BAC Information

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BAC

Clone NameB6Ng01-125G22
Chromosome8 (Build37)
Map Location 38,795,882 - 38,937,999
singlet/doubletdoublet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125G22.bB6Ng01-125G22.g
ACCDH928071DH928072
length4231,044
definitionDH928071|Mus musculus domesticus DNA, BAC clone: B6Ng01-125G22, 5' end.DH928072|Mus musculus domesticus DNA, BAC clone: B6Ng01-125G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,937,571 - 38,937,999)(38,795,882 - 38,796,952)
sequence
tatgaagtcattaattcatctaaactgcatcaattcatgaaagttcatct
tcatgttgatctgccggacatttgcccaacaggttaggctgatgccacaa
atcatgaggctaaataacagtgacaggaagatgatatcagcagcgagaag
caatcctgaggtgaagtctctggggctgtgcctctctagagtgcacccat
taaaaccacacagaatggcatgccatcaccaggaaacacacatgcttgcc
atagcctttccttagatggcttctctcacctgcagcaatcagatggttca
gcaggttgatgcaggctggatgaagaagcaaaactaagtttcctgatgag
caaggcagcatccagaaagatcatgaaaaaggtgacacacatgccagatt
ccgtaagtgtgtgtgtggggagg
gaattccttaaggtgcatgaattatttttttcttaatatacaatcacact
aaatattgaaatatcaattggacatagcttctgtattagggatgtaggct
tcagttcagtcccctactcagcacaggagatcaacagctgtctaggctct
gtccatactgtcatagccctttgaattcctgtgtgcactggccttactgt
gtttagaagaccttgtttaatcaatgtgctttatctatcttactttaaaa
atctttctgcctcctcttctgtagggttccctccactttgatgataggaa
attgatgactgcttacaagtgaagaaatagttttctccaatgtcatctca
ctggaaatacaaactactctgaaggctgggattcatgtcgagcaacagat
agagaaaaaaaacttaatgaaagttttagatgttcttttatagagctttt
tttcctgcccttataggtcctttgtatatgtattatagtttccaggcttt
gtgtttgtgggatttctatgtgggtaatgtatgtatttctgcttttgtgt
gtgtttctttagcttttcttcagctctttttcttggctttgcttgttttt
gttgttgatattctgctctatactggtttgcttgcatttattttatcaaa
ttttgttttattatttttatatgtctgtttgcatcctaatgacagaggaa
agaaagtgtgtcaactttgggggacatgtagtggggggttatctggaaat
agttggggaaaggaaatcataataggaatatattaaattctattttcaaa
aatatgaaatattttctgactcctttatgatacattttctttcttactct
actgagaaacaattgattattaacatggtttcttaataagaaaccatttt
agaatgaagtatggaaatgtgacaacctgataggtcataatcatttaaca
tggtataaaaatgatgtcttaattatctagaatacataggaccagaaaga
gacaaattgggtaactgacagaattacaattaattattatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38937571_38937999
seq2: B6Ng01-125G22.b_48_476 (reverse)

seq1  CCTCCCCACACACACACTTACGGAATCTGGCATGTGTGTCACCTTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACACACACACTTACGGAATCTGGCATGTGTGTCACCTTTTTCA  50

seq1  TGATCTTTCTGGATGCTGCCTTGCTCATCAGGAAACTTAGTTTTGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCTGGATGCTGCCTTGCTCATCAGGAAACTTAGTTTTGCTTCT  100

seq1  TCATCCAGCCTGCATCAACCTGCTGAACCATCTGATTGCTGCAGGTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGCCTGCATCAACCTGCTGAACCATCTGATTGCTGCAGGTGAGA  150

seq1  GAAGCCATCTAAGGAAAGGCTATGGCAAGCATGTGTGTTTCCTGGTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATCTAAGGAAAGGCTATGGCAAGCATGTGTGTTTCCTGGTGATG  200

seq1  GCATGCCATTCTGTGTGGTTTTAATGGGTGCACTCTAGAGAGGCACAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCATTCTGTGTGGTTTTAATGGGTGCACTCTAGAGAGGCACAGCC  250

seq1  CCAGAGACTTCACCTCAGGATTGCTTCTCGCTGCTGATATCATCTTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTTCACCTCAGGATTGCTTCTCGCTGCTGATATCATCTTCCTG  300

seq1  TCACTGTTATTTAGCCTCATGATTTGTGGCATCAGCCTAACCTGTTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTATTTAGCCTCATGATTTGTGGCATCAGCCTAACCTGTTGGGC  350

seq1  AAATGTCCGGCAGATCAACATGAAGATGAACTTTCATGAATTGATGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCGGCAGATCAACATGAAGATGAACTTTCATGAATTGATGCAGT  400

seq1  TTAGATGAATTAATGACTTCATAGAATTC  429
      |||||||||||||||||||||||||||||
seq2  TTAGATGAATTAATGACTTCATAGAATTC  429

seq1: chr8_38795882_38796952
seq2: B6Ng01-125G22.g_65_1108

seq1  GAATTCCTTAAGGTGCATGAATTATTTTTTTCTTAATATACAATCACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGGTGCATGAATTATTTTTTTCTTAATATACAATCACACT  50

