BAC Information

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BAC

Clone NameB6Ng01-130B06
Chromosome8 (Build37)
Map Location 85,872,134 - 85,921,354
singlet/doubletdoublet
Overlap gene4933434I20Rik, Clgn
Upstream geneIl15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2
Downstream geneScoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130B06.bB6Ng01-130B06.g
ACCDH931485DH931486
length370978
definitionDH931485|Mus musculus domesticus DNA, BAC clone: B6Ng01-130B06, 5' end.DH931486|Mus musculus domesticus DNA, BAC clone: B6Ng01-130B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,872,134 - 85,872,503)(85,920,360 - 85,921,354)
sequence
tcgcaggaaattaccctaagatgataatgtctggtcatggccaggcagcg
cagggctgacccacagtttttcacagccttgccaaaggattgtaaagtgt
ggtcaagaggggaccacgatgtgcctgggagaaagtgttggggacctgag
gaccgtagcaacggccccttgggagggcgagcaagcacgcggggtcaagg
acgcaggctcagtgcctgtgcagcctggtgttggcagtgacgctgccacg
atgaaggccaagaacgttaacttgctcttcgccttcgttgccgtcctgct
ctttggtttctcgtgtttctgcatctccaggatgaaccaaaccagtaagc
gggggtggggggggcggggg
gaattcagtctgctcggctttgctggtgtctgcgggagtaagtatgcaca
ccacagctgtggtctcagtgggaactgggatggagcacacatctggctcc
cagcaggggagtggggcacagtaaccagtagttattatccctcacagagg
tgcataccatctctgtggctgcaacagaaactcagagctgtctagtcaat
tgcccctgttaatctctaccttagagaataagcaaatgctgtgtgcattc
caaatttgtgtctctttgtataaatacatagctttaaattatcccacaag
gccacgggagcgctaattctcatagaccaatagcttcagaaaactcatca
aaccgaagaaaatgtgggaacactcacccagccagatttccactatcaaa
tgtttctgtaaaatatacttctcctataggttgaggtgtcttatacttaa
aagtctagaaaagagaatttttaaaagctaaagttatttatttttgccaa
tatctgacgtcgttctgccggttcagaacctagtacacagtgcacacggg
cgacagagatagggagaggcatggactctgggtgcaaagttcatgtctta
gtcatagcacagtgaagcctgctgtgtcgtacaactgatgtgcaggaatg
aatgggtaaagtttgtcccacttgtcacctcaccaaacatatgagcaatc
ttgtcaatgtttttaaagtaggaacttgcaaggatccctgtagcaggttt
tctgccccagctgttggtactttaagcattgtgtgcaaatcccagactgg
cttcaaaaaaacacctttgcagaatttgaaatttaacaggggagcccaaa
attcacctgcaaacagacaataacatttatatgcatataaaattcagtaa
atatgagaatgaagcaagggatttggaaacttctaagattctctgggctt
taacaaggcggcaacaggatggatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_85872134_85872503
seq2: B6Ng01-130B06.b_52_421

seq1  TCGCAGGAAATTACCCTAAGATGATAATGTCTGGTCATGGCCAGGCAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGGAAATTACCCTAAGATGATAATGTCTGGTCATGGCCAGGCAGCG  50

seq1  CAGGGCTGACCCACAGTTTTTCACAGCCTTGCCAAAGGATTGTAAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGACCCACAGTTTTTCACAGCCTTGCCAAAGGATTGTAAAGTGT  100

seq1  GGTCAAGAGGGGACCACGATGTGCCTGGGAGAAAGTGTTGGGGACCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGAGGGGACCACGATGTGCCTGGGAGAAAGTGTTGGGGACCTGAG  150

seq1  GACCGTAGCAACGGCCCCTTGGGAGGGCGAGCAAGCACGCGGGGTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTAGCAACGGCCCCTTGGGAGGGCGAGCAAGCACGCGGGGTCAAGG  200

seq1  ACGCAGGCTCAGTGCCTGTGCAGCCTGGTGTTGGCAGTGACGCTGCCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGGCTCAGTGCCTGTGCAGCCTGGTGTTGGCAGTGACGCTGCCACG  250

seq1  ATGAAGGCCAAGAACGTTAACTTGCTCTTCGCCTTCGTTGCCGTCCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCCAAGAACGTTAACTTGCTCTTCGCCTTCGTTGCCGTCCTGCT  300

seq1  CTTTGGTTTCTCGTGTTTCTGCATCTCCAGGATGAACCAAACCAGTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTTCTCGTGTTTCTGCATCTCCAGGATGAACCAAACCAGTAAGC  350

seq1  GGGGGTGGGGGGGGCGGGGG  370
      ||||||||||||||||||||
seq2  GGGGGTGGGGGGGGCGGGGG  370

seq1: chr8_85920360_85921354
seq2: B6Ng01-130B06.g_68_1045 (reverse)

