BAC Information

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BAC

Clone NameB6Ng01-135M09
Chromosome8 (Build37)
Map Location 56,082,882 - 56,207,385
singlet/doubletdoublet
Overlap geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
Upstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135M09.bB6Ng01-135M09.g
ACCDH935728DH935729
length4641,048
definitionDH935728|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M09, 5' end.DH935729|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,206,808 - 56,207,385)(56,082,882 - 56,083,928)
sequence
gaattcattctcattggacctttgcctgcttctctggctcatgcctgtct
cactttttctcactatcaatgttttatctctcttttctgtctctccttta
cacactatgtgtgattacccaatactcactttacaattagtgggtatact
gctggttttctccttggcttttgctgacaccaacatgtgaccttgcttgc
atccctaggaccctctaaagcatactttaattttaagtgccaatccatct
gagctcttaccctaatgagagacaatgtctgggaactttggatcaatttt
gttctcaatcctataggcaagttatttctctctctctctctctctctctc
tctctctctctctctctctctctctctgtctctctctctttgtgtctctg
tccttttttcaatcactcgcacccaacaacctcaataacacacacacaca
cacacacacacaaa
gaattcactgtagtgactgacacatggcaaccatcaagtaattgctagct
attgaaagcatttattttccttttgtcttgggttaaccagaatatttaga
tcatctaggaagtctactgaatgacctacaatcattagttgcatattaat
ggtattatttttaattaaaattgttgttaaattattttccatttcatttg
ctccttccaatccctcctgtgctgaccctcttttgatccttctccaaatc
atggcctattttttttagtttttattgctacatatatatgcaaagaattt
ctaaatatatacatacaacctcctcattttgtttagtgctacttgtttga
aaataaaataaatatattttttttaatttacagaaaagtaatcctgtcaa
tggattaaaaatccattttcaattttgaaagaaagatatgtttatgtttt
cttcacttgtatcctttctgtcactctaataaaaaactctcaacaaattc
atcttagaaaaggaaaggatatatttgtattaaatttctaggtactgcag
tccaccactgaggactgtaagtcaagttaagctaaagatgcaaggcagga
acttaaggcagagacatggaggaatgatgcttgtaaggtgactctctggc
tcactcttattttccaagcttcatattttattttatttttaaacagctct
ttatatttggatatctatattgtaacaaaaactattttatatccctattc
tttacccattttaagtaacatacatcgaagtaattagaaaaaaatcagag
agtttgcaaatatgataaagaggagctcctttcattaactcatagcaata
tgaatttctgtttttatattcctttatctgaagtttccaaagcactttca
aagactagaactattaccagtagctgtcaggggataaaacacagatattc
aagaagatcaaccagatgttgccaggaaagtcttcacttaaccagggaac
agaaggtagggattggtgagtaggggagcagggccgggggaaggggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_56206808_56207385
seq2: B6Ng01-135M09.b_47_510 (reverse)

seq1  TTTGTGTGTGTGTGTGTGCCTGTGTGTGTGTGGGGGGGGAGTGTACATGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATATGTGTGTGCATGCATGCCCTCATGTGTGTGTATTTTTTATGGGTATG  100
                                                      | 
seq2  ------------------------------------------------TT  2

seq1  TGTCTGTGAGTGTGTTCATGTGTGTGTGTGGTACAACTATTTGTATGTGT  150
      ||| |||| |||||    |||||||||||  |  |  |  |||  || | 
seq2  TGTGTGTGTGTGTG----TGTGTGTGTGTTATTGAGGTTGTTGGGTGCGA  48

seq1  GTGATGAAGAAAAGGAAAGTTACACGAGTACAGAGAGGCAGAGAGAGAGA  200
      |||||  | ||||||| ||  |||| |            |||||||||||
seq2  GTGATTGAAAAAAGGACAGAGACACAA------------AGAGAGAGAGA  86

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  136

seq1  GAAATAACTTGCCTATAGGATTGAGAACAAAACTGATCCAAAGTTCCCAG  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAATAACTTGCCTATAGGATTGAGAACAAAATTGATCCAAAGTTCCCAG  186

seq1  ACATTGTCTCTCATTAGCGTAAGAGCTCAGATGGATTGGCACTTAAAATT  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACATTGTCTCTCATTAGGGTAAGAGCTCAGATGGATTGGCACTTAAAATT  236

seq1  AAAGTATGCTTTAGAGGGTCCTAGGGATGCAAGCAAGGTCACATGTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGCTTTAGAGGGTCCTAGGGATGCAAGCAAGGTCACATGTTGGT  286

seq1  GTCAGCAAAAGCCAAGGAGAAAACCAGCAGTATACCCACTAATTGTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAAAAGCCAAGGAGAAAACCAGCAGTATACCCACTAATTGTAAAG  336

seq1  TGAGTATTGGGTAATCACACATAGTGTGTAAAGGAGAGACAGAAAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTGGGTAATCACACATAGTGTGTAAAGGAGAGACAGAAAAGAGA  386

