BAC Information

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BAC

Clone NameB6Ng01-137K07
Chromosome10 (Build37)8 (Build37)
Map Location 75,956,128 - 75,957,20798,297,554 - 98,297,761
singlet/doubletsingletsinglet
Overlap geneMcm3ap
Upstream gene1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik
Downstream geneLss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137K07.bB6Ng01-137K07.g
ACCDH937111DH937112
length1,079972
definitionDH937111|Mus musculus domesticus DNA, BAC clone: B6Ng01-137K07, 5' end.DH937112|Mus musculus domesticus DNA, BAC clone: B6Ng01-137K07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,956,128 - 75,957,207)(98,297,554 - 98,297,761)
sequence
gaattctttaagtattatctttgtgcttttcttccgtttacccctaggtt
gaagcaagagagagaactgatgttaactcagctgagcgagggtctggccg
cagagctgacagaactcacggtgacagagtgtgtgtgggaaacctgctct
caggagctacagtgagtgacatactgtgtcctgaatgtcaggaggaagga
gggactgtggccaagctgttgtaatgatgtgtatgcatatcatggtctct
ctttctagccccggctgtcctgtagacaggctggtcttggcctcagacac
agagagctccatctgcctagcttcccaagtactgcatcaaaagcttctag
acagatgtagcatgctgttttctgatagggaggccctctgagtcagtgtc
cctatcaggaagcatgagatgtgtctgttggcagatttactagagaacct
ttgtatagtaggccatatgccattattcttcaactaagggagcctttctt
tcttttctttttttttcctttccctttccccatcttgctctggtccccga
gagcagggatagggattgtttgtttgtttgtttgtttgtttctctctcat
tacggatggttgtgagccatcatgtggttgctgggatttgaactcttgac
ttccaggagagccctcagccctcttaaccactgagccatctcaccagccc
taaggaagcctttctaaacttgtgtgtgaggcttccttggccttttcact
tgagagctgttgaggaaagtctgccctgtgcttctgtcctgctgagagca
ttagctggacggagcacagtgcacggcacagcgcccaccgctcagaggca
gtgtgtttgcagtccgtgttcttcctagtccgagacttgggagcctgtct
ctcagttgctataaggaagagatctcacaaacgatgtcaaatgttcattc
tttgaggcaggatcatacttttgtaggccagaatggcctagccactttac
tatgtagtcatgtggtctttgaacttgggtaattctcctatgtgagcctt
ccatgtaccagataattagtaatatcatt
gaattcatttttataataagatggtcatgaacctgtgcagacgaggaaag
ggaggctctggtttaaaggtgacctggctgggggctggagacatggctca
gcagttaagagcactgactgctcttcctgaggtcctgagttcaattccca
gccaccacgtggtggctcacaaccatctgtaatggaatctgatgccctct
tctggtgtgtctgaagatagctacagtgtactcgtcacatatataaaata
actagattaaatcttttttaaaaagtgatctgtctgggtatcaaattgac
aatgggtagagctgggatgacagggtctggaatcacacaggtgacaagtc
tctgggcatgcttgtgaagatctaggtcaggttaaccgaggcaggaggac
acaactttcacagcagcatcctttcatgggctagggtcctggaatacatg
gagaggagaagagaggctgtgtaccagcctattccctctgctccctgact
gtgcatatgatgtgacggctgcctctatgtctgccatgctttccctgcct
tgatggactgtgccccacactgtgagccaaaaataatcccttcatcctca
cttttgttttgacatgctgttcttttccacagcagcataggtagctaaca
caggtgctgacaaggatgcagaacactgagagagcccaggtggttggtgg
agaattgtttcctttctaaaaacacgtgcctgctggacacgtgactgcct
ggcaacacagcccagcccactcctaggttttgaccctagaggggcacaca
cacacacacagagccatatacttgagtgattccatagcatgaccactgtc
actcaattatgaaaagggccaccattagaggctcaacaagcagctgactg
agacagatacttacacccaacattgactgaagtcaggacctctgtggttg
attagggaaatgctggaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_75956128_75957207
seq2: B6Ng01-137K07.b_47_1125

seq1  GAATTCTTTAAGTATTATCTTTGTGCTTTTCTTCCGTTTACCCCTAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGTATTATCTTTGTGCTTTTCTTCCGTTTACCCCTAGGTT  50

seq1  GAAGCAAGAGAGAGAACTGATGTTAACTCAGCTGAGCGAGGGTCTGGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGAGAGAGAACTGATGTTAACTCAGCTGAGCGAGGGTCTGGCCG  100

seq1  CAGAGCTGACAGAACTCACGGTGACAGAGTGTGTGTGGGAAACCTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGACAGAACTCACGGTGACAGAGTGTGTGTGGGAAACCTGCTCT  150

seq1  CAGGAGCTACAGTGAGTGACATACTGTGTCCTGAATGTCAGGAGGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTACAGTGAGTGACATACTGTGTCCTGAATGTCAGGAGGAAGGA  200

seq1  GGGACTGTGGCCAAGCTGTTGTAATGATGTGTATGCATATCATGGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTGGCCAAGCTGTTGTAATGATGTGTATGCATATCATGGTCTCT  250

