BAC Information

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BAC

Clone NameB6Ng01-142I23
Chromosome8 (Build37)
Map Location 129,142,696 - 129,262,687
singlet/doubletdoublet
Overlap genenone
Upstream gene4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
Downstream geneTomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142I23.bB6Ng01-142I23.g
ACCDH940727DH940728
length4291,134
definitionDH940727|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I23, 5' end.DH940728|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,142,696 - 129,143,130)(129,261,539 - 129,262,687)
sequence
cttgggccagtgctgaggcagaggaaaggtttctggtggttggtctccct
agaggcctgggctactgctgattaactgaccccacatcaaagcaaaggag
atgcggatgagaataagccagattgggcagaacttcctgcagttccccaa
gccattgtgcttcagaaagagggaaagaaaagacattctctttagaggat
gataatgattgatgatgatgatggtgatggtggtgtgtaatctgtggagc
aaggcccagtcacacagaaaaagagagtgttttggcattatagattgttg
agtagcactccaggaagcccaagtacatttcccaagcttgatgtcattaa
caaagaggtgtatacaatgtctgtctgtctgtttgtctgtctgtcctctt
cttcccttcttccttccctcaacaactca
gaattcaaggccacatcctgggcttgagaaacttacaaacactttgggag
gtaggagattccacctggacaaggccactgtatgtctcacctccaggaat
ctcatttctagaatactggagagttgcagttggcagcctagagccctttg
gggcatcactaacagtccccctagagatctaccctcttctgcttggcagt
atcttctgccattgggtcaccacaagcaagattttgagcttatggtggcc
tctgtctgttctcattctccttccccgtggacactctcctgtctcaggct
tttgatttctcacatcgggatcttgtcaatgtgctcctgtctcagttctc
catctccagcctgcttcctaagctgcaacaagacagttgttgcatctggg
cctgatggtgccctccctagctacctaggaggttgaggcaggaggtctga
aacttcaagatgcacctgggctatagagtgagttcaaggtcaccttggat
gacttagaccctggcaaagcccaaatctgacctcagagccagtttctgat
accacagagctttgctgtgaaccacctcagccattcaggggtgcagtagt
tctcttggttttgaaattccttgtttctgttacatttcaagtgcctatca
caagcttcttcctcttccccaaagacccccaggaatgggacccagcctcc
atgaccaggaagctcttcacattgttttgcacacagaatgtgccccatat
gtgtaatggtttcagtaagggtttgtctctgacctgcagagactctgtgg
caaccatgctagcagagaaacacccctggtggagtctgggggctgtctat
gacaggcaggagtgttggtcctgactctggacttgctgcagaagctgttg
ggtgctgagaatttcctctaggacagaaatgagacctgaaggaggtagct
ctggagcctgcaggagacaggttgtgtacagatacgcggagtgcccaagg
tgtcaatctgctagtaatggcttcctctagcctggcctcccctggctctc
ccgaggaccagagaataatacctacaggaatgaatgatctctgcttagct
gttgaatatgatgaaaagggccccataaatcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_129142696_129143130
seq2: B6Ng01-142I23.b_51_485

seq1  GAATTCCTTGGGCCAGTGCTGAGGCAGAGGAAAGGTTTCTGGTGGTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGGCCAGTGCTGAGGCAGAGGAAAGGTTTCTGGTGGTTGGT  50

seq1  CTCCCTAGAGGCCTGGGCTACTGCTGATTAACTGACCCCACATCAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGAGGCCTGGGCTACTGCTGATTAACTGACCCCACATCAAAGCA  100

seq1  AAGGAGATGCGGATGAGAATAAGCCAGATTGGGCAGAACTTCCTGCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGCGGATGAGAATAAGCCAGATTGGGCAGAACTTCCTGCAGTT  150

seq1  CCCCAAGCCATTGTGCTTCAGAAAGAGGGAAAGAAAAGACATTCTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGCCATTGTGCTTCAGAAAGAGGGAAAGAAAAGACATTCTCTTTA  200

seq1  GAGGATGATAATGATTGATGATGATGATGGTGATGGTGGTGTGTAATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGATAATGATTGATGATGATGATGGTGATGGTGGTGTGTAATCTG  250

seq1  TGGAGCAAGGCCCAGTCACACAGAAAAAGAGAGTGTTTTGGCATTATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAAGGCCCAGTCACACAGAAAAAGAGAGTGTTTTGGCATTATAGA  300

seq1  TTGTTGAGTAGCACTCCAGGAAGCCCAAGTACATTTCCCAAGCTTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGTAGCACTCCAGGAAGCCCAAGTACATTTCCCAAGCTTGATGT  350

seq1  CATTAACAAAGAGGTGTATACAATGTCTGTCTGTCTGTTTGTCTGTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAAAGAGGTGTATACAATGTCTGTCTGTCTGTTTGTCTGTCTGT  400

seq1  CCTCTTCTTCCCTTCTTCCTTCCCTCAACAACTCA  435
      |||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTCCCTTCTTCCTTCCCTCAACAACTCA  435

seq1: chr8_129261539_129262687
seq2: B6Ng01-142I23.g_69_1202 (reverse)

seq1  CCTGATTTTAGTGGCCCTTTTCATTCTAATTTCCCACAGCTAAGACCAGG  50
      ||||||||  | |||||||||||   | || | | |||||||||  ||| 
seq2  CCTGATTTATGGGGCCCTTTTCA---TCATATTCAACAGCTAAG--CAGA  45