seq1  GATAAAACATTGATAGTGAGAAAAAGTGAGACAGGCATGAGCCAGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACATTGATAGTGAGAAAAAGTGAGACAGGCATGAGCCAGAGAAG  436

seq1  CAGGCAAAGGTCCAATGAGAATGAATTC  578
      ||||||||||||||||||||||||||||
seq2  CAGGCAAAGGTCCAATGAGAATGAATTC  464

seq1: chr8_56082882_56083928
seq2: B6Ng01-135M09.g_69_1116

seq1  GAATTCACTGTAGTGACTGACACATGGCAACCATCAAGTAATTGCTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAGTGACTGACACATGGCAACCATCAAGTAATTGCTAGCT  50

seq1  ATTGAAAGCATTTATTTTCCTTTTGTCTTGGGTTAACCAGAATATTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGCATTTATTTTCCTTTTGTCTTGGGTTAACCAGAATATTTAGA  100

seq1  TCATCTAGGAAGTCTACTGAATGACCTACAATCATTAGTTGCATATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAGGAAGTCTACTGAATGACCTACAATCATTAGTTGCATATTAAT  150

seq1  GGTATTATTTTTAATTAAAATTGTTGTTAAATTATTTTCCATTTCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATTTTTAATTAAAATTGTTGTTAAATTATTTTCCATTTCATTTG  200

seq1  CTCCTTCCAATCCCTCCTGTGCTGACCCTCTTTTGATCCTTCTCCAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCAATCCCTCCTGTGCTGACCCTCTTTTGATCCTTCTCCAAATC  250

seq1  ATGGCCTATTTTTTTTAGTTTTTATTGCTACATATATATGCAAAGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTATTTTTTTTAGTTTTTATTGCTACATATATATGCAAAGAATTT  300

seq1  CTAAATATATACATACAACCTCCTCATTTTGTTTAGTGCTACTTGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATATACATACAACCTCCTCATTTTGTTTAGTGCTACTTGTTTGA  350

seq1  AAATAAAATAAATATATTTTTTTTAATTTACAGAAAAGTAATCCTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAATATATTTTTTTTAATTTACAGAAAAGTAATCCTGTCAA  400

seq1  TGGATTAAAAATCCATTTTCAATTTTGAAAGAAAGATATGTTTATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAAAAATCCATTTTCAATTTTGAAAGAAAGATATGTTTATGTTTT  450

seq1  CTTCACTTGTATCCTTTCTGTCACTCTAATAAAAAACTCTCAACAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTGTATCCTTTCTGTCACTCTAATAAAAAACTCTCAACAAATTC  500

seq1  ATCTTAGAAAAGGAAAGGATATATTTGTATTAAATTTCTAGGTACTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAAAAGGAAAGGATATATTTGTATTAAATTTCTAGGTACTGCAG  550

seq1  TCCACCACTGAGGACTGTAAGTCAAGTTAAGCTAAAGATGCAAGGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACTGAGGACTGTAAGTCAAGTTAAGCTAAAGATGCAAGGCAGGA  600

seq1  ACTTAAGGCAGAGACATGGAGGAATGATGCTTGTAAGGTGACTCTCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGCAGAGACATGGAGGAATGATGCTTGTAAGGTGACTCTCTGGC  650

seq1  TCACTCTTATTTTCCAAGCTTCATATTTTATTTTATTTTTAAACAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTATTTTCCAAGCTTCATATTTTATTTTATTTTTAAACAGCTCT  700

seq1  TTATATTTGGATATCTATATTGTAACAAAAACTATTTTATATCCCTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGGATATCTATATTGTAACAAAAACTATTTTATATCCCTATTC  750

seq1  TTTACCCATTTTAAGTAACATACATCGAAGTAATTAGAAAAAAATCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCATTTTAAGTAACATACATCGAAGTAATTAGAAAAAAATCAGAG  800

seq1  AGTTTGCAAATATGATAAAGAGGAGCTCCTTTCAATTAACTCATAGCAAT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTTTGCAAATATGATAAAGAGGAGCTCCTTTC-ATTAACTCATAGCAAT  849

seq1  ATGAATTTCTGTTTTTATATTTCCTTTATCTGAAGTTTCCAAAGCACTTT  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGAATTTCTGTTTTTATA-TTCCTTTATCTGAAGTTTCCAAAGCACTTT  898

seq1  CAAAGACTAGAACTATTACCAGTAGCTGTCAGGGGATAAAACACAGATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTAGAACTATTACCAGTAGCTGTCAGGGGATAAAACACAGATAT  948

seq1  TCAAGAAGATCAACCAGATGTTGCCAGGAAAGTCTTCACTTAACCAGGG-  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAAGAAGATCAACCAGATGTTGCCAGGAAAGTCTTCACTTAACCAGGGA  998

seq1  ACAAGAGGTAGGAATGGGTGAGTAGGGGAGCAGGG-CGGGGGAGGGGGT-  1047
      |||  ||||||| || ||||||||||||||||||| ||||||| ||||| 
seq2  ACAGAAGGTAGGGATTGGTGAGTAGGGGAGCAGGGCCGGGGGAAGGGGTT  1048