BAC Information

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BAC

Clone NameB6Ng01-131N24
Chromosome8 (Build37)
Map Location 125,804,995 - 125,927,265
singlet/doubletdoublet
Overlap geneFanca, Spire2, Tcf25
Upstream geneZfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276
Downstream geneMc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131N24.bB6Ng01-131N24.g
ACCDH932822DH932823
length1,1521,167
definitionDH932822|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N24, 5' end.DH932823|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,926,108 - 125,927,265)(125,804,995 - 125,806,159)
sequence
gaattcagttgcaaggctgagcaacacttctgaagccgatcatctgatgg
cctctcaggaaacaggcctgcaggtgggacgttcctgaaggcctggggta
tcctctgcttcactgttcctagagcatggctcttcattttggaattcgtt
gtcacgtggttgcagaatagctgctgcagctccagatgtcacatcctcat
ccggatggacttacagctgctgaaaggaagaggcaggatgccaggttttc
cgcgcttgcttgtcatttccacaacatacatccattcctaggcagtcctt
cctccccttggctgaaactcaccacaggccattccaacttggaaactcac
attgaatgaggcccatctcagcagtaaccctccccaggactgggtgtaga
tcatcccaccaaacccagggataggtgaggcaactggtgggagccatgcc
cttaggcctgccctccccaggcccctcaggcctgccctcccaggcccctg
ctgacccacgagcagaagttgtagagcctgtatccagacttcatggcctt
gccaattcatgctggagaaaaaaagacattcagcaccaattcatgtgacc
tgtgacctcttaccaggcatgtacgttgaacacggagtccctcctgtaaa
tggcccccttaggaatgggctatgacattaggctgatagatggaaacaag
tcagccctcaatattctgctgaaggggcagtgctctgggcccctgctcag
tcacatccagggccccttgccccagagcacctattaagagacctccttaa
gtgtacactggagctggaatcatgggtagttgtgagtcaccctccatgtg
tgctttaagttcacagcctgggcctctgcacagtgctttaaccccaaact
gtcccttttcatttcctggtgtaattctgtaggtgtgcacctggcagtgt
attgtgtggaggtcagaggacagctacagagcgagctctcactgtgcagc
acatgagtcctggggactgaatcaggccatcgggcctgcagcagttacgg
ttaaatcagaatggctcaagtcctaaagcgtgttttatggtgtactcacc
attctatccagtctggaaaccgtagacctccaaggaaggcattaatggac
ca
gaattccacacagaagacgacactgagtttctttgagttgtgctgacccg
tgctgtcactagcagagagcaggaggtttgaggactgtgtggctgacctt
tggtggaagtccatgatctcgctgacaaggactgtgcacgcctcttccag
gtctccaccacagccgcccaaagccgtcggagctggcaagtagcgctcat
agattgcccattgatggaagtcatgtctgcaatggtggaaggccgaggtc
aacactgagcaacactttgtaaccatcctgaagtggtctctctcagaaga
acacagtgccagtgactgggcagtgggagctagccccagcagcctgagag
ctcacaggtgagtgaggatccattgtctgcaagacaggggacagagctgt
ggccaagccgtctttcctatgcaccagggaagggcctcaaggacatggtg
actgttttaagtggaaacagccaaacacaagtgaggtagctcacaccaca
aagaccaggcgaggttcacggagaggcactttgtccatgtgggctgatat
ctcaagcattaggagtgtgactaaagcagggaggatggctgggaatggag
ccatctgtggggagcttccctagcatggaaaaagccttcgcttccagcaa
aaagaggggtgggcggggaacccctaaaacacttcttaaaaaaaaagtct
aaatacgatctcaagataacagtgacccaaggggttaaaactttgagcct
gagcctggtgaggcggctcagcttttaagagctctggctgctttggcaaa
ggacctaggttcacatcccagcactgatgtggcagctgcatctgtctgca
actttagttccaaaatatctaccaccttcttctgacccctgcaggtcact
cacgcgttgcgcacacacacacacacacccatacatatcaattaaaagta
aatatttttttaaagcgaagttatgaggcctttaacacagcatcctgtcc
cgatgcacctcagttctagtgcctacctaagtaactcctaagggagcctg
cccaccctatatacccccaatacctctatcagaacagccaagtgtcacct
ggttctacaggcctatttataagcctcagacacctcattgtgtctacacg
tgtggttttacaagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_125926108_125927265
seq2: B6Ng01-131N24.b_48_1199 (reverse)

