BAC Information

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BAC

Clone NameB6Ng01-130K13
Chromosome8 (Build37)
Map Location 30,473,934 - 30,569,536
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666446, LOC100042598, Unc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130K13.bB6Ng01-130K13.g
ACCDH931918DH931919
length1,115966
definitionDH931918|Mus musculus domesticus DNA, BAC clone: B6Ng01-130K13, 5' end.DH931919|Mus musculus domesticus DNA, BAC clone: B6Ng01-130K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,568,415 - 30,569,536)(30,473,934 - 30,474,904)
sequence
gaattcttcctctctcacaatgtcttggattgcttgagcccagaaccaag
atatctatcaataacagtggtgaaagaaggccaagcctgccaatcctttt
tggattaatttccttaatgaatcagacttcctgcaagttctttcacttta
acactcttttgagactatgaaagcaaaagaggaaaagcttggaagcaaga
cactgtttctcctttctctgtaagtagagtaattaagtggtacagttagt
cacatggcattgagagcatgttttccagaatgttgtaatcatgactgacc
aaagcagagaagttgcatgctggatactagggtgactgattgcatcttgt
cacttttcaaaccactgaaacatctgtcccagtagctcctgcttgccctc
ctctagttgggattgaactatgtacctcataattaaagagtgtccctttt
ttcaagcccgaaacatttgtcacttttagggaatcaaactcctgagtctg
tggatcagaaataagcctctggtctcttactgacaatcctgcatttcagt
taagtaatttcccaaagcagctgggatttagtcagtgttcttagttataa
ttaaatgataaatcttcatgtggaaggcatccaacaccaagtatgtcagt
tgcactgaagcagaatagggcacaagatccatttacctaggaaaatgatt
tcacattggaaaactatattctcctgtcagtagccagctgtaagactttc
ccaaacaacagtcaatgaataaaatggcaaagctttttagtagcttatca
tgcatcttcacatgccaaatccatgcatttctctagatatgataagtgtt
tatatctatgtctggcatttcttactgacttcactgactccagtgtccaa
gtaggctgagccctcaacactcatttaggagagcttcccactctactcag
gagaaggatacatccttgttatgtcacccaaggtattctcccagtcatgg
ctaacacttctgatggtaccaataagttattaaaaatctagaatgaaata
tctatgtggggaataccacagtgactgtggacttttcattcattggtctc
attgggctgaagtca
gaattcacttggtatcaaccacacttgatggttgtttcattgttaagaac
tttattggatattaacttttaataaacactaacaaaacatgtcatctatt
attcattttaaggcaaatatttatacaacatctaccctgctagattctaa
gatgcagagctatgatcaaatataatcctggattttatttggtcaaaaga
gagacatatatttacatcaaccattaatttattatttaattttaagttta
ctaactcagtgtgatcagcacctgaaacaaaaatttcttacaatctgtgt
gttgtttccatactcctattcctggaggctcaaaacaaacattttcatgc
ttcatgtatgatatagttcttggaacctcaggtagtaacagttggttgtt
gctacaaatcttgacagcatgtgctcctggtaaggtctcacttcttcatg
acatctacttaaccaaaattaaccttaaattccaaatttatcttaatgtc
atgaagatacccatgaatcatattttttcctctagctgaaaaattctccc
tgggacagtccctcccacctcttaaaatatacaataatttgggtgtaaag
catcagcttccttgtgtttacttctacaagccagccaatctatacatttt
aagtgatggaaacttatgatccccctttatatttaaattgtattattttg
accttctagacactcatatgaagtatctctctccctccatccctccctcc
ttacctgccttcctttatttcccttctttcctttcttttcctccgctccc
tccctccctccctccctcccttccttcctttttccttcttctcttctttt
tcctacctttcatcctggctaagtctcgttttctattactggtggatgaa
accccttgaacaaaaacaacttgggggagaaaatggatttttagtcttac
tttcccacactactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_30568415_30569536
seq2: B6Ng01-130K13.b_44_1158 (reverse)

seq1  TGACATTCAGCACCCAATGAGACACATGAATGAAAAAGTCACAGTCACTG  50
      |||| |||||  |||||||||||  |||||||||||   |||||||||||
seq2  TGAC-TTCAG--CCCAATGAGACCAATGAATGAAAAGTCCACAGTCACTG  47

seq1  TTGTAATTCCCACATTAGATATCTCATTCTAGATATTTAATAAACTATTG  100
      | ||| | |||||| ||||||| ||||||||||| ||||||||  |||||
seq2  TGGTATTCCCCACA-TAGATATTTCATTCTAGATTTTTAATAACTTATTG  96

