BAC Information

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BAC

Clone NameB6Ng01-125D17
Chromosome8 (Build37)
Map Location 16,032,993 - 16,034,182
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneKbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125D17.bB6Ng01-125D17.g
ACCDH927925DH927926
length9191,167
definitionDH927925|Mus musculus domesticus DNA, BAC clone: B6Ng01-125D17, 5' end.DH927926|Mus musculus domesticus DNA, BAC clone: B6Ng01-125D17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgagtagtactccattgtgtaaatgtacc
acattatctgtatccattcctctgtagagggacatctgggttctttccag
gttctggctattataaataaggctgctacgaacatagtggagcatgtgtc
cttattacaagttggaacatcttctgggtatatgcccaggagaggaattg
ctggatcttcttatcttagtactatcttagtactatgtctaattttctga
ggaaccgacagactcatttccagagtggttgtaccagcttgcaatcccac
caacaatggagaagtgtccctctttctccacatcctcaccagcatctgct
gtcacctgaatttttgatgttagccattctgactggtgtgaggtggaatc
tcagagttgttttgatttgcatttccctgatgattaaggatgttgaacat
ttttttcaggtgcttcttagccattttgtattcctcagttgagaattctt
cgtttagctctgtaccccatttttaatggggttatttgattttctggagt
ctagcttcttgagttctttgtatatattgtatattagtttcctatgtgat
ttaggattggcaaagatcctttcccaatctgttggtggcctttttctctt
attgatagtgtctttttgtcttacagaagctttgcaatttttatgaggtc
ccgtttgtagattctccatcttacagcacaagccattgctgttctgttta
ggaatttttcccctgtgccaatatcttccaggcttttctccactttctcc
tctataattttcagtgtctctggttttatgtgggagttccttgatccact
tagactttagcttagtacaaggagataagaatggatcaattccagagctg
tgtcttctagttgcatatg

gaattcagcacagtacatcccttcaaatctctccactgctgttttggctt
ttagaagaccaagttttgaacagtgctctgtttcaaggatcacaagaccc
tgagttgtgaggattggttttactacagacaagaaggtgcctctcgccag
gcaaagcaaaccgaacggccagttacactgcagaggtcggagtgaggatg
aatttgtggctcctgcacagtcaggaaagtaacccaaatgggctggcagc
aaattctagcacaccatcctctccgcacctaccatttgtcccccagtcac
ccctgcctctgaagccaaatgttgtgatatagctgctcctggggggagat
gagacacactctgtctgattatgtttgccttccttgggcatggtgaaaaa
ttagccagaatgctgcttctttatgtacccaagattttgttagtgaaaag
gaccttgttggtgttaattgatttttccaaatgagactcatttataagag
ttagattcacagttttcagagacaaagaaggtaagtacattcctatacat
ttcattcctaaacgctctgctgaaataacaaacaagcttcctggtttgcc
tttcaacagggccgctcacacatttcttgtatgccaggaaccgtacgtcg
ctggaactacccttcccctttgtgcattggtaagtacacctgcacagtct
tgctaagtggccctcatccagccagcttgctttaacgtatgtccttccat
ggcccactcaaagcacccattgtccctctcagaagcacacactattagag
agcacatcacacagggggaagtcacaggcatgcaagtagctcctccctgt
gaaatccgtagttcagctttgaagggacttcagatcacgctaccaagaga
agctctgagactccagctcaaagtgcaaacaggtcaaatccatgtcagaa
tccaattataatttatgaggaagatggtagagtactgacaggctgattgg
ctttctgacatgctcctagcctcaggaaagctggtttgagaagcaagctc
agaattacagcaagtcattgaatctcagaaaccttctgttttattctaac
tgaagggccatgacagctatgttgaacaccctttctagacactgagaacc
tcggcctatttgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_16032993_16034182
seq2: B6Ng01-125D17.g_66_1232 (reverse)

seq1  CCCCACAAAATAGGCAGTGGTTCTCCAGTG-CTAGTAAGGGTGTCTACAC  49
      |||||| |||||||| | |||||| ||||| |||| |||||||| |  ||
seq2  CCCCAC-AAATAGGCCGAGGTTCT-CAGTGTCTAGAAAGGGTGT-TCAAC  47

seq1  ATAGCTGTCATGGGCCCTTCAATGTAGAATACAAACAGACCGGTTTCTGA  99
      ||||||||||| ||||||||| | ||||||| |||||||  |||||||| 
seq2  ATAGCTGTCAT-GGCCCTTCAGT-TAGAATA-AAACAGA-AGGTTTCTG-  92

seq1  AGATCCAATGACTTGCTTGTAATTCTGAGCTTTGCTTCTACAAACACGCC  149
      |||| ||||||||||| ||||||||||||| |||||||| ||||| |  |
seq2  AGATTCAATGACTTGC-TGTAATTCTGAGC-TTGCTTCT-CAAAC-CAGC  138