seq1  TGGTCCATTGATGCCTTCCTGGGA-GTCTACGTGTTTCAGACTGGAT-GA  48
      ||||||||| |||||||||| ||| |||||||  || |||||||||| ||
seq2  TGGTCCATTAATGCCTTCCTTGGAGGTCTACGGTTTCCAGACTGGATAGA  50

seq1  TTGGGTTTGGAGTACA-CATAAAACACGCTTTAGGAC-TGAGCCATTCTG  96
       |||     ||||||| |||||||||||||||||||| ||||||||||||
seq2  ATGG----TGAGTACACCATAAAACACGCTTTAGGACTTGAGCCATTCTG  96

seq1  ATGTAACGGTACTGGCTGGCAGGCCCGATGGCCTGAATTCAGTCCCCAGG  146
      || |||| |||   ||| ||||||||||||||||| ||||||||||||||
seq2  ATTTAACCGTAACTGCT-GCAGGCCCGATGGCCTG-ATTCAGTCCCCAGG  144

seq1  ACTCATGTGCTGCACAGTGAGAGCTCGCTCCTGTAGCTTGTCCTCTGACC  196
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  ACTCATGTGCTGCACAGTGAGAGCTCGCT-CTGTAGC-TGTCCTCTGACC  192

seq1  TCCACACAATACACTGCCAGGTGCACACCTACAGAATTACACCCAGGAAA  246
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCACACAATACACTGCCAGGTGCACACCTACAGAATTACA-CCAGGAAA  241

seq1  TGGAAAAGGGACAGTTTGGGGTTAAAGCACTGTGCAGAGGCCCAGGCTGT  296
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GAAAAGGGACAGTTTGGGGTTAAAGCACTGTGCAGAGGCCCAGGCTGT  290

seq1  GAACTTAAAGCACACATGGAGGGTGACTCACAACTACCCATGATTCCAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAAAGCACACATGGAGGGTGACTCACAACTACCCATGATTCCAGC  340

seq1  TCCAGTGTACACTTAAGGAGGTCTCTTAATAGGTGCTCTGGGGCAAGGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTACACTTAAGGAGGTCTCTTAATAGGTGCTCTGGGGCAAGGGG  390

seq1  CCCTGGATGTGACTGAGCAGGGGCCCAGAGCACTGCCCCTTCAGCAGAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGTGACTGAGCAGGGGCCCAGAGCACTGCCCCTTCAGCAGAAT  440

seq1  ATTGAGGGCTGACTTGTTTCCATCTATCAGCCTAATGTCATAGCCCATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGCTGACTTGTTTCCATCTATCAGCCTAATGTCATAGCCCATTC  490

seq1  CTAAGGGGGCCATTTACAGGAGGGACTCCGTGTTCAACGTACATGCCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGGGCCATTTACAGGAGGGACTCCGTGTTCAACGTACATGCCTGG  540

seq1  TAAGAGGTCACAGGTCACATGAATTGGTGCTGAATGTCTTTTTTTCTCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTCACAGGTCACATGAATTGGTGCTGAATGTCTTTTTTTCTCCA  590

seq1  GCATGAATTGGCAAGGCCATGAAGTCTGGATACAGGCTCTACAACTTCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAATTGGCAAGGCCATGAAGTCTGGATACAGGCTCTACAACTTCTG  640

seq1  CTCGTGGGTCAGCAGGGGCCTGGGAGGGCAGGCCTGAGGGGCCTGGGGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGGGTCAGCAGGGGCCTGGGAGGGCAGGCCTGAGGGGCCTGGGGAG  690