seq1  GTACCATCAGAAGTGTTAGCCATGACTGGGAGAATACCTTGGGTGACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATCAGAAGTGTTAGCCATGACTGGGAGAATACCTTGGGTGACATA  146

seq1  ACAAGGATGTTATCCTTCTCCTGAGTAGAGTGGGAAGGCTCTTCCTAAAT  200
      ||||||||| |||||||||||||||||||||||||| |||| ||||||||
seq2  ACAAGGATG-TATCCTTCTCCTGAGTAGAGTGGGAA-GCTC-TCCTAAAT  193

seq1  GAGTGTTGAGGGCTCAGCCTACTTGGACACTGGAGTCAGTGAAGTCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGAGGGCTCAGCCTACTTGGACACTGGAGTCAGTGAAGTCAGTA  243

seq1  AGAAATGCCAGACATAGATATAAACACTTATCATATCTAGAGAAATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCCAGACATAGATATAAACACTTATCATATCTAGAGAAATGCAT  293

seq1  GGATTTGGCATGTGAAGATGCATGATAAGCTACTAAAAAGCTTTGCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGCATGTGAAGATGCATGATAAGCTACTAAAAAGCTTTGCCATT  343

seq1  TTATTCATTGACTGTTGTTTGGGAAAGTCTTACAGCTGGCTACTGACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTGACTGTTGTTTGGGAAAGTCTTACAGCTGGCTACTGACAGG  393

seq1  AGAATATAGTTTTCCAATGTGAAATCATTTTCCTAGGTAAATGGATCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAGTTTTCCAATGTGAAATCATTTTCCTAGGTAAATGGATCTTG  443

seq1  TGCCCTATTCTGCTTCAGTGCAACTGACATACTTGGTGTTGGATGCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTATTCTGCTTCAGTGCAACTGACATACTTGGTGTTGGATGCCTTC  493

seq1  CACATGAAGATTTATCATTTAATTATAACTAAGAACACTGACTAAATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGATTTATCATTTAATTATAACTAAGAACACTGACTAAATCCC  543

seq1  AGCTGCTTTGGGAAATTACTTAACTGAAATGCAGGATTGTCAGTAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTTGGGAAATTACTTAACTGAAATGCAGGATTGTCAGTAAGAGA  593

seq1  CCAGAGGCTTATTTCTGATCCACAGACTCAGGAGTTTGATTCCCTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCTTATTTCTGATCCACAGACTCAGGAGTTTGATTCCCTAAAAG  643

seq1  TGACAAATGTTTCGGGCTTGAAAAAAGGGACACTCTTTAATTATGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGTTTCGGGCTTGAAAAAAGGGACACTCTTTAATTATGAGGTA  693

seq1  CATAGTTCAATCCCAACTAGAGGAGGGCAAGCAGGAGCTACTGGGACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCAATCCCAACTAGAGGAGGGCAAGCAGGAGCTACTGGGACAGA  743

seq1  TGTTTCAGTGGTTTGAAAAGTGACAAGATGCAATCAGTCACCCTAGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGTGGTTTGAAAAGTGACAAGATGCAATCAGTCACCCTAGTATC  793

seq1  CAGCATGCAACTTCTCTGCTTTGGTCAGTCATGATTACAACATTCTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCAACTTCTCTGCTTTGGTCAGTCATGATTACAACATTCTGGAA  843

seq1  AACATGCTCTCAATGCCATGTGACTAACTGTACCACTTAATTACTCTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTCTCAATGCCATGTGACTAACTGTACCACTTAATTACTCTACT  893

seq1  TACAGAGAAAGGAGAAACAGTGTCTTGCTTCCAAGCTTTTCCTCTTTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAAGGAGAAACAGTGTCTTGCTTCCAAGCTTTTCCTCTTTTGC  943

seq1  TTTCATAGTCTCAAAAGAGTGTTAAAGTGAAAGAACTTGCAGGAAGTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGTCTCAAAAGAGTGTTAAAGTGAAAGAACTTGCAGGAAGTCTG  993

seq1  ATTCATTAAGGAAATTAATCCAAAAAGGATTGGCAGGCTTGGCCTTCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAAGGAAATTAATCCAAAAAGGATTGGCAGGCTTGGCCTTCTTT  1043

seq1  CACCACTGTTATTGATAGATATCTTGGTTCTGGGCTCAAGCAATCCAAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGTTATTGATAGATATCTTGGTTCTGGGCTCAAGCAATCCAAGA  1093

