BAC Information

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BAC

Clone NameB6Ng01-135N24
Chromosome8 (Build37)
Map Location 70,330,483 - 70,470,842
singlet/doubletdoublet
Overlap genePsd3
Upstream geneBC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10, Lpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135N24.bB6Ng01-135N24.g
ACCDH935805DH935806
length1,094736
definitionDH935805|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N24, 5' end.DH935806|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,330,483 - 70,331,592)(70,470,111 - 70,470,842)
sequence
gaattcctgtaatcctaatacttgtgagagggaaacaggagaatcagttg
ttcacactggactacacagcaagaacatggctagcatgggatacatatga
ccctgtttcaaacaaccacaataaaatgcaagggatggatatcagcacat
ttcacctccacacactccagcaacatgctaacttttcaatgtctgttgac
aggttttttaaagatacattgacaaaaggtcagctctacaaatcttacat
gcacctttaaatacgttctggtaactgcattcacctatatgacacaaccc
aagaaagttacagaacataaacaccaactccagaaaattctcccacatcc
ctttagtgatcaattctcttgttaaatggtagatatgtgctcatgacttg
atttgatgtcaagtgaaacatcagctcctcagaagtttgagtctaaatca
taaaccaggaatgttgccccacccgtataattctccctgttcattcttta
gttttctgattagttttgtctactaaatgtttccaaactgaagctgggga
gatgattcagcaaaaaaagtgatttctagccaagcaagagatcctgagtt
caaatctctagcacctatttttttttttagatttatttatttattatgtg
taagtacactgtagctgtcctcagacactccagaagagggcgtcagatct
tgttacagatggttgcgagccaccatgtggttgctgggatttgaactcca
gaccttcggaagagcagtcgggtgctcttatccactgaaccatctcacca
gccctctagcacctattttaaacgtttaatacaatattcccacattttct
gtagaaaaacacaggagtatccctgagcttgctttactgccattgtggcc
aaatcagcttagttagcttcaggctcagtgagagatcttgtctcaaaact
agtgtggagaatgtaatcccaatttagccccacactgctaactcatctat
agtatcattaatcattctataaactatcatgtgttactagtaacaatagt
atgcccgagagaagcatgagtattagatttctgtggagctcaaa
gaattcctgtgtagtttctgtactcagactgatataagctacctttttgt
ttaggtcctgatttacatagcagaagctatgagaacattgcttggccccg
ttctggtactgattatcaaaaccggaagttactctcagttctcaatcttc
caaagcagagagtatggactaaagacctttttgtgtgcagagaatatagt
gactgtcttcctacttgtacctttcttctgctttgctataccataattgc
agttgatcttagccaaaaggccaagaagcgattgctatgccataatttta
gaggacaaaatctgattcctagtttagaaaaattgctttgaagatggcct
agtcggccatcactgggaagagaggccccttggtattgcaaactttatat
gcctcaatatgggggaatgacagggccaagaagcgggagtgggtgggtaa
gggagcagggcagagggagggtatagggaactttcgggatagcatttgaa
atgtatataaagaaaataatttaaaaaaaaagaaaaactgcttcaaaact
ttattaaatctttggtattttggggaggggaatttttatatagtatattt
gatcatattctttcccccaacttctctccagcccactgttagctctctac
cctctaatttcttgtctttttttgaattttaattttttaaaaagcactca
ttgggctcccgttcatgtcatcaatattatttctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_70330483_70331592
seq2: B6Ng01-135N24.b_48_1141

seq1  GAATTCCTGTAATCCTAATACTTGTGAGAGGGAAACAGGAGAATCAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAATCCTAATACTTGTGAGAGGGAAACAGGAGAATCAGTTG  50

seq1  TTCACACTGGACTACACAGCAAGAACATGGCTAGCATGGGATACATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTGGACTACACAGCAAGAACATGGCTAGCATGGGATACATATGA  100

seq1  CCCTGTTTCAAACAACCACAATAAAATGCAAGGGATGGATATCAGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTCAAACAACCACAATAAAATGCAAGGGATGGATATCAGCACAT  150

