BAC Information

Click to search

BAC

Clone NameB6Ng01-123N08
Chromosome8 (Build37)
Map Location 125,819,631 - 125,927,265
singlet/doubletdoublet
Overlap geneFanca, Spire2, Tcf25
Upstream geneZfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276
Downstream geneMc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123N08.bB6Ng01-123N08.g
ACCDH926894DH926895
length1,122941
definitionDH926894|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N08, 5' end.DH926895|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,926,135 - 125,927,265)(125,819,631 - 125,820,574)
sequence
gaattcagttgcaaggctgagcaacacttctgaagccgatcatctgatgg
cctctcaggaaacaggcctgcaggtgggacgttcctgaaggcctggggta
tcctctgcttcactgttcctagagcatggctcttcattttggaattcgtt
gtcacgtggttgcagaatagctgctgcagctccagatgtcacatcctcat
ccggatggacttacagctgctgaaaggaagaggcaggatgccaggttttc
cgcgcttgcttgtcatttccacaacatacatccattcctaggcagtcctt
cctccccttggctgaaactcaccacaggccattccaacttggaaactcac
attgaatgaggcccatctcagcagtaaccctccccaggactgggtgtaga
tcatcccaccaaacccagggataggtgaggcaactggtgggagccatgcc
cttaggcctgccctccccaggcccctcaggcctgccctcccaggcccctg
ctgacccacgagcagaagttgtagagcctgtatccagacttcatggcctt
gccaattcatgctggagaaaaaaagacattcagcaccaattcatgtgacc
tgtgacctcttaccaggcatgtacgttgaacacggagtccctcctgtaaa
tggcccccttaggaatgggctatgacattaggctgatagatggaaacaag
tcagccctcaatattctgctgaaggggcagtgctctgggcccctgctcag
tcacatccagggccccttgccccagagcacctattaagagacctccttaa
gtgtacactggagctggaatcatgggtagttgtgagtcaccctccatgtg
tgctttaagttcacagcctgggcctctgcacagtgctttaaccccaaact
gtcccttttccatttcctggtgtaattctgtagtgtgcacctggcagtgt
attgtgtgaggtcagaggacagctaacagagcgagcttctcactgttgca
gcacatgagtcctggggactgatcaagcaatcgggctgcagcagtacgtt
aatcagaatggctcagtctaaagcgtgtttttattgtgtactcaaaccca
attcttcagtcttgaacacgta
gaattcaataaagctcccagttccccaggctgcgtccacactggtcaccc
cagaagcaagtgaaactctgttgctaaccagtaagtcagtaatcctttat
tcccacatggcttcaattaggcaccatctattgcctgtttcaaatatgga
ggcaccatgtgctgtcgcagaagtgaacaggcttgacgtggaggcacatg
ccttcaatcttaggaccgaggcaggcagtgagtttgaagccagcctgttc
tacattgagtttcagatcaaaatcagacatagacctgccctcattctatg
ccacctcagacatcatctttgacacagcatccacaccggcccgtctccca
tgatagaatatgacccctccatccccatgtgaccttgagagcaaaagggg
accaacttcaagatgcccagtaaagtactgccggcatggccatgtctcaa
acatgctgcagtgggcagatgctcccctgcagctgaacatgctgtagtcg
gaggtgctcccctgcatctgtatatgctatagttggcaggtgctccctgc
agcctgtacctacctggcctccaggacaggcattgggatcttccctgttt
gttcaaacaccatgatggccttcttaacatcctgcaccgcttggctctca
cgctaggtccatacagggcgggagagagaaagaaagaagatttgaaagcg
cgtaaagaagcatgcaaaccaggcaccaacttggctccggctgctctgag
tgttacacaccgcagcggtaaagggtgagatgggcaccattcagcctaga
acattcccagatccccaggccctgctgtgtggacacacgagccctaaggg
tcagcttagctccaaagccagtgccatctccaactgcactcgctcagcct
ctgcttctctctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_125926135_125927265
seq2: B6Ng01-123N08.b_47_1168 (reverse)

seq1  TACGTGTTTCAGACTGGATGATTGGGTTTGGAGTACACA--TAAAACACG  48
      ||||||||  |||||| |  ||||||||| |||||||||   ||||||||
seq2  TACGTGTTCAAGACTGAAGAATTGGGTTT-GAGTACACAATAAAAACACG  49

seq1  CTTTAGGACTGAGCCATTCTGATGTAACGGTACTGGCTGGCAGGCCCGAT  98
      ||||| ||||||||||||||||| |||| ||||| ||| ||| |||||||
seq2  CTTTA-GACTGAGCCATTCTGAT-TAAC-GTACT-GCT-GCA-GCCCGAT  93

seq1  GGCCTGAATTCAGTCCCCAGGACTCATGTGCTGC-ACAGTGAG-AGCTCG  146
       || |||  ||||||||||||||||||||||||| |||||||| ||||||
seq2  TGCTTGA--TCAGTCCCCAGGACTCATGTGCTGCAACAGTGAGAAGCTCG  141

seq1  CTCCTGTAGCTTGTCCTCTGACCTCCACACAATACACTGCCAGGTGCACA  196
      |||   |||| ||||||||||||| |||||||||||||||||||||||||
seq2  CTCTGTTAGC-TGTCCTCTGACCT-CACACAATACACTGCCAGGTGCACA  189

seq1  CCTACAGAATTACACCCAGGAAATGGAAAAGGGACAGTTTGGGGTTAAAG  246
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  -CTACAGAATTACA-CCAGGAAATGGAAAAGGGACAGTTTGGGGTTAAAG  237

seq1  CACTGTGCAGAGGCCCAGGCTGTGAACTTAAAGCACACATGGAGGGTGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCAGAGGCCCAGGCTGTGAACTTAAAGCACACATGGAGGGTGAC  287

seq1  TCACAACTACCCATGATTCCAGCTCCAGTGTACACTTAAGGAGGTCTCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTACCCATGATTCCAGCTCCAGTGTACACTTAAGGAGGTCTCTT  337

seq1  AATAGGTGCTCTGGGGCAAGGGGCCCTGGATGTGACTGAGCAGGGGCCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGCTCTGGGGCAAGGGGCCCTGGATGTGACTGAGCAGGGGCCCA  387

seq1  GAGCACTGCCCCTTCAGCAGAATATTGAGGGCTGACTTGTTTCCATCTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGCCCCTTCAGCAGAATATTGAGGGCTGACTTGTTTCCATCTAT  437

seq1  CAGCCTAATGTCATAGCCCATTCCTAAGGGGGCCATTTACAGGAGGGACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAATGTCATAGCCCATTCCTAAGGGGGCCATTTACAGGAGGGACT  487

seq1  CCGTGTTCAACGTACATGCCTGGTAAGAGGTCACAGGTCACATGAATTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTTCAACGTACATGCCTGGTAAGAGGTCACAGGTCACATGAATTGG  537

seq1  TGCTGAATGTCTTTTTTTCTCCAGCATGAATTGGCAAGGCCATGAAGTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGTCTTTTTTTCTCCAGCATGAATTGGCAAGGCCATGAAGTCT  587

seq1  GGATACAGGCTCTACAACTTCTGCTCGTGGGTCAGCAGGGGCCTGGGAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGGCTCTACAACTTCTGCTCGTGGGTCAGCAGGGGCCTGGGAGG  637

seq1  GCAGGCCTGAGGGGCCTGGGGAGGGCAGGCCTAAGGGCATGGCTCCCACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTGAGGGGCCTGGGGAGGGCAGGCCTAAGGGCATGGCTCCCACC  687

seq1  AGTTGCCTCACCTATCCCTGGGTTTGGTGGGATGATCTACACCCAGTCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTCACCTATCCCTGGGTTTGGTGGGATGATCTACACCCAGTCCT  737

seq1  GGGGAGGGTTACTGCTGAGATGGGCCTCATTCAATGTGAGTTTCCAAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGTTACTGCTGAGATGGGCCTCATTCAATGTGAGTTTCCAAGTT  787

seq1  GGAATGGCCTGTGGTGAGTTTCAGCCAAGGGGAGGAAGGACTGCCTAGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCCTGTGGTGAGTTTCAGCCAAGGGGAGGAAGGACTGCCTAGGA  837

seq1  ATGGATGTATGTTGTGGAAATGACAAGCAAGCGCGGAAAACCTGGCATCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTATGTTGTGGAAATGACAAGCAAGCGCGGAAAACCTGGCATCC  887

seq1  TGCCTCTTCCTTTCAGCAGCTGTAAGTCCATCCGGATGAGGATGTGACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTCCTTTCAGCAGCTGTAAGTCCATCCGGATGAGGATGTGACAT  937

seq1  CTGGAGCTGCAGCAGCTATTCTGCAACCACGTGACAACGAATTCCAAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTGCAGCAGCTATTCTGCAACCACGTGACAACGAATTCCAAAAT  987

seq1  GAAGAGCCATGCTCTAGGAACAGTGAAGCAGAGGATACCCCAGGCCTTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCATGCTCTAGGAACAGTGAAGCAGAGGATACCCCAGGCCTTCA  1037

