BAC Information

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BAC

Clone NameB6Ng01-133P13
Chromosome8 (Build37)
Map Location 11,070,480 - 11,218,342
singlet/doubletdoublet
Overlap geneCol4a1
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
Downstream geneCol4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133P13.bB6Ng01-133P13.g
ACCDH934385DH934386
length9851,070
definitionDH934385|Mus musculus domesticus DNA, BAC clone: B6Ng01-133P13, 5' end.DH934386|Mus musculus domesticus DNA, BAC clone: B6Ng01-133P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,070,480 - 11,071,472)(11,217,270 - 11,218,342)
sequence
gaattcatcctgtaccagaattcactgtggagatacagtagctgacaaaa
aatggccttctctgagaaagatgtttttaatggaatgaaacttataccat
gctggggttgggaaaggccccaaaagaacccccttgcaggcaggaggagg
gctaataaaaggcctggcttggctgaacctcacctgtgagcagcaaccag
gcaaacaggatggagtagaggaggaaggcatgtgggtgtcagccctgctc
aaaagaagagcagagttgccttcagggatcataacaaaaagggccttttc
ctaggatatgtgagaacgttgtgtttggtcttgttttgttctatataggg
agatacttagctcaatcagtgtttggacacaagtgaatagacagaacttt
cctgtgttactccagagagaagacaatgtgggcaagatactgggagagca
gatgctggacacatcacatgtgggagactgaatgctaggtacagaggatg
ctggggatgaaggatgctgggtacagaggatgctgggggctgaggatcct
ggagacggatgaaggatgctggggatggagaatgctagggccagtaagtg
ttcattttgataatgtttttctaagtgcttcctggtgatgagaacttcat
ggtgaaggcacatggctagagagaatggacaggatttaaggaagaacaac
acagagttcgcagagatgaaggaactgatatccattgcattgtgggagat
ttgtttgtcctctagaagtcccagatattatgaagttgaagaggagtaga
aaccccagagagggctgtagcgccctctgtctgctcctgtggaggagatg
gctgtgagcagttacagtcacattgaagtctgcagagtaactcccacctg
agcctccccaaagctctgccccctgggtactatgtacaaaacctgcccct
gggttactatgttacagacctgggcttacagagtt
gaattccaatgacttgctatgacagtctaggctgctggtggtatacctgt
gtctgtgtgtcataggtccatatatggcgtgtgaatcttcacactgcctc
acagtcctcggaactgatggttccgcatcggcagagctgtgttctcccta
tacagtgatggtctttcaaaggcagggggaagcttagcttgcctgaggac
ccctggctgtgttggtggcagactgataagcagagcgatttgtgttgagc
gtcagccattaagtccaagttctattgtctgtgtcactaggttcgcctgg
agaaaaaggtgtgcctggcatccctggctcacagggtgtccctggctcac
ctggagagaagggagccaaaggagagaaagggcagtcaggtctacctggc
attgggattccgggacggcctggtgacaaggtgatcatctcctgccccgt
gacaatgtccctgacacttaccaactatctcagcacaactatgatacagc
tctccctctgactaactctgtcatgtcctcctgttcactgccttttctcc
caagggcaaactctagaatctctctgagagggtgagggtggccgcatatc
acagggaggaagaagaggggcgggctggggagcttggcagatggagagaa
tgtcttttctggaaagcccagcaaatgggattctccagtgtgattgatac
tcacggcctctcttacctagaaatctgctacctagaaagtgcttccagac
ctgtaggtgacacgtctgcttcttcctcacagggagaccagggccttgct
ggcttcccaggcagccccggtgagaagggagagaaaggcagtgccggaac
cccagggatgccagggtccccaggcccgagaggttctccggggaacatcg
gccatccaggtatgggggctgggcaagctctggcagaaggtacaggtgaa
gaaaactagctgcatacaacttctgactttcatttcctctttaggaagcc
caggcctgcctggagaagaaagggataaaggccttccaggactggatggc
gttcttgtgttcaaaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11070480_11071472
seq2: B6Ng01-133P13.b_49_1033

seq1  GAATTCATCCTGTACCAGAATTCACTGTGGAGATACAGTAGCTGACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTGTACCAGAATTCACTGTGGAGATACAGTAGCTGACAAAA  50

seq1  AATGGCCTTCTCTGAGAAAGATGTTTTTAATGGAATGAAACTTATACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTTCTCTGAGAAAGATGTTTTTAATGGAATGAAACTTATACCAT  100

seq1  GCTGGGGTTGGGAAAGGCCCCAAAAGAACCCCCTTGCAGGCAGGAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTTGGGAAAGGCCCCAAAAGAACCCCCTTGCAGGCAGGAGGAGG  150