seq1  ACTCATTCATTCCCTTGTAGGTATTATTCTCTGGTTCCTCTGGAGAGCAG  100
        |||||||||||  ||||||||||||||||||| ||||| |||||||  
seq2  GATCATTCATTCC--TGTAGGTATTATTCTCTGG-TCCTCGGGAGAGCCA  92

seq1  GGGGAGCCCAGGCTAGAGGAAGCCACTACTAGCAGA-TGACACCTTGGGG  149
      |||||| |||||||||||||||||| |||||||||| |||||||||||| 
seq2  GGGGAGGCCAGGCTAGAGGAAGCCATTACTAGCAGATTGACACCTTGGG-  141

seq1  CCACTCCGCTGTATCTGTACACACCCTGTCTCCTGCCAGGCTCCAGAGCT  199
       |||||||| ||||||||||||| ||||||||||| ||||||||||||||
seq2  -CACTCCGC-GTATCTGTACACAACCTGTCTCCTG-CAGGCTCCAGAGCT  188

seq1  ACCCCTCCTTCAGGTTCTCATTTCTGTCCTAGAGAAATTTCTCAGCACCC  249
      |  ||||||||||| ||||||||||||||||||| || ||||||||||||
seq2  A--CCTCCTTCAGG-TCTCATTTCTGTCCTAGAGGAAATTCTCAGCACCC  235

seq1  AACAGCTTCCTGCAGCAAGTCCAAGAGTCAGGACCAACACTCCTGCCTGT  299
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  AACAGCTT-CTGCAGCAAGTCC-AGAGTCAGGACCAACACTCCTGCCTGT  283

seq1  CATAGACAGCCCCCAGACTCCACCA-GGGTGTTTCTCTGCTAGCATGGTT  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATAGACAGCCCCCAGACTCCACCAGGGGTGTTTCTCTGCTAGCATGGTT  333

seq1  GCCACAGAGTCTCTGCAGGTCAGAGACAAACCCTTACTGAAACCATTACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGTCTCTGCAGGTCAGAGACAAACCCTTACTGAAACCATTACA  383

seq1  CATATGGGGCACATTCTGTGTGCAAAACAATGTGAAGAGCTTCCTGGTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGGGCACATTCTGTGTGCAAAACAATGTGAAGAGCTTCCTGGTCA  433

seq1  TGGAGGCTGGGTCCCATTCCTGGGGGTCTTTGGGGAAGAGGAAGAAGCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGGGTCCCATTCCTGGGGGTCTTTGGGGAAGAGGAAGAAGCTT  483

seq1  GTGATAGGCACTTGAAATGTAACAGAAACAAGGAATTTCAAAACCAAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGCACTTGAAATGTAACAGAAACAAGGAATTTCAAAACCAAGAG  533

seq1  AACTACTGCACCCCTGAATGGCTGAGGTGGTTCACAGCAAAGCTCTGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGCACCCCTGAATGGCTGAGGTGGTTCACAGCAAAGCTCTGTGG  583

seq1  TATCAGAAACTGGCTCTGAGGTCAGATTTGGGCTTTGCCAGGGTCTAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAACTGGCTCTGAGGTCAGATTTGGGCTTTGCCAGGGTCTAAGT  633

seq1  CATCCAAGGTGACCTTGAACTCACTCTATAGCCCAGGTGCATCTTGAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGGTGACCTTGAACTCACTCTATAGCCCAGGTGCATCTTGAAGT  683

seq1  TTCAGACCTCCTGCCTCAACCTCCTAGGTAGCTAGGGAGGGCACCATCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCTCCTGCCTCAACCTCCTAGGTAGCTAGGGAGGGCACCATCAG  733

seq1  GCCCAGATGCAACAACTGTCTTGTTGCAGCTTAGGAAGCAGGCTGGAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATGCAACAACTGTCTTGTTGCAGCTTAGGAAGCAGGCTGGAGAT  783

seq1  GGAGAACTGAGACAGGAGCACATTGACAAGATCCCGATGTGAGAAATCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACTGAGACAGGAGCACATTGACAAGATCCCGATGTGAGAAATCAA  833

seq1  AAGCCTGAGACAGGAGAGTGTCCACGGGGAAGGAGAATGAGAACAGACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAGACAGGAGAGTGTCCACGGGGAAGGAGAATGAGAACAGACAG  883

seq1  AGGCCACCATAAGCTCAAAATCTTGCTTGTGGTGACCCAATGGCAGAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCATAAGCTCAAAATCTTGCTTGTGGTGACCCAATGGCAGAAGA  933

seq1  TACTGCCAAGCAGAAGAGGGTAGATCTCTAGGGGGACTGTTAGTGATGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCAAGCAGAAGAGGGTAGATCTCTAGGGGGACTGTTAGTGATGCC  983

seq1  CCAAAGGGCTCTAGGCTGCCAACTGCAACTCTCCAGTATTCTAGAAATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGCTCTAGGCTGCCAACTGCAACTCTCCAGTATTCTAGAAATGA  1033

seq1  GATTCCTGGAGGTGAGACATACAGTGGCCTTGTCCAGGTGGAATCTCCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGGAGGTGAGACATACAGTGGCCTTGTCCAGGTGGAATCTCCTA  1083

seq1  CCTCCCAAAGTGTTTGTAAGTTTCTCAAGCCCAGGATGTGGCCTTGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAAGTGTTTGTAAGTTTCTCAAGCCCAGGATGTGGCCTTGAATT  1133

seq1  C  1149
      |
seq2  C  1134