seq1  AAATATTGAAATATCAATTGGACATAGCTTCTGTATTAGGGATGTAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGAAATATCAATTGGACATAGCTTCTGTATTAGGGATGTAGGCT  100

seq1  TCAGTTCAGTCCCCTACTCAGCACAGGAGATCAACAGCTGTCTAGGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCAGTCCCCTACTCAGCACAGGAGATCAACAGCTGTCTAGGCTCT  150

seq1  GTCCATACTGTCATAGCCCTTTGAATTCCTGTGTGCACTGGCCTTACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATACTGTCATAGCCCTTTGAATTCCTGTGTGCACTGGCCTTACTGT  200

seq1  GTTTAGAAGACCTTGTTTAATCAATGTGCTTTATCTATCTTACTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAAGACCTTGTTTAATCAATGTGCTTTATCTATCTTACTTTAAAA  250

seq1  ATCTTTCTGCCTCCTCTTCTGTAGGGTTCCCTCCACTTTGATGATAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGCCTCCTCTTCTGTAGGGTTCCCTCCACTTTGATGATAGGAA  300

seq1  ATTGATGACTGCTTACAAGTGAAGAAATAGTTTTCTCCAATGTCATCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGACTGCTTACAAGTGAAGAAATAGTTTTCTCCAATGTCATCTCA  350

seq1  CTGGAAATACAAACTACTCTGAAGGCTGGGATTCATGTCGAGCAACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATACAAACTACTCTGAAGGCTGGGATTCATGTCGAGCAACAGAT  400

seq1  AGAGAAAAAAAACTTAATGAAAGTTTTAGATGTTCTTTTATAGAGCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAAAACTTAATGAAAGTTTTAGATGTTCTTTTATAGAGCTTTT  450

seq1  TTTCCTGCCCTTATAGGTCCTTTGTATATGTATTATAGTTTCCAGGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCCTTATAGGTCCTTTGTATATGTATTATAGTTTCCAGGCTTT  500

seq1  GTGTTTGTGGGATTTCTATGTGGGTAATGTATGTATTTCTGCTTTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGGGATTTCTATGTGGGTAATGTATGTATTTCTGCTTTTGTGT  550

seq1  GTGTTTCTTTAGCTTTTCTTCAGCTCTTTTTCTTGGCTTTGCTTGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTTAGCTTTTCTTCAGCTCTTTTTCTTGGCTTTGCTTGTTTTT  600

seq1  GTTGTTGATATTCTGCTCTATACTGGTTTGCTTGCATTTATTTTATCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGATATTCTGCTCTATACTGGTTTGCTTGCATTTATTTTATCAAA  650

seq1  TTTTGTTTTATTATTTTTATATGTCTGTTTGCATCCTAATGACAGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTATTATTTTTATATGTCTGTTTGCATCCTAATGACAGAGGAA  700

seq1  AGAAAGTGTGTCAACTTTGGGGGACATGTAAGTGGGGGTTATCTGGAAAT  750
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  AGAAAGTGTGTCAACTTTGGGGGACATGTAGTGGGGGGTTATCTGGAAAT  750

seq1  AGTTGGGGAAAGGAAAATCATAATAGGAATATATTAAAATCTATTTTCAA  800
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  AGTTGGGGAAAGG-AAATCATAATAGGAATATATTAAATTCTATTTTCAA  799

seq1  AAATATTGAAATATTTTTCTGACTCCTTTATGATACATTTTCTTTCTTAC  850
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATA-TGAAATA-TTTTCTGACTCCTTTATGATACATTTTCTTTCTTAC  847

seq1  TCTACTGAGAAACAATTGATTATTTACATGGTTTCTTAATAAGAAAACCA  900
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  TCTACTGAGAAACAATTGATTATTAACATGGTTTCTTAATAAG-AAACCA  896

seq1  TTTAAGAAATGAAAGTATGGAAATGTGACAAACCTGATAGGGTCATAATC  950
      ||| || |||| ||||||||||||||||| ||||||||| ||||||||||
seq2  TTTTAG-AATG-AAGTATGGAAATGTGAC-AACCTGATA-GGTCATAATC  942

seq1  ATTTAACATGGTATAAAAATGATGTTCTTAATATATCTTAGGAGATACAA  1000
      |||||||||||||||||||||||| ||||||| |||||    |||   | 
seq2  ATTTAACATGGTATAAAAATGATG-TCTTAAT-TATCT----AGA---AT  983

seq1  ATAAAGAACCAGAAAAGTAGACAAAATTTGGTGTATACTTGACAGAATTA  1050
      | | || ||||||||   |||||||  |||| ||| || |||||||||| 
seq2  ACATAGGACCAGAAA--GAGACAAA--TTGG-GTA-AC-TGACAGAATT-  1025

seq1  GACAATTAAATTATTATACAT  1071
       |||||| |||||||||||||
seq2  -ACAATT-AATTATTATACAT  1044