BAC Information

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BAC

Clone NameB6Ng01-142J13
Chromosome8 (Build37)
Map Location 112,896,474 - 113,036,514
singlet/doubletdoublet
Overlap geneHydin, LOC672398
Upstream geneLOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
Downstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J13.bB6Ng01-142J13.g
ACCDH940751DH940752
length1,188800
definitionDH940751|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J13, 5' end.DH940752|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,896,474 - 112,897,690)(113,035,716 - 113,036,514)
sequence
gaattctctccaaaagaaaggtctgaatatttaaagatatttttccaact
agctgctaaagtatttgagccgacccagcgtttctgctcctccaacccca
cccacacctccctcagagtagacctaacctagcagccctaggcttcatct
aaccgagctatcaaaaggatggctcatttcttcattaccacacaagtaat
agtaaccctcgctccgatgttacttaagcctctgagaaacttgctgccct
agcaattcggacatggagagcacagctcaaattcagtttactggatcctt
ttcctcgtttggtgtagagggtgagctcagcagaagcagggtgggtgcga
gtccagatggctagcaagaagatgcagcgctttttgtcctgcgcagccct
tcctctgctccagