BAC Information

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BAC

Clone NameB6Ng01-140A10
Chromosome8 (Build37)
Map Location 96,760,625 - 96,761,241
singlet/doubletsinglet
Overlap geneNup93
Upstream geneAU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, LOC100041555
Downstream geneSlc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140A10.g
ACCDH938862
length788
definitionDH938862|Mus musculus domesticus DNA, BAC clone: B6Ng01-140A10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtgtagaatgaggatatctgcctgtctctgcagagactaaa
ggtgtaccctatcccacccagctagtttgtcttttaaacacataacaaca
taggaacatttcatgggtggctttataaaatattatggataggctatatt
aaaatgtttttgtaagtgtgagcaaatatactacaactatgtggatagtt
tgaataagaatgccccccccataggctcatactgaatgcttactcattat
gggatggcactttttgagaaggattaggaagtgtggccttggtggaagaa
gtgtgtcactgaaggtggccttgaggtttcagaagctcatgccgggccca
gtctttccctctgcctgcctttgggatcacaaatgtaaagctctcagttg
tttctccagtgttgtgatgctcccatcgtgatgacaaggactctgcctct
gaaactgtaagccagcctccagttaaatgttctcttttataaaagaggac
attttataaaagagaacattctatacaaagagttgctttgtcaggttggg
tgtggtggtgtacaccttgaatcccagaactgagaggcagaggcaagtag
atctctgagttcaaggccagcctggtctacagagggagtttcaagacagc
cagggctacacagaaaaactcttaggggtaggagaagagagggttacatt
ggtcatggtatctcttcgcagcaataaaccagtgactaagacaaactgta
aaaacaaaagttataaagagggggagagtatggggggc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96760625_96761241
seq2: B6Ng01-140A10.g_236_851 (reverse)

seq1  GCCCCCCATACTCTCCCCCCTCCTTATAACTTTTGTTTTTACAGTTTGTC  50
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  GCCCCCCATACTCT-CCCCCTCTTTATAACTTTTGTTTTTACAGTTTGTC  49

seq1  TTAGTCACTGGTTTATTGCTGCGAAGAGATACCATGACCAATGTAACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACTGGTTTATTGCTGCGAAGAGATACCATGACCAATGTAACCCT  99

seq1  CTCTTCTCCTACCCCTAAGAGTTTTTCTGTGTAGCCCTGGCTGTCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCCTACCCCTAAGAGTTTTTCTGTGTAGCCCTGGCTGTCTTGAA  149

seq1  ACTCCCTCTGTAGACCAGGCTGGCCTTGAACTCAGAGATCTACTTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCTGTAGACCAGGCTGGCCTTGAACTCAGAGATCTACTTGCCTC  199

seq1  TGCCTCTCAGTTCTGGGATTCAAGGTGTACACCACCACACCCAACCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCAGTTCTGGGATTCAAGGTGTACACCACCACACCCAACCTGAC  249

seq1  AAAGCAACTCTTTGTATAGAATGTTCTCTTTTATAAAATGTCCTCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTCTTTGTATAGAATGTTCTCTTTTATAAAATGTCCTCTTTTA  299

seq1  TAAAAGAGAACATTTAACTGGAGGCTGGCTTACAGTTTCAGAGGCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAACATTTAACTGGAGGCTGGCTTACAGTTTCAGAGGCAGAGT  349

seq1  CCTTGTCATCACGATGGGAGCATCACAACACTGGAGAAACAACTGAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCATCACGATGGGAGCATCACAACACTGGAGAAACAACTGAGAGC  399

seq1  TTTACATTTGTGATCCCAAAGGCAGGCAGAGGGAAAGACTGGGCCCGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTGTGATCCCAAAGGCAGGCAGAGGGAAAGACTGGGCCCGGCA  449

seq1  TGAGCTTCTGAAACCTCAAGGCCACCTTCAGTGACACACTTCTTCCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCTGAAACCTCAAGGCCACCTTCAGTGACACACTTCTTCCACCA  499

seq1  AGGCCACACTTCCTAATCCTTCTCAAAAAGTGCCATCCCATAATGAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACACTTCCTAATCCTTCTCAAAAAGTGCCATCCCATAATGAGTAA  549

seq1  GCATTCAGTATGAGCCTATGGGGGGGGCATTCTTATTCAAACTATCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGTATGAGCCTATGGGGGGGGCATTCTTATTCAAACTATCCACA  599

seq1  TAGTTGTAGTATATTTG  617
      |||||||||||||||||
seq2  TAGTTGTAGTATATTTG  616