seq1  TTCACCTCCACACACTCCAGCAACATGCTAACTTTTCAATGTCTGTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCCACACACTCCAGCAACATGCTAACTTTTCAATGTCTGTTGAC  200

seq1  AGGTTTTTTAAAGATACATTGACAAAAGGTCAGCTCTACAAATCTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTTAAAGATACATTGACAAAAGGTCAGCTCTACAAATCTTACAT  250

seq1  GCACCTTTAAATACGTTCTGGTAACTGCATTCACCTATATGACACAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTTAAATACGTTCTGGTAACTGCATTCACCTATATGACACAACCC  300

seq1  AAGAAAGTTACAGAACATAAACACCAACTCCAGAAAATTCTCCCACATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTACAGAACATAAACACCAACTCCAGAAAATTCTCCCACATCC  350

seq1  CTTTAGTGATCAATTCTCTTGTTAAATGGTAGATATGTGCTCATGACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGATCAATTCTCTTGTTAAATGGTAGATATGTGCTCATGACTTG  400

seq1  ATTTGATGTCAAGTGAAACATCAGCTCCTCAGAAGTTTGAGTCTAAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGTCAAGTGAAACATCAGCTCCTCAGAAGTTTGAGTCTAAATCA  450

seq1  TAAACCAGGAATGTTGCCCCACCCGTATAATTCTCCCTGTTCATTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGGAATGTTGCCCCACCCGTATAATTCTCCCTGTTCATTCTTTA  500

seq1  GTTTTCTGATTAGTTTTGTCTACTAAATGTTTCCAAACTGAAGCTGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGATTAGTTTTGTCTACTAAATGTTTCCAAACTGAAGCTGGGGA  550

seq1  GATGATTCAGCAAAAAAAGTGATTTCTAGCCAAGCAAGAGATCCTGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCAGCAAAAAAAGTGATTTCTAGCCAAGCAAGAGATCCTGAGTT  600

seq1  CAAATCTCTAGCACCTATTTTTTTTTTTAGATTTATTTATTTATTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCTAGCACCTATTTTTTTTTTTAGATTTATTTATTTATTATGTG  650

seq1  TAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGCGTCAGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGCGTCAGATCT  700

seq1  TGTTACAGATGGTTGCGAGCCACCATGTGGTTGCTGGGATTTGAACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGATGGTTGCGAGCCACCATGTGGTTGCTGGGATTTGAACTCCA  750

seq1  GACCTTCGGAAGAGCAGTCGGGTGCTCTTATCCACTGAACCATCTCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCGGAAGAGCAGTCGGGTGCTCTTATCCACTGAACCATCTCACCA  800

seq1  GCCCTCTAGCACCTATTTTAAACGTTTAATACAATATTCCCACATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTAGCACCTATTTTAAACGTTTAATACAATATTCCCACATTTTCT  850

seq1  GTAGAAAAACACAGGAGTATCCCTGAGCTTGCTTTACTGCCATTGTGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAACACAGGAGTATCCCTGAGCTTGCTTTACTGCCATTGTGGCC  900

seq1  AAATCAGCTTAGTTAGCTTCAGGCTCAGTGAGAGATCTTGTCTCAAAAAC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATCAGCTTAGTTAGCTTCAGGCTCAGTGAGAGATCTTGTCTC-AAAAC  949

seq1  TAGTGTGGAGAATGTAATCCCAAATTTAGCCCCAACACCTGCTAACTCAT  1000
      ||||||||||||||||||||| ||||||||||| ||| ||||||||||||
seq2  TAGTGTGGAGAATGTAATCCC-AATTTAGCCCC-ACA-CTGCTAACTCAT  996

seq1  CTAATAGTATTCATTAATCATTTCCTATAAAACTATTCATGTGTTTACAT  1050
      || |||||| ||||||||||||  |||| |||||| ||||||| |||| |
seq2  CT-ATAGTA-TCATTAATCATT--CTAT-AAACTA-TCATGTG-TTAC-T  1038