seq1  GCTAATAAAAGGCCTGGCTTGGCTGAACCTCACCTGTGAGCAGCAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAAAAGGCCTGGCTTGGCTGAACCTCACCTGTGAGCAGCAACCAG  200

seq1  GCAAACAGGATGGAGTAGAGGAGGAAGGCATGTGGGTGTCAGCCCTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGGATGGAGTAGAGGAGGAAGGCATGTGGGTGTCAGCCCTGCTC  250

seq1  AAAAGAAGAGCAGAGTTGCCTTCAGGGATCATAACAAAAAGGGCCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAGCAGAGTTGCCTTCAGGGATCATAACAAAAAGGGCCTTTTC  300

seq1  CTAGGATATGTGAGAACGTTGTGTTTGGTCTTGTTTTGTTCTATATAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATATGTGAGAACGTTGTGTTTGGTCTTGTTTTGTTCTATATAGGG  350

seq1  AGATACTTAGCTCAATCAGTGTTTGGACACAAGTGAATAGACAGAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTAGCTCAATCAGTGTTTGGACACAAGTGAATAGACAGAACTTT  400

seq1  CCTGTGTTACTCCAGAGAGAAGACAATGTGGGCAAGATACTGGGAGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTACTCCAGAGAGAAGACAATGTGGGCAAGATACTGGGAGAGCA  450

seq1  GATGCTGGACACATCACATGTGGGAGACTGAATGCTAGGTACAGAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGACACATCACATGTGGGAGACTGAATGCTAGGTACAGAGGATG  500

seq1  CTGGGGATGAAGGATGCTGGGTACAGAGGATGCTGGGGGCTGAGGATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATGAAGGATGCTGGGTACAGAGGATGCTGGGGGCTGAGGATCCT  550

seq1  GGAGACGGATGAAGGATGCTGGGGATGGAGAATGCTAGGGCCAGTAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGGATGAAGGATGCTGGGGATGGAGAATGCTAGGGCCAGTAAGTG  600

seq1  TTCATTTTGATAATGTTTTTCTAAGTGCTTCCTGGTGATGAGAACTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGATAATGTTTTTCTAAGTGCTTCCTGGTGATGAGAACTTCAT  650

seq1  GGTGAAGGCACATGGCTAGAGAGAATGGACAGGATTTAAGGAAGAACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGCACATGGCTAGAGAGAATGGACAGGATTTAAGGAAGAACAAC  700

seq1  ACAGAGTTCGCAGAGATGAAGGAACTGATATCCATTGCATTGTGGGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTCGCAGAGATGAAGGAACTGATATCCATTGCATTGTGGGAGAT  750

seq1  TTGTTTGTCCTCTAGAAGTCCCAGATATTATGAAGTTGAAGAGGAGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTCCTCTAGAAGTCCCAGATATTATGAAGTTGAAGAGGAGTAGA  800

seq1  AACCCCAGAGAGGGCTGTAGCGCCCTCTGTCTGCTCCTGTGGAGGAGGAT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACCCCAGAGAGGGCTGTAGCGCCCTCTGTCTGCTCCTGTGGAGGA-GAT  849

seq1  GGCTGTGAGCAGTCACAGTCACCATGAAGTCTGCAGAGTAACTCCCACCT  900
      ||||||||||||| ||||||||  ||||||||||||||||||||||||||
seq2  GGCTGTGAGCAGTTACAGTCACATTGAAGTCTGCAGAGTAACTCCCACCT  899

seq1  GAGCCTTCCCCAAAGCCCTGCCCCCTGGGTTACTATGTTACAAAACCCTG  950
      ||||| |||||||||| |||||||||||| ||||||| ||||||| ||||
seq2  GAGCC-TCCCCAAAGCTCTGCCCCCTGGG-TACTATG-TACAAAA-CCTG  945

seq1  CCCCCTGGGTTACTATGTTACAGACACTGGGGCTTACAGAGTT  993
       |||||||||||||||||||||||| || ||||||||||||||
seq2  -CCCCTGGGTTACTATGTTACAGAC-CT-GGGCTTACAGAGTT  985

seq1: chr8_11217270_11218342
seq2: B6Ng01-133P13.g_67_1136 (reverse)

seq1  TCTCCTTTGACACCAGGAACGCCATCCAGTCCTGGGAGGCCTTTATCCCC  50
      ||||||||||   || ||||||||||||||||||| ||||||||||||| 
seq2  TCTCCTTTGAACACAAGAACGCCATCCAGTCCTGGAAGGCCTTTATCCCT  50