seq1  GGAACGTCCCACCTGCAGGCCTGTTTCCTGAGAGGCCATCAGATGATCGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGTCCCACCTGCAGGCCTGTTTCCTGAGAGGCCATCAGATGATCGG  1087

seq1  CTTCAGAAGTGTTGCTCAGCCTTGCAACTGAATTC  1131
      |||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAGTGTTGCTCAGCCTTGCAACTGAATTC  1122

seq1: chr8_125819631_125820574
seq2: B6Ng01-123N08.g_67_1007

seq1  GAATTCAATAAAGCTCCCAGTTCCCCAGGCTGCGTCCACACTGGTCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAGCTCCCAGTTCCCCAGGCTGCGTCCACACTGGTCACCC  50

seq1  CAGAAGCAAGTGAAACTCTGTTGCTAACCAGTAAGTCAGTAATCCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAAGTGAAACTCTGTTGCTAACCAGTAAGTCAGTAATCCTTTAT  100

seq1  TCCCACATGGCTTCAATTAGGCACCATCTATTGCCTGTTTCAAATATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATGGCTTCAATTAGGCACCATCTATTGCCTGTTTCAAATATGGA  150

seq1  GGCACCATGTGCTGTCGCAGAAGTGAACAGGCTTGACGTGGAGGCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATGTGCTGTCGCAGAAGTGAACAGGCTTGACGTGGAGGCACATG  200

seq1  CCTTCAATCTTAGGACCGAGGCAGGCAGTGAGTTTGAAGCCAGCCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATCTTAGGACCGAGGCAGGCAGTGAGTTTGAAGCCAGCCTGTTC  250

seq1  TACATTGAGTTTCAGATCAAAATCAGACATAGACCTGCCCTCATTCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGAGTTTCAGATCAAAATCAGACATAGACCTGCCCTCATTCTATG  300

seq1  CCACCTCAGACATCATCTTTGACACAGCATCCACACCGGCCCGTCTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCAGACATCATCTTTGACACAGCATCCACACCGGCCCGTCTCCCA  350

seq1  TGATAGAATATGACCCCTCCATCCCCATGTGACCTTGAGAGCAAAAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAATATGACCCCTCCATCCCCATGTGACCTTGAGAGCAAAAGGGG  400

seq1  ACCAACTTCAAGATGCCCAGTAAAGTACTGCCGGCATGGCCATGTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTCAAGATGCCCAGTAAAGTACTGCCGGCATGGCCATGTCTCAA  450

seq1  ACATGCTGCAGTGGGCAGATGCTCCCCTGCAGCTGAACATGCTGTAGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGCAGTGGGCAGATGCTCCCCTGCAGCTGAACATGCTGTAGTCG  500

seq1  GAGGTGCTCCCCTGCATCTGTATATGCTATAGTTGGCAGGTGCTCCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTCCCCTGCATCTGTATATGCTATAGTTGGCAGGTGCTCCCTGC  550

seq1  AGCCTGTACCTACCTGGCCTCCAGGACAGGCATTGGGATCTTCCCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTACCTACCTGGCCTCCAGGACAGGCATTGGGATCTTCCCTGTTT  600

seq1  GTTCAAACACCATGATGGCCTTCTTAACATCCTGCACCGCTTGGCTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACACCATGATGGCCTTCTTAACATCCTGCACCGCTTGGCTCTCA  650

seq1  CGCTAGGTCCATACAGGGCGGGAGAGAGAAAGAAAGAAGATTTGAAAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGGTCCATACAGGGCGGGAGAGAGAAAGAAAGAAGATTTGAAAGCG  700

seq1  CGTAAAGAAGCAGGCAAACCAGGCACCAACTTGGCTCCGGCTGCTCTGAG  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGTAAAGAAGCATGCAAACCAGGCACCAACTTGGCTCCGGCTGCTCTGAG  750

seq1  TGTTACACACCGCAGCGGTAAAGGGTGAGATGGGCACCATTCAGCCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACACCGCAGCGGTAAAGGGTGAGATGGGCACCATTCAGCCTAGA  800

seq1  ACATTCCCAGATCCCCAGGCCCTGCTGTGTGGACACACGAGCCCTAAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCAGATCCCCAGGCCCTGCTGTGTGGACACACGAGCCCTAAGGG  850

seq1  TCAGCTTAGCTCCAAAAGCCAGTGCCATCTTCCAACTGCACTCGCTCAAG  900
      ||||||||||||| ||||||||||||||| ||||||||||||||||| ||
seq2  TCAGCTTAGCTCC-AAAGCCAGTGCCATC-TCCAACTGCACTCGCTC-AG  897

seq1  CCTCTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  944
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  941