BAC Information

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BAC

Clone NameB6Ng01-128I06
Chromosome12 (Build37)8 (Build37)
Map Location 104,908,093 - 104,909,34215,168,936 - 15,169,034
singlet/doubletsingletsinglet
Overlap geneGm46
Upstream geneItpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6
Downstream geneSerpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128I06.bB6Ng01-128I06.g
ACCDH930345DH930346
length1,204934
definitionDH930345|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I06, 5' end.DH930346|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,908,093 - 104,909,342)(15,168,936 - 15,169,034)
sequence
gaattctttacctctacagtggggagtggaatacaggaatgacacaaacc
atctttatatgacatcattctctagtgaccatgagggttcgttccttcct
gtcaccaagggattagattatatccacatgcccagcattgatgcacccaa
gctcctgtctcttccttcaccagataataagcttgatgagccaactgttt
atttccccggattagccacctctgagggacagccagctcaggacacacct
ggagttgagagtcaccatttccttgtttgcctccagagagcaccgtgagt
tctcattgttgctctctgaacaagctaggaaagggaaaccacacgcagca
ttaagcataaggagcctggcaactgggcattaacctaccatggtgaccct
caagggtgccttttgcagagtgattcctgagaggtccatgcgtttgttga
acagtttaaggctactgttaacatgcttgaaactttccagctgaagagca
acgggtatggagaatttggggaaaaacagccaccgctttctgctcaggga
aatggaagaagagaacatagttgaaatcatgttgtcgtgaaatccacccc
agccagtgcactcctggcacacaaacaagagcagctgtgtttactgcaca
ttgcaacaggcgggctgtgccagggactcctcaaggcaatttgcttcccc
ttggcaatgctggcaagtgatcagtgagcttgctctaaaatctgagatgg
gggcatctaagagtctatgagtttgttgctagcttcaggaagcagagcca
gccaaatcagaatcctcccaaatcctgagcaatgcttaggccccaatcgt
gagctttatctctcagtcagtagaacccatccttataacggggtcccatg
gactttgcatcctccatcaagagaatctcttcttgtgcttattacaaatc
tttcctccctagaacatcttttgtaaaggtcacaagtgcttgtactttgc
tgtagagtttctttctggcatgcctaagcgttttggttaattgttacgtg
aaaactttttcaacatttgactgtggcttaaggtggtaataaattaaccc
agatttcaactctgagagtttccaacagtgcttctgaagtggtgctgatt
ctgagtgtcatctcacttctaggttgggatgggaccaaaggttcactggt
gtta
gaattcaaggcacatacctaaacatgataaaagcaatctacagcaaacca
ggagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaagct
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggag
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgccggacctaaagctttactacagagcaattgtggtaaaaactgca
tggtactggtatagtgacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104908093_104909342
seq2: B6Ng01-128I06.b_46_1249

seq1  GAATTCTTTACCTCTACAGTGGGGAGTGGAATACAGGAATGACACAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCTCTACAGTGGGGAGTGGAATACAGGAATGACACAAACC  50

seq1  ATCTTTATATGACATCATTCTCTAGTGACCATGAGGGTTCGTTCCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATATGACATCATTCTCTAGTGACCATGAGGGTTCGTTCCTTCCT  100

seq1  GTCACCAAGGGATTAGATTATATCCACATGCCCAGCATTGATGCACCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAAGGGATTAGATTATATCCACATGCCCAGCATTGATGCACCCAA  150

seq1  GCTCCTGTCTCTTCCTTCACCAGATAATAAGCTTGATGAGCCAACTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTCTCTTCCTTCACCAGATAATAAGCTTGATGAGCCAACTGTTT  200

seq1  ATTTCCCCGGATTAGCCACCTCTGAGGGACAGCCAGCTCAGGACACACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCGGATTAGCCACCTCTGAGGGACAGCCAGCTCAGGACACACCT  250

seq1  GGAGTTGAGAGTCACCATTTCCTTGTTTGCCTCCAGAGAGCACCGTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGAGAGTCACCATTTCCTTGTTTGCCTCCAGAGAGCACCGTGAGT  300

seq1  TCTCATTGTTGCTCTCTGAACAAGCTAGGAAAGGGAAACCACACGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGTTGCTCTCTGAACAAGCTAGGAAAGGGAAACCACACGCAGCA  350

seq1  TTAAGCATAAGGAGCCTGGCAACTGGGCATTAACCTACCATGGTGACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATAAGGAGCCTGGCAACTGGGCATTAACCTACCATGGTGACCCT  400

seq1  CAAGGGTGCCTTTTGCAGAGTGATTCCTGAGAGGTCCATGCGTTTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGCCTTTTGCAGAGTGATTCCTGAGAGGTCCATGCGTTTGTTGA  450