seq1  CTTTCTAGCCCCGGCTGTCCTGTAGACAGGCTGGTCTTGGCCTCAGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGCCCCGGCTGTCCTGTAGACAGGCTGGTCTTGGCCTCAGACAC  300

seq1  AGAGAGCTCCATCTGCCTAGCTTCCCAAGTACTGCATCAAAAGCTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTCCATCTGCCTAGCTTCCCAAGTACTGCATCAAAAGCTTCTAG  350

seq1  ACAGATGTAGCATGCTGTTTTCTGATAGGGAGGCCCTCTGAGTCAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTAGCATGCTGTTTTCTGATAGGGAGGCCCTCTGAGTCAGTGTC  400

seq1  CCTATCAGGAAGCATGAGATGTGTCTGTTGGCAGATTTACTAGAGAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAGGAAGCATGAGATGTGTCTGTTGGCAGATTTACTAGAGAACCT  450

seq1  TTGTATAGTAGGCCATATGCCATTATTCTTCAACTAAGGGAGCCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGTAGGCCATATGCCATTATTCTTCAACTAAGGGAGCCTTTCTT  500

seq1  TCTTTTCTTTTTTTTTCCTTTCCCTTTCCCCATCTTGCTCTGGTCCCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTTTTTTCCTTTCCCTTTCCCCATCTTGCTCTGGTCCCCGA  550

seq1  GAGCAGGGATAGGGATTGTTTGTTTGTTTGTTTGTTTGTTTCTCTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGATAGGGATTGTTTGTTTGTTTGTTTGTTTGTTTCTCTCTCAT  600

seq1  TACGGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAACTCTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAACTCTTGAC  650

seq1  TTCCAGGAGAGCCCTCAGCCCTCTTAACCACTGAGCCATCTCACCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGAGCCCTCAGCCCTCTTAACCACTGAGCCATCTCACCAGCCC  700

seq1  TAAGGAAGCCTTTCTAAACTTGTGTGTGAGGCTTCCTTGGCCTTTTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGCCTTTCTAAACTTGTGTGTGAGGCTTCCTTGGCCTTTTCACT  750

seq1  TGAGAGCTGTTGAGGAAGGTCTGCCCTGTGCTTCTGTCCTGCTGAGAGCA  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAGAGCTGTTGAGGAAAGTCTGCCCTGTGCTTCTGTCCTGCTGAGAGCA  800

seq1  TTAGCTGGACGGAGCACAGTGCACGGCACAGCGCCCACCGCTCAGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGACGGAGCACAGTGCACGGCACAGCGCCCACCGCTCAGAGGCA  850

seq1  GTGTGTTTGCAGTCCGTGTTCTTCCTAGTCCGAGACTTGGGAGCCTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGCAGTCCGTGTTCTTCCTAGTCCGAGACTTGGGAGCCTGTCT  900

seq1  CTCCAGTTGCTATAAGGAAGAGATCTCACAAAACGATGTCAAATGTCCAT  950
      || |||||||||||||||||||||||||| |||||||||||||||| |||
seq2  CT-CAGTTGCTATAAGGAAGAGATCTCAC-AAACGATGTCAAATGTTCAT  948

seq1  TCTCTGAGGCAGGATCATAC-TTTGTAGCCCAGAATGGCCTAG-CAC-TT  997
      ||| |||||||||||||||| ||||||| |||||||||||||| ||| ||
seq2  TCTTTGAGGCAGGATCATACTTTTGTAGGCCAGAATGGCCTAGCCACTTT  998

seq1  ACTATGTAGTTCATGTTGGTC-TTGAACTTGGGTTATTCTCCTATGTGAG  1046
      ||||||||| ||||| ||||| |||||||||||| |||||||||||||||
seq2  ACTATGTAG-TCATG-TGGTCTTTGAACTTGGGTAATTCTCCTATGTGAG  1046

seq1  CCTTCCATGTACTAGATTAATTTAGT-ATATCATT  1080
      |||||||||||| ||||  | ||||| ||||||||
seq2  CCTTCCATGTACCAGAT--AATTAGTAATATCATT  1079

seq1: chr8_98297554_98297761
seq2: B6Ng01-137K07.g_149_341 (reverse)

seq1  TTTTTAAAAAAGATTTAACTTTCATTTTTTTTAAAGATTTATTTATTATT  50
      |||||||||||||||||                   || || ||||| ||
seq2  TTTTTAAAAAAGATTTA-------------------ATCTAGTTATT-TT  30

seq1  ATATAT-----GAGTACACTGTAGCTGACTTCAGACACACCAGAAGAGGG  95
      ||||||     |||||||||||||||  ||||||||||||||||||||||
seq2  ATATATGTGACGAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGG  80

seq1  CATCAGATCTCATTGCCGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT  145
      ||||||||  |||| | |||||||||||||||||| ||||| ||||||| 
seq2  CATCAGATTCCATTACAGATGGTTGTGAGCCACCACGTGGTGGCTGGGAA  130

seq1  TTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCC  195
      |||||||||||||||  |||||||||||||||||||||||| ||||||||
seq2  TTGAACTCAGGACCTCAGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCC  180

seq1  ATCTCTCCAGCCC  208
      || ||||||||||
seq2  ATGTCTCCAGCCC  193