seq1  TTTCCTGAGGCTAAGAGCATGTTCAGAAAAGCCATTCAGCCTGTCAGTAC  199
      ||||||||||||| ||||||| |||| ||||||| |||||||||||||||
seq2  TTTCCTGAGGCTAGGAGCATG-TCAG-AAAGCCAATCAGCCTGTCAGTAC  186

seq1  TCTTACCATCTTCCTTCATAAATTAATAAATTGGGATTCTGACATGGATT  249
      || ||||||||||| ||||||||| ||||  | |||||||||||||||||
seq2  TC-TACCATCTTCC-TCATAAATT-ATAA--TTGGATTCTGACATGGATT  231

seq1  TGAACTGTTTGGCACTTTGAGCTGGGAGTCTCAGAGCTTCTCTGTGTAGC  299
      ||| |||||| |||||||||||| |||||||||||||||||||  |||||
seq2  TGACCTGTTT-GCACTTTGAGCT-GGAGTCTCAGAGCTTCTCTTGGTAGC  279

seq1  GTGATCTGAAGTCCCTTCAAAAGCTGAACTACGGAATTCCACAGGGAGGA  349
      |||||||||||||||||| ||||||||||||||| ||| |||||||||||
seq2  GTGATCTGAAGTCCCTTC-AAAGCTGAACTACGG-ATTTCACAGGGAGGA  327

seq1  GCTACTTGCATGCCTGTGACTTCCCCCTGTGTGAATGTGCTCTCTAATAG  399
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTACTTGCATGCCTGTGACTTCCCCCTGTGTG-ATGTGCTCTCTAATAG  376

seq1  TGTGTGCTTCTGAGAGGGACAATGGGTGCTTTGAGTGGGCCATGGAAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTTCTGAGAGGGACAATGGGTGCTTTGAGTGGGCCATGGAAGGA  426

seq1  CATACGTTAAAGCAAGCTGGCTGGATGAGGGCCACTTAGCAAGACTGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGTTAAAGCAAGCTGGCTGGATGAGGGCCACTTAGCAAGACTGTGC  476

seq1  AGGTGTACTTACCAATGCACAAAGGGGAAGGGTAGTTCCAGCGACGTACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTACTTACCAATGCACAAAGGGGAAGGGTAGTTCCAGCGACGTACG  526

seq1  GTTCCTGGCATACAAGAAATGTGTGAGCGGCCCTGTTGAAAGGCAAACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGCATACAAGAAATGTGTGAGCGGCCCTGTTGAAAGGCAAACCA  576

seq1  GGAAGCTTGTTTGTTATTTCAGCAGAGCGTTTAGGAATGAAATGTATAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTGTTTGTTATTTCAGCAGAGCGTTTAGGAATGAAATGTATAGG  626

seq1  AATGTACTTACCTTCTTTGTCTCTGAAAACTGTGAATCTAACTCTTATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTTACCTTCTTTGTCTCTGAAAACTGTGAATCTAACTCTTATAA  676

seq1  ATGAGTCTCATTTGGAAAAATCAATTAACACCAACAAGGTCCTTTTCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTCATTTGGAAAAATCAATTAACACCAACAAGGTCCTTTTCACT  726

seq1  AACAAAATCTTGGGTACATAAAGAAGCAGCATTCTGGCTAATTTTTCACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCTTGGGTACATAAAGAAGCAGCATTCTGGCTAATTTTTCACC  776

seq1  ATGCCCAAGGAAGGCAAACATAATCAGACAGAGTGTGTCTCATCTCCCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAAGGAAGGCAAACATAATCAGACAGAGTGTGTCTCATCTCCCCC  826

seq1  CAGGAGCAGCTATATCACAACATTTGGCTTCAGAGGCAGGGGTGACTGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAGCTATATCACAACATTTGGCTTCAGAGGCAGGGGTGACTGGG  876

seq1  GGACAAATGGTAGGTGCGGAGAGGATGGTGTGCTAGAATTTGCTGCCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATGGTAGGTGCGGAGAGGATGGTGTGCTAGAATTTGCTGCCAGC  926

seq1  CCATTTGGGTTACTTTCCTGACTGTGCAGGAGCCACAAATTCATCCTCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGGGTTACTTTCCTGACTGTGCAGGAGCCACAAATTCATCCTCAC  976

seq1  TCCGACCTCTGCAGTGTAACTGGCCGTTCGGTTTGCTTTGCCTGGCGAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACCTCTGCAGTGTAACTGGCCGTTCGGTTTGCTTTGCCTGGCGAGA  1026

seq1  GGCACCTTCTTGTCTGTAGTAAAACCAATCCTCACAACTCAGGGTCTTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTCTTGTCTGTAGTAAAACCAATCCTCACAACTCAGGGTCTTGT  1076

seq1  GATCCTTGAAACAGAGCACTGTTCAAAACTTGGTCTTCTAAAAGCCAAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTGAAACAGAGCACTGTTCAAAACTTGGTCTTCTAAAAGCCAAAA  1126

seq1  CAGCAGTGGAGAGATTTGAAGGGATGTACTGTGCTGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGGAGAGATTTGAAGGGATGTACTGTGCTGAATTC  1167


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