seq1  ACAGTTTAAGGCTACTGTTAACATGCTTGAAACTTTCCAGCTGAAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTAAGGCTACTGTTAACATGCTTGAAACTTTCCAGCTGAAGAGCA  500

seq1  ACGGGTATGGAGAATTTGGGGAAAAACAGCCACCGCTTTCTGCTCAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTATGGAGAATTTGGGGAAAAACAGCCACCGCTTTCTGCTCAGGGA  550

seq1  AATGGAAGAAGAGAACATAGTTGAAATCATGTTGTCGTGAAATCCACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGAAGAGAACATAGTTGAAATCATGTTGTCGTGAAATCCACCCC  600

seq1  AGCCAGTGCACTCCTGGCACACAAACAAGAGCAGCTGTGTTTACTGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGCACTCCTGGCACACAAACAAGAGCAGCTGTGTTTACTGCACA  650

seq1  TTGCAACAGGCGGGCTGTGCCAGGGACTCCTCAAGGCAATTTGCTTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACAGGCGGGCTGTGCCAGGGACTCCTCAAGGCAATTTGCTTCCCC  700

seq1  TTGGCAATGCTGGCAAGTGATCAGTGAGCTTGCTCTAAAATCTGAGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATGCTGGCAAGTGATCAGTGAGCTTGCTCTAAAATCTGAGATGG  750

seq1  GGGCATCTAAGAGTCTATGAGTTTGTTGCTAGCTTCAGGAAGCAGAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTAAGAGTCTATGAGTTTGTTGCTAGCTTCAGGAAGCAGAGCCA  800

seq1  GCCAAATCAGAATCCTCCCAAATCCTGAGCAATGCTTAGGCCCCAATCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCAGAATCCTCCCAAATCCTGAGCAATGCTTAGGCCCCAATCGT  850

seq1  GAGCTTTATCTCTCAGTCAGTAGAACCCATCCTTATAACGGGGTCCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTATCTCTCAGTCAGTAGAACCCATCCTTATAACGGGGTCCCATG  900

seq1  GACTTTGCATCCTCCATCAAGAGAATCTCTTCTTGTGCTTATTACAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCATCCTCCATCAAGAGAATCTCTTCTTGTGCTTATTACAAATC  950

seq1  TTTCCTCCCTAGAACATCTTTTTGTAAAGGTCACAGGTGCTTTGTTACTT  1000
      |||||||||||||||||| |||||||||||||||| ||||||   |||||
seq2  TTTCCTCCCTAGAACATC-TTTTGTAAAGGTCACAAGTGCTT--GTACTT  997

seq1  TGCTGTAGAGTTTCTTTCTGGCCATGCCTAAAGCGTTTTTGGTTTAATTG  1050
      ||||||||||||||||||||| ||||||| |||||||||  | |||||||
seq2  TGCTGTAGAGTTTCTTTCTGG-CATGCCT-AAGCGTTTT--GGTTAATTG  1043

seq1  TTACGTGGAAAACTTTTTCCAACATTTGACTGT-GCTAAAGTGTGTAATA  1099
      |||||| ||||||||||| |||||||||||||| ||| |||   ||||| 
seq2  TTACGT-GAAAACTTTTT-CAACATTTGACTGTGGCTTAAGGTGGTAAT-  1090

seq1  AAATAAACCCAGATTTCAAACTCTGAGAGTTCCCACCCAGTGCCTTCTGA  1149
      |||| |||||||||||| ||||||||||||| |||  ||||| |||||||
seq2  AAATTAACCCAGATTTC-AACTCTGAGAGTTTCCA-ACAGTG-CTTCTGA  1137

seq1  GGTGGTGCTGA-TCTGAGTTGCATTCTTCACTTCATAGGTTAGGGGATGG  1198
       |||||||||| |||||||  |||   ||||||| ||||||  |||||||
seq2  AGTGGTGCTGATTCTGAGTGTCAT--CTCACTTC-TAGGTT--GGGATGG  1182

seq1  GACACAAAGGTACACT-GTTTTAAACCTTGCCAGCCCTTGAGCTGTAGTG  1247
      ||| ||||||| |||| || |||                           
seq2  GAC-CAAAGGTTCACTGGTGTTA---------------------------  1204

seq1  TTA  1250
         
seq2  ---  1204

seq1: chr8_15168936_15169034
seq2: B6Ng01-128I06.g_801_899 (reverse)

seq1  CATTGGTCTACTTGTCAGTCGCTATACCAGTACCATGAAGTTTTTATCAC  50
      |||||||||||||||| ||| |||||||||||||||| |||||||| |||
seq2  CATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTACCAC  50

seq1  AATTGCTCTGTAGTACAGCTTTAGGTCAGACATGGTGATTCCACCAGAG  99
      ||||||||||||||| ||||||||||| | |||||||||||||||||||
seq2  AATTGCTCTGTAGTAAAGCTTTAGGTCCGGCATGGTGATTCCACCAGAG  99