BAC Information

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BAC

Clone NameB6Ng01-141P07
Chromosome8 (Build37)
Map Location 108,738,286 - 108,880,779
singlet/doubletdoublet
Overlap genePrmt7, Smpd3
Upstream geneCbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141P07.bB6Ng01-141P07.g
ACCDH940278DH940279
length4661,065
definitionDH940278|Mus musculus domesticus DNA, BAC clone: B6Ng01-141P07, 5' end.DH940279|Mus musculus domesticus DNA, BAC clone: B6Ng01-141P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,738,286 - 108,738,757)(108,879,710 - 108,880,779)
sequence
caagacagccagggctacacacagaaaccctgtctccaaaaccaaaggaa
aacaaaacaaaaagtgtgtgtggtatgacacctgcttgtaatctcagcac
tggggaagcgggcttgctggtcagccagtctagtcccattggtgagctct
aggccagcaagaggcccagactcaaaggaaatgatagcatttgagaggat
gactggcgattttcctatactttttacaatcacatacttgtgcacctaca
catacatgaatgttcacacaacatacaaaatgggtagggagcatggtttc
aacagtgtgagtttatcttaggttacaatccctttttgttgttgttgttt
tgttttgtttttgagacagggtttctttgtatagccctggctgtcctgga
acttactttgtagatcaggctggcctcaaactcagaaatccgcctgcctc
ggcctcccaagtgctg
gaattcctgcacatgtgcacaaggagacaggattaagagtagtaccatgg
acaacattcccaaatcaggagccttctttatagagcctggatatggtggt
gtgtccttacagtgagctcacacagagcagcaaacaccaatggatcatag
ctacatgtggccacaggtaagacactggaataaaacatggggcaggcatg
tggatgcacagtctttatgaaccatggttctatggcattcagttgtctga
gttcttaaacagggaaggagtgagccactgttaagagtcctctccactca
atgctccaagggtcccgatgcctggacttctccaactagaaatggattcc
tctgagccaagaccaggggctgttggaaatccaagagttctgatggtttc
tggttctgtagtgaagtcttgggccccactggtcatattacacacccctc
ccagaaaaaagtagctgagaggaaactgatggtcaggaggctgagtagca
aaaccccaggcacaccgaaatgagggatggactatgtagtgagaagacat
aggagaccaggaaagccaacgaaatgacaagttttaaagaatagttactg
aaagtggttatgtactaggaggtcaatcaaaaccaccaaagaacaaacat
ctgttaattaataatttgacagttaagaaaatattttgtggggctggtga
gatggctcagtgggtaagagcattcaactgttcttccgaaggtccagagt
tcaaatcccagcaaccacatggtggctcacaaccatccgtaacgagatct
gactccctttctggagtgtctgaagacagctacagtatacttacatataa
taaataaatcttttaaaaaaaagaaaatattttgtggttagagatggagt
tcagtcgtggtaaatatttgtgcagcttgcttagagtcctggatgggttc
agtttccagtagggaaaggaggaaggcaatattgcctgtgctataagctg
tagctagagatagagtacttgttaactaggttcaatctctgggaggagga
gatatgaaaagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108738286_108738757
seq2: B6Ng01-141P07.b_50_521

seq1  GAATTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTCCAAAACCA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCCAAGACAGCCAGGGCTACACACAGAAACCCTGTCTCCAAAACCA  50

seq1  AAGGAAAACAAAACAAAAAGTGTGTGTGGTATGACACCTGCTTGTAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACAAAACAAAAAGTGTGTGTGGTATGACACCTGCTTGTAATCT  100

seq1  CAGCACTGGGGAAGCGGGCTTGCTGGTCAGCCAGTCTAGTCCCATTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGGGAAGCGGGCTTGCTGGTCAGCCAGTCTAGTCCCATTGGTG  150

seq1  AGCTCTAGGCCAGCAAGAGGCCCAGACTCAAAGGAAATGATAGCATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGGCCAGCAAGAGGCCCAGACTCAAAGGAAATGATAGCATTTGA  200

seq1  GAGGATGACTGGCGATTTTCCTATACTTTTTACAATCACATACTTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGACTGGCGATTTTCCTATACTTTTTACAATCACATACTTGTGCA  250

seq1  CCTACACATACATGAATGTTCACACAACATACAAAATGGGTAGGGAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACATACATGAATGTTCACACAACATACAAAATGGGTAGGGAGCAT  300

seq1  GGTTTCAACAGTGTGAGTTTATCTTAGGTTACAATCCCTTTTTGTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAACAGTGTGAGTTTATCTTAGGTTACAATCCCTTTTTGTTGTTG  350

seq1  TTGTTTTGTTTTGTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  400
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTTGAGACAGGGTTTCTTTGTATAGCCCTGGCTGT  400

seq1  CCTGGAACTTACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCGCC  450
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTGGAACTTACTTTGTAGATCAGGCTGGCCTCAAACTCAGAAATCCGCC  450