seq1  CATTGTGAGAGAGGAAGAATTC  1122
      ||||||||||||||||||||||
seq2  CATTGTGAGAGAGGAAGAATTC  1115

seq1: chr8_30473934_30474904
seq2: B6Ng01-130K13.g_68_1033

seq1  GAATTCACTTGGTATCAACCACACTTGATGGTTGTTTCATTGTTAAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGTATCAACCACACTTGATGGTTGTTTCATTGTTAAGAAC  50

seq1  TTTATTGGATATTAACTTTTAATAAACACTAACAAAACATGTCATCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGATATTAACTTTTAATAAACACTAACAAAACATGTCATCTATT  100

seq1  ATTCATTTTAAGGCAAATATTTATACAACATCTACCCTGCTAGATTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTAAGGCAAATATTTATACAACATCTACCCTGCTAGATTCTAA  150

seq1  GATGCAGAGCTATGATCAAATATAATCCTGGATTTTATTTGGTCAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGCTATGATCAAATATAATCCTGGATTTTATTTGGTCAAAAGA  200

seq1  GAGACATATATTTACATCAACCATTAATTTATTATTTAATTTTAAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATATATTTACATCAACCATTAATTTATTATTTAATTTTAAGTTTA  250

seq1  CTAACTCAGTGTGATCAGCACCTGAAACAAAAATTTCTTACAATCTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAGTGTGATCAGCACCTGAAACAAAAATTTCTTACAATCTGTGT  300

seq1  GTTGTTTCCATACTCCTATTCCTGGAGGCTCAAAACAAACATTTTCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCCATACTCCTATTCCTGGAGGCTCAAAACAAACATTTTCATGC  350

seq1  TTCATGTATGATATAGTTCTTGGAACCTCAGGTAGTAACAGTTGGTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATGATATAGTTCTTGGAACCTCAGGTAGTAACAGTTGGTTGTT  400

seq1  GCTACAAATCTTGACAGCATGTGCTCCTGGTAAGGTCTCACTTCTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAATCTTGACAGCATGTGCTCCTGGTAAGGTCTCACTTCTTCATG  450

seq1  ACATCTACTTAACCAAAATTAACCTTAAATTCCAAATTTATCTTAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACTTAACCAAAATTAACCTTAAATTCCAAATTTATCTTAATGTC  500

seq1  ATGAAGATACCCATGAATCATATTTTTTCCTCTAGCTGAAAAATTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATACCCATGAATCATATTTTTTCCTCTAGCTGAAAAATTCTCCC  550

seq1  TGGGACAGTCCCTCCCACCTCTTAAAATATACAATAATTTGGGTGT-AAG  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGGACAGTCCCTCCCACCTCTTAAAATATACAATAATTTGGGTGTAAAG  600

seq1  CATCAGCTTCCTTGTGTTTACTTCTACAAGCCAGCCAATCTATACATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTTCCTTGTGTTTACTTCTACAAGCCAGCCAATCTATACATTTT  650

seq1  AAGTGATGGAAACTTATGATCCCCCTTTATATTTAAATTTGTATTATTTT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGTGATGGAAACTTATGATCCCCCTTTATATTTAAA-TTGTATTATTTT  699

seq1  GACCTTCTAGACACTCATATGAAGTATCTCTCTCCCTCCATCCCTCCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCTAGACACTCATATGAAGTATCTCTCTCCCTCCATCCCTCCCTC  749

seq1  CTTACCTGCCTTCCTTTTATTTTCCTTCTTTCCTTTCCTTTTCCTCCGCT  799
      |||||||||||||| ||||||| ||||||||||||| |||||||||||||
seq2  CTTACCTGCCTTCC-TTTATTTCCCTTCTTTCCTTT-CTTTTCCTCCGCT  797

seq1  CCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTTTCCTTTCTTCCTTCT  849
      |||||||||||||||||||||||||||||||||||||| ||||||  |||
seq2  CCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTTTCC-TTCTTC--TCT  844

seq1  TCCTTTTTCCTTCCTTTCCATCCTGTCTTAGTCACAGTTACTATTACTG-  898
      | ||||||||| ||||| ||||||| || |||| |  || ||||||||| 
seq2  T-CTTTTTCCTACCTTT-CATCCTGGCTAAGTCTCGTTTTCTATTACTGG  892

seq1  -TGATGAAACACCATGAACAAAAACAACTTGGGGGAGAAAATGGATTATT  947
        |||||||| || ||||||||||||||||||||||||||||||||| ||
seq2  TGGATGAAACCCCTTGAACAAAAACAACTTGGGGGAGAAAATGGATT-TT  941

seq1  TAG-CTTACATTCCCACACTACTGT  971
      ||| ||||| |||||||||||||||
seq2  TAGTCTTACTTTCCCACACTACTGT  966