaaatgggagtgggtgggttggggagcagggagaggggaag
gtataggggactttggggataacaattgaaatgtaaatgaagaagatatc
taataaaatgtattaaaaataaaataaaatattgcagtactttttcatga
taacagggcatagaacaagcagccttggctagccaaagctgaatgtagga
tattctgaaggatattgtttgtcatatttacttgaaaaatgttattacaa
ttttatttttaggggaataaaaatttccccagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_131595238_131596429
seq2: B6Ng01-122E18.b_45_1213 (reverse)

seq1  TTCCTCTTCCTACATTTCCCACAT-ACAAATCAGACTTGAGCAGCTTTTC  49
      |||||||||||   | | |  ||| |||||||| ||||||||||||||  
seq2  TTCCTCTTCCT--TTCTACTGCATAACAAATCAAACTTGAGCAGCTTTCA  48

seq1  AAAATGTATCATGACTTACTCTCAGGATATAACCTCTATTTTATAATCCC  99
      |||||| ||||||||| ||||||| ||||||||||||||||||| |||| 
seq2  AAAATG-ATCATGACTAACTCTCA-GATATAACCTCTATTTTAT-ATCC-  94

seq1  AGGCTTAATTTTATATTGACCATCACTGTATCCATTTATTTTATAATGTA  149
        |||| |||| ||| ||| ||||||||||| |||||| |||||||||||
seq2  -AGCTT-ATTTAATA-TGA-CATCACTGTAT-CATTTA-TTTATAATGTA  138

seq1  TCTATTTATTTTATAATGGATACTCCTGCTACAATTTCCAATCCTAAATA  199
      ||||  |||||   |||||||||| ||||||||||||||||| |||||||
seq2  TCTA--TATTT--AAATGGATACT-CTGCTACAATTTCCAAT-CTAAATA  182

seq1  TTTGCACTTACTTCATCCCTCACTCATACAAAATGTGGTAAAATTTAAAA  249
       |||||| ||| |||| ||||||||||||||||||| |||||||||||||
seq2  -TTGCAC-TAC-TCAT-CCTCACTCATACAAAATGT-GTAAAATTTAAAA  227

seq1  ACAAAATTGATAACATTTGGAGCAAATAGTATAGAAAACAAGCAAGATAG  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAAATTGATAACATTTGGAGCAAATAGTATAG-AAACAAGCAAGATAG  276

seq1  ACAGAAAAATTATCTTTATTCAATTTCCAACCATAAGACTTCCTAGATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAATTATCTTTATTCAATTTCCAACCATAAGACTTCCTAGATTT  326

seq1  TTGAGTTTTCCTGTGACTACCTTCTCTGAGATGAGGTTAATCATGTGCAA  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGAGTTTTCCTGTGACTACTTTCTCTGAGATGAGGTTAATCATGTGCAA  376

seq1  CATGGGAATAACAGTGTATGTCAAGGGTGTATTTTAACTCAATAATGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAATAACAGTGTATGTCAAGGGTGTATTTTAACTCAATAATGGGT  426

seq1  CTTTCACTGCTCTGTTGTCATTCTTGAGTTTAAACATTTTCTTTTTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTGCTCTGTTGTCATTCTTGAGTTTAAACATTTTCTTTTTATTT  476

seq1  AACTTGTCATTCAAAAAGACCAAAAATATGTCAGCACCTCCCAGAAGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCATTCAAAAAGACCAAAAATATGTCAGCACCTCCCAGAAGAAG  526

seq1  TGTGGTGTCTATTTCAGTTATTTTTATGTTTTTGTGACAAATCATCTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTCTATTTCAGTTATTTTTATGTTTTTGTGACAAATCATCTCAT  576

seq1  AATGAATACCCACTGAAGGGAATTAACTGCTTGATTAACAGTTTCAGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATACCCACTGAAGGGAATTAACTGCTTGATTAACAGTTTCAGAGG  626

seq1  GTTCATCACGTAGGTACTTGGTGCTATGCTTCTGAGCCATGGTAAAGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCACGTAGGTACTTGGTGCTATGCTTCTGAGCCATGGTAAAGCAA  676

seq1  AGCTTTATGATAGCAAGCATATGGAGGGTGGGGCTGATCACACTCTGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATGATAGCAAGCATATGGAGGGTGGGGCTGATCACACTCTGGTA  726

seq1  GACAGGAAATTGTAGACCAGACATAAACAGTCAAAGTCAGCATTCATTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAATTGTAGACCAGACATAAACAGTCAAAGTCAGCATTCATTTA  776

seq1  CCAACTTCCTTCAGCTAGACTATATCTCCTAAAGTTTCTGTCCAAATAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCCTTCAGCTAGACTATATCTCCTAAAGTTTCTGTCCAAATAGT  826

seq1  ACCATAATTTGGGAAATAAGTAACCAATAAATGAGCCTGTACAGAACTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAATTTGGGAAATAAGTAACCAATAAATGAGCCTGTACAGAACTGC  876

seq1  TTGTATTCACACCATAACAATGTCACCTGAAGTGCTTGCTCTGGTAGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCACACCATAACAATGTCACCTGAAGTGCTTGCTCTGGTAGCAT  926

seq1  AACGATAAAACAGACATAGAATATGAATTTCATTGAATAATTTTGTTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATAAAACAGACATAGAATATGAATTTCATTGAATAATTTTGTTGAT  976

seq1  ATAATAAATGAACAGTGTGGGATTTTCCTTTGAATGCCTTAACATTTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATGAACAGTGTGGGATTTTCCTTTGAATGCCTTAACATTTTAT  1026

seq1  TTACAGGGAGGTACTGAATTTTTCACATGTAATTTGGAAGCTAAATCAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGAGGTACTGAATTTTTCACATGTAATTTGGAAGCTAAATCAAT  1076

seq1  CACAGAAATGAAACGTGCAAAGCATCCATCAAACATTAGTGTGAAATTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATGAAACGTGCAAAGCATCCATCAAACATTAGTGTGAAATTGA  1126

seq1  CAAGTGTTCCAGAACTACCTTATAACAAAGGCTTACTGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTCCAGAACTACCTTATAACAAAGGCTTACTGAATTC  1169

seq1: chr8_131468931_131469214
seq2: B6Ng01-122E18.g_71_353

seq1  CAGGGCCAGGAAATGGGAGTGGGTGGGTTGGGGAGCAGGGAGAGGGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGGAAATGGGAGTGGGTGGGTTGGGGAGCAGGGAGAGGGGAAG  50

seq1  GTATAGGGGACTTTGGGGATAACAATTGAAATGTAAATGAAGAAGATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGGGACTTTGGGGATAACAATTGAAATGTAAATGAAGAAGATATC  100

seq1  TAATAAAATGTATTAAAAATAAAATAAAATATTGCAGTACTTTTTCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATGTATTAAAAATAAAATAAAATATTGCAGTACTTTTTCATGA  150

seq1  TAACAGGGCATAGAACAAGCAGCCTTGGCTAGCCAAAGCTGAATGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGCATAGAACAAGCAGCCTTGGCTAGCCAAAGCTGAATGTAGGA  200

seq1  TATTCTGAAGGATATTGTTTGTCATATTTACTTGAAAAACGTCATTACAA  250
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  TATTCTGAAGGATATTGTTTGTCATATTTACTTGAAAAATGTTATTACAA  250

seq1  TTTCATTTCAGAGGGGAATAAAAATTTCCCCAGA  284
      ||| ||||   |||||||||||||||||||||||
seq2  TTTTATTT-TTAGGGGAATAAAAATTTCCCCAGA  283