seq1  AGTTAACAAATAGTATGCCCAGAGGATAGCATGAAGTATTTAGATTTCTG  1100
      || |||| |||||||||||| |||   |||||| |||| |||||||||||
seq2  AG-TAAC-AATAGTATGCCC-GAGAGAAGCATG-AGTA-TTAGATTTCTG  1083

seq1  T-GAGCTCAAA  1110
      | |||||||||
seq2  TGGAGCTCAAA  1094

seq1: chr8_70470111_70470842
seq2: B6Ng01-135N24.g_68_803 (reverse)

seq1  CTAGAAAT-ATATTGATGACATGAACGGGAG-CCAATGAGTGC-TTTTAA  47
      |||||||| |||||||||||||||||||||| ||||||||||| ||||||
seq2  CTAGAAATAATATTGATGACATGAACGGGAGCCCAATGAGTGCTTTTTAA  50

seq1  AAAATTAAAATTCAAAAAAAGACAAGAAATTAGAGGGTAGAGAGCTAACA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAATTCAAAAAAAGACAAGAAATTAGAGGGTAGAGAGCTAACA  100

seq1  GTGGGCTGGAGAGAAGTT-GGGGAAAGAATATGATCAAATATACTATATA  146
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGGCTGGAGAGAAGTTGGGGGAAAGAATATGATCAAATATACTATATA  150

seq1  AAAATTCCCCTCCCCAAAATACCAAAGATTTAATAAAGTTTTGAAGCAGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCCCTCCCCAAAATACCAAAGATTTAATAAAGTTTTGAAGCAGT  200

seq1  TTTTCTTTTTTTTTAAATTATTTTCTTTATATACATTTCAAATGCTATCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTTTAAATTATTTTCTTTATATACATTTCAAATGCTATCC  250

seq1  CGAAAGTTCCCTATACCCTCCCTCTGCCCTGCTCCCTTACCCACCCACTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGTTCCCTATACCCTCCCTCTGCCCTGCTCCCTTACCCACCCACTC  300

seq1  CCGCTTCTTGGCCCTGTCATTCCCCCATATTGAGGCATATAAAGTTTGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTCTTGGCCCTGTCATTCCCCCATATTGAGGCATATAAAGTTTGCA  350

seq1  ATACCAAGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCAAA  400

seq1  GCAATTTTTCTAAACTAGGAATCAGATTTTGTCCTCTAAAATTATGGCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTTCTAAACTAGGAATCAGATTTTGTCCTCTAAAATTATGGCAT  450

seq1  AGCAATCGCTTCTTGGCCTTTTGGCTAAGATCAACTGCAATTATGGTATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCGCTTCTTGGCCTTTTGGCTAAGATCAACTGCAATTATGGTATA  500

seq1  GCAAAGCAGAAGAAAGGTACAAGTAGGAAGACAGTCACTATATTCTCTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAGAAGAAAGGTACAAGTAGGAAGACAGTCACTATATTCTCTGC  550

seq1  ACACAAAAAGGTCTTTAGTCCATACTCTCTGCTTTGGAAGATTGAGAACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAAGGTCTTTAGTCCATACTCTCTGCTTTGGAAGATTGAGAACT  600

seq1  GAGAGTAACTTCCGGTTTTGATAATCAGTACCAGAACGGGGCCAAGCAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAACTTCCGGTTTTGATAATCAGTACCAGAACGGGGCCAAGCAAT  650

seq1  GTTCTCATAGCTTCTGCTATGTAAATCAGGACCTAAACAAAAAGGTAGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATAGCTTCTGCTATGTAAATCAGGACCTAAACAAAAAGGTAGCT  700

seq1  TATATCAGTCTGAGTACAGAAACTACACAGGAATTC  732
      ||||||||||||||||||||||||||||||||||||
seq2  TATATCAGTCTGAGTACAGAAACTACACAGGAATTC  736