seq1  GGCAGGCCTAAGGGCATGGCTCCCACCAGTTGCCTCACCTATCCCTGGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCCTAAGGGCATGGCTCCCACCAGTTGCCTCACCTATCCCTGGGT  740

seq1  TTGGTGGGATGATCTACACCCAGTCCTGGGGAGGGTTACTGCTGAGATGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGATGATCTACACCCAGTCCTGGGGAGGGTTACTGCTGAGATGG  790

seq1  GCCTCATTCAATGTGAGTTTCCAAGTTGGAATGGCCTGTGGTGAGTTTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTCAATGTGAGTTTCCAAGTTGGAATGGCCTGTGGTGAGTTTCA  840

seq1  GCCAAGGGGAGGAAGGACTGCCTAGGAATGGATGTATGTTGTGGAAATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGGGAGGAAGGACTGCCTAGGAATGGATGTATGTTGTGGAAATGA  890

seq1  CAAGCAAGCGCGGAAAACCTGGCATCCTGCCTCTTCCTTTCAGCAGCTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCGCGGAAAACCTGGCATCCTGCCTCTTCCTTTCAGCAGCTGT  940

seq1  AAGTCCATCCGGATGAGGATGTGACATCTGGAGCTGCAGCAGCTATTCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATCCGGATGAGGATGTGACATCTGGAGCTGCAGCAGCTATTCTG  990

seq1  CAACCACGTGACAACGAATTCCAAAATGAAGAGCCATGCTCTAGGAACAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACGTGACAACGAATTCCAAAATGAAGAGCCATGCTCTAGGAACAG  1040

seq1  TGAAGCAGAGGATACCCCAGGCCTTCAGGAACGTCCCACCTGCAGGCCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGAGGATACCCCAGGCCTTCAGGAACGTCCCACCTGCAGGCCTG  1090

seq1  TTTCCTGAGAGGCCATCAGATGATCGGCTTCAGAAGTGTTGCTCAGCCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGAGGCCATCAGATGATCGGCTTCAGAAGTGTTGCTCAGCCTT  1140

seq1  GCAACTGAATTC  1158
      ||||||||||||
seq2  GCAACTGAATTC  1152

seq1: chr8_125804995_125806159
seq2: B6Ng01-131N24.g_68_1234

seq1  GAATTCCACACAGAAGACGACACTGAGTTTCTTTGAGTTGTGCTGACCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAGAAGACGACACTGAGTTTCTTTGAGTTGTGCTGACCCG  50

seq1  TGCTGTCACTAGCAGAGAGCAGGAGGTTTGAGGACTGTGTGGCTGACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCACTAGCAGAGAGCAGGAGGTTTGAGGACTGTGTGGCTGACCTT  100

seq1  TGGTGGAAGTCCATGATCTCGCTGACAAGGACTGTGCACGCCTCTTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAGTCCATGATCTCGCTGACAAGGACTGTGCACGCCTCTTCCAG  150

seq1  GTCTCCACCACAGCCGCCCAAAGCCGTCGGAGCTGGCAAGTAGCGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACCACAGCCGCCCAAAGCCGTCGGAGCTGGCAAGTAGCGCTCAT  200

seq1  AGATTGCCCATTGATGGAAGTCATGTCTGCAATGGTGGAAGGCCGAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCCATTGATGGAAGTCATGTCTGCAATGGTGGAAGGCCGAGGTC  250

seq1  AACACTGAGCAACACTTTGTAACCATCCTGAAGTGGTCTCTCTCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAGCAACACTTTGTAACCATCCTGAAGTGGTCTCTCTCAGAAGA  300

seq1  ACACAGTGCCAGTGACTGGGCAGTGGGAGCTAGCCCCAGCAGCCTGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGCCAGTGACTGGGCAGTGGGAGCTAGCCCCAGCAGCCTGAGAG  350

seq1  CTCACAGGTGAGTGAGGATCCATTGTCTGCAAGACAGGGGACAGAGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGTGAGTGAGGATCCATTGTCTGCAAGACAGGGGACAGAGCTGT  400