seq1  AATCATCCATCCTGTTGTGCCGGCCTCTGTTTAAAGGGCCCAGAGAATTC  50
      |||||||||||||||||   | |||| |||| ||   |||||||||| ||
seq2  AATCATCCATCCTGTTG---CCGCCT-TGTTAAA---GCCCAGAGAA-TC  42

seq1  ATAGGAAGTTCTCACAAATCCCTTTGCTTCA-TCTCATATTTACTGGAAT  99
       || |||||| || |||||||| |||||||| ||||||||||||| ||||
seq2  TTA-GAAGTT-TC-CAAATCCC-TTGCTTCATTCTCATATTTACT-GAAT  87

seq1  TTTAATATGCAAATATAAATGTTATTGTCTGTTTGCA-GTGAATATTGTG  148
      ||| ||||||  ||||||||||||||||||||||||| |||||| ||| |
seq2  TTT-ATATGC--ATATAAATGTTATTGTCTGTTTGCAGGTGAATTTTGGG  134

seq1  CTTCCCCTGTTAAATTTCAATTTCTGCAAAGGTGTTCTTTTGAAGCCAGT  198
      | |||||||||||||||||| ||||||||||||||| |||||||||||| 
seq2  C-TCCCCTGTTAAATTTCAAATTCTGCAAAGGTGTTTTTTTGAAGCCAG-  182

seq1  TCTGGGATTTGCAACACAATGCTTAAAGTACCAACAGCTGGGGCAGATAT  248
      |||||||||||| |||||||||||||||||||||||||||||||||| | 
seq2  TCTGGGATTTGC-ACACAATGCTTAAAGTACCAACAGCTGGGGCAGAAAA  231

seq1  CCTGCTACAGGGATCCTTGCAAGTTCCTACTTTAAAAACATTGACAAGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACAGGGATCCTTGCAAGTTCCTACTTTAAAAACATTGACAAGAT  281

seq1  TGCTCATATGTTTGGTGAGGTGACAAGTGGGACAAACTTTACCCATTCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATGTTTGGTGAGGTGACAAGTGGGACAAACTTTACCCATTCAT  331

seq1  TCCTGCACATCAGTTGTACGACACAGCAGGCTTCACTGTGCTATGACTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACATCAGTTGTACGACACAGCAGGCTTCACTGTGCTATGACTAA  381

seq1  GACATGAACTTTGCACCCAGAGTCCATGCCTCTCCCTATCTCTGTCGCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAACTTTGCACCCAGAGTCCATGCCTCTCCCTATCTCTGTCGCCC  431

seq1  GTGTGCACTGTGTACTAGGTTCTGAACCGGCAGAACGACGTCAGATATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACTGTGTACTAGGTTCTGAACCGGCAGAACGACGTCAGATATTG  481

seq1  GCAAAAATAAATAACTTTAGCTTTTAAAAATTCTCTTTTCTAGACTTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATAAATAACTTTAGCTTTTAAAAATTCTCTTTTCTAGACTTTTA  531

seq1  AGTATAAGACACCTCAACCTATAGGAGAAGTATATTTTACAGAAACATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGACACCTCAACCTATAGGAGAAGTATATTTTACAGAAACATTT  581

seq1  GATAGTGGAAATCTGGCTGGGTGAGTGTTCCCACATTTTCTTCGGTTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGAAATCTGGCTGGGTGAGTGTTCCCACATTTTCTTCGGTTTGA  631

seq1  TGAGTTTTCTGAAGCTATTGGTCTATGAGAATTAGCGCTCCCGTGGCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTCTGAAGCTATTGGTCTATGAGAATTAGCGCTCCCGTGGCCTT  681

seq1  GTGGGATAATTTAAAGCTATGTATTTATACAAAGAGACACAAATTTGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATAATTTAAAGCTATGTATTTATACAAAGAGACACAAATTTGGAA  731

seq1  TGCACACAGCATTTGCTTATTCTCTAAGGTAGAGATTAACAGGGGCAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAGCATTTGCTTATTCTCTAAGGTAGAGATTAACAGGGGCAATT  781

seq1  GACTAGACAGCTCTGAGTTTCTGTTGCAGCCACAGAGATGGTATGCACCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGACAGCTCTGAGTTTCTGTTGCAGCCACAGAGATGGTATGCACCT  831

seq1  CTGTGAGGGATAATAACTACTGGTTACTGTGCCCCACTCCCCTGCTGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGGATAATAACTACTGGTTACTGTGCCCCACTCCCCTGCTGGGA  881

seq1  GCCAGATGTGTGCTCCATCCCAGTTCCCACTGAGACCACAGCTGTGGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGTGTGCTCCATCCCAGTTCCCACTGAGACCACAGCTGTGGTGT  931

seq1  GCATACTTACTCCCGCAGACACCAGCAAAGCCGAGCAGACTGAATTC  995
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTACTCCCGCAGACACCAGCAAAGCCGAGCAGACTGAATTC  978