seq1  TTTCTCTCCAGGCAGGCCTGGGCTTCCTAAAGAGGAAATGAAAGTTCAGA  100
      ||  |||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTTCTCCAGGCAGGCCTGGGCTTCCTAAAGAGGAAATGAAAG-TCAGA  99

seq1  AGTTGTATGCAGCTAGGTTTTCTTCACCTGTACCTTTCTGCCAGAGCTTG  150
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  AGTTGTATGCAGCTA-GTTTTCTTCACCTGTACC-TTCTGCCAGAGCTTG  147

seq1  CCCAGCCCCCATACCTGGATGGCCGATGTTCCCCGGAGAACCTCTCGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCCATACCTGGATGGCCGATGTTCCCCGGAGAACCTCTCGGGC  197

seq1  CTGGGGACCCTGGCATCCCTGGGGTTCCGGCACTGCCTTTCTCTCCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACCCTGGCATCCCTGGGGTTCCGGCACTGCCTTTCTCTCCCTTC  247

seq1  TCACCGGGGCTGCCTGGGAAGCCAGCAAGGCCCTGGTCTCCCTGTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGGGGCTGCCTGGGAAGCCAGCAAGGCCCTGGTCTCCCTGTGAGGA  297

seq1  AGAAGCAGACGTGTCACCTACAGGTCTGGAAGCACTTTCTAGGTAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGACGTGTCACCTACAGGTCTGGAAGCACTTTCTAGGTAGCAGA  347

seq1  TTTCTAGGTAAGAGAGGCCGTGAGTATCAATCACACTGGAGAATCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGTAAGAGAGGCCGTGAGTATCAATCACACTGGAGAATCCCATT  397

seq1  TGCTGGGCTTTCCAGAAAAGACATTCTCTCCATCTGCCAAGCTCCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCTTTCCAGAAAAGACATTCTCTCCATCTGCCAAGCTCCCCAGC  447

seq1  CCGCCCCTCTTCTTCCTCCCTGTGATATGCGGCCACCCTCACCCTCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCTCTTCTTCCTCCCTGTGATATGCGGCCACCCTCACCCTCTCAG  497

seq1  AGAGATTCTAGAGTTTGCCCTTGGGAGAAAAGGCAGTGAACAGGAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTAGAGTTTGCCCTTGGGAGAAAAGGCAGTGAACAGGAGGACA  547

seq1  TGACAGAGTTAGTCAGAGGGAGAGCTGTATCATAGTTGTGCTGAGATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGTTAGTCAGAGGGAGAGCTGTATCATAGTTGTGCTGAGATAGT  597

seq1  TGGTAAGTGTCAGGGACATTGTCACGGGGCAGGAGATGATCACCTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTGTCAGGGACATTGTCACGGGGCAGGAGATGATCACCTTGTCA  647

seq1  CCAGGCCGTCCCGGAATCCCAATGCCAGGTAGACCTGACTGCCCTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCGTCCCGGAATCCCAATGCCAGGTAGACCTGACTGCCCTTTCTC  697

seq1  TCCTTTGGCTCCCTTCTCTCCAGGTGAGCCAGGGACACCCTGTGAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGCTCCCTTCTCTCCAGGTGAGCCAGGGACACCCTGTGAGCCAG  747

seq1  GGATGCCAGGCACACCTTTTTCTCCAGGCGAACCTAGTGACACAGACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCAGGCACACCTTTTTCTCCAGGCGAACCTAGTGACACAGACAAT  797

seq1  AGAACTTGGACTTAATGGCTGACGCTCAACACAAATCGCTCTGCTTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGGACTTAATGGCTGACGCTCAACACAAATCGCTCTGCTTATCA  847

seq1  GTCTGCCACCAACACAGCCAGGGGTCCTCAGGCAAGCTAAGCTTCCCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCACCAACACAGCCAGGGGTCCTCAGGCAAGCTAAGCTTCCCCCT  897

seq1  GCCTTTGAAAGACCATCACTGTATAGGGAGAACACAGCTCTGCCGATGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGAAAGACCATCACTGTATAGGGAGAACACAGCTCTGCCGATGCG  947

seq1  GAACCATCAGTTCCGAGGACTGTGAGGCAGTGTGAAGATTCACACGCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCAGTTCCGAGGACTGTGAGGCAGTGTGAAGATTCACACGCCAT  997

seq1  ATATGGACCTATGACACACAGACACAGGTATACCACCAGCAGCCTAGACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGACCTATGACACACAGACACAGGTATACCACCAGCAGCCTAGACT  1047

seq1  GTCATAGCAAGTCATTGGAATTC  1073
      |||||||||||||||||||||||
seq2  GTCATAGCAAGTCATTGGAATTC  1070