seq1  TGCCTCGGCCTCCCAAGTGCTG  472
      ||||||||||||||||||||||
seq2  TGCCTCGGCCTCCCAAGTGCTG  472

seq1: chr8_108879710_108880779
seq2: B6Ng01-141P07.g_69_1133 (reverse)

seq1  CTCCCTTCTC-CATCTCCTCCTCCCAGAGAGTTGAACCTAGTTAAACAAG  49
      ||||||| ||  |||||||||||||||||| |||||||||||| ||||||
seq2  CTCCCTTTTCATATCTCCTCCTCCCAGAGA-TTGAACCTAGTT-AACAAG  48

seq1  TACTCTATCTCTAAGCTACAGC-TATAGCACAGGCAATAATGCCTTCCTC  98
      |||||||||||| ||||||||| |||||||||||||||| ||||||||||
seq2  TACTCTATCTCT-AGCTACAGCTTATAGCACAGGCAATATTGCCTTCCTC  97

seq1  CTTTCCCTACTGGAAACTGAACCCATCCAGGACTCTAAGCAAGCTGCACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTACTGGAAACTGAACCCATCCAGGACTCTAAGCAAGCTGCACA  147

seq1  AATAATCTACCACGACTGAACTCCATCTCTAACCACAAAATATTTTCTTT  198
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  AAT-ATTTACCACGACTGAACTCCATCTCTAACCACAAAATATTTTCTTT  196

seq1  TTTTTTAAAAAGATTTATTTATTATATGTAAGTATACTGTAGCTGTCTTC  248
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTT--AAAAGATTTATTTATTATATGTAAGTATACTGTAGCTGTCTTC  244

seq1  AGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCA  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGACACTCCAGAA-AGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCA  293

seq1  CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAACAGTTGGA  348
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAACAGTTGAA  343

seq1  TGCTCTTACCCACTGAGCCATCTCACCAGCCCCACAAAATATTTTCTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTACCCACTGAGCCATCTCACCAGCCCCACAAAATATTTTCTTAA  393

seq1  CTGTCAAATTATTAATTGACAGATGTTTGTTCTTTGGTGGTTTTGATTGA  448
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTCAAATTATTAATTAACAGATGTTTGTTCTTTGGTGGTTTTGATTGA  443

seq1  CCTCCTAGTACATAACCACTTTCAGTAACTATTCTTTAAAACTTGTCATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGTACATAACCACTTTCAGTAACTATTCTTTAAAACTTGTCATT  493

seq1  TCGTTGGCTTTCCTGGTCTCCTATGTCTTCTCACTACATAGTCCATCCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGGCTTTCCTGGTCTCCTATGTCTTCTCACTACATAGTCCATCCCT  543

seq1  CATTTCGGTGTGCCTGGGGTTTTGCTACTCAGCCTCCTGACCATCAGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGGTGTGCCTGGGGTTTTGCTACTCAGCCTCCTGACCATCAGTTT  593

seq1  CCTCTCAGCTACTTTTTTCTGGGAGGGGTGTGTAATATGACCAGTGGGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCTACTTTTTTCTGGGAGGGGTGTGTAATATGACCAGTGGGGC  643

seq1  CCAAGACTTCACTACAGAACCAGAAACCATCAGAACTCTTGGATTTCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTTCACTACAGAACCAGAAACCATCAGAACTCTTGGATTTCCAA  693

seq1  CAGCCCCTGGTCTTGGCTCAGAGGAATCCATTTCTAGTTGGAGAAGTCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTGGTCTTGGCTCAGAGGAATCCATTTCTAGTTGGAGAAGTCCA  743

seq1  GGCATCGGGACCCTTGGAGCATTGAGTGGAGAGGACTCTTAACAGTGGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGGGACCCTTGGAGCATTGAGTGGAGAGGACTCTTAACAGTGGCT  793

seq1  CACTCCTTCCCTGTTTAAGAACTCAGACAACTGAATGCCATAGAACCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTCCCTGTTTAAGAACTCAGACAACTGAATGCCATAGAACCATG  843

seq1  GTTCATAAAGACTGTGCATCCACATGCCTGCCCCATGTTTTATTCCAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAAGACTGTGCATCCACATGCCTGCCCCATGTTTTATTCCAGTG  893

seq1  TCTTACCTGTGGCCACATGTAGCTATGATCCATTGGTGTTTGCTGCTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTGTGGCCACATGTAGCTATGATCCATTGGTGTTTGCTGCTCTG  943

seq1  TGTGAGCTCACTGTAAGGACACACCACCATATCCAGGCTCTATAAAGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTCACTGTAAGGACACACCACCATATCCAGGCTCTATAAAGAAG  993

seq1  GCTCCTGATTTGGGAATGTTGTCCATGGTACTACTCTTAATCCTGTCTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGATTTGGGAATGTTGTCCATGGTACTACTCTTAATCCTGTCTCC  1043

seq1  TTGTGCACATGTGCAGGAATTC  1070
      ||||||||||||||||||||||
seq2  TTGTGCACATGTGCAGGAATTC  1065