seq1  GGCCAAGCCGTCTTTCCTATGCACCAGGGAAGGGCCTCAAGGACATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCCGTCTTTCCTATGCACCAGGGAAGGGCCTCAAGGACATGGTG  450

seq1  ACTGTTTTAAGTGGAAACAGCCAAACACAAGTGAGGTAGCTCACACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTAAGTGGAAACAGCCAAACACAAGTGAGGTAGCTCACACCACA  500

seq1  AAGACCAGGCGAGGTTCACGGAGAGGCACTTTGTCCATGTGGGCTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGGCGAGGTTCACGGAGAGGCACTTTGTCCATGTGGGCTGATAT  550

seq1  CTCAAGCATTAGGAGTGTGACTAAAGCAGGGAGGATGGCTGGGAATGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCATTAGGAGTGTGACTAAAGCAGGGAGGATGGCTGGGAATGGAG  600

seq1  CCATCTGTGGGGAGCTTCCCTAGCATGGAAAAAGCCTTCGCTTCCAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTGGGGAGCTTCCCTAGCATGGAAAAAGCCTTCGCTTCCAGCAA  650

seq1  AAAGAGGGGTGGGCGGGGAACCCCTAAAACACTTCTTAAAAAAAAAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGGTGGGCGGGGAACCCCTAAAACACTTCTTAAAAAAAAAGTCT  700

seq1  AAATACGATCTCAAGATAACAGTGACCCAAGGGGTTAAAAC-TTGAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAATACGATCTCAAGATAACAGTGACCCAAGGGGTTAAAACTTTGAGCCT  750

seq1  GAGCCTGGTGAGGCGGCTCAGCTTTTAAGAGCTCTGGCTGCTTTGGCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGTGAGGCGGCTCAGCTTTTAAGAGCTCTGGCTGCTTTGGCAAA  800

seq1  GGACCTAGGTTCACATCCCAGCACTGATGTGGCAGCTGCATCTGTCTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAGGTTCACATCCCAGCACTGATGTGGCAGCTGCATCTGTCTGCA  850

seq1  ACTTTAGTTCCAAAATATCTACCACCTTCTTCTGACCCCTGCAGGTCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTTCCAAAATATCTACCACCTTCTTCTGACCCCTGCAGGTCACT  900

seq1  CACGCG-TGCGCACACACACACACACACCCATACATATCAAATAAAAGTA  948
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  CACGCGTTGCGCACACACACACACACACCCATACATATCAATTAAAAGTA  950

seq1  AATAATTTTTTAAAGCGAAGTTATGAGGCCTTTAACAACAGCATCCTGTC  998
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATATTTTTTTAAAGCGAAGTTATGAGGCCTTTAAC-ACAGCATCCTGTC  999

seq1  ACGATGCA-CTCAGTTTCTAGTGCCTACCTCAAGTAACTCCTA--GGAGC  1045
       ||||||| ||||| ||||||||||||||| ||||||||||||  |||||
seq2  CCGATGCACCTCAG-TTCTAGTGCCTACCT-AAGTAACTCCTAAGGGAGC  1047

seq1  CTGCCCACCC-ATATACCCCCATTACCTCAATCAG-ACAGCCCAAGTGGT  1093
      |||||||||| ||||||||||| |||||| ||||| |||| |||||| ||
seq2  CTGCCCACCCTATATACCCCCAATACCTCTATCAGAACAG-CCAAGT-GT  1095

seq1  CACTTGTTCTTACAGGGCCTATTTTATAGCCTCAGACCACTCATTGTGTC  1143
      ||| || |  |||| |||||||||   ||||||||||  |||||||||||
seq2  CACCTGGTTCTACA-GGCCTATTTATAAGCCTCAGACACCTCATTGTGTC  1144

seq1  TAC---TGTGGTTTTACCAAAGTGC  1165
      |||   |||||||||||  ||||||
seq2  TACACGTGTGGTTTTAC--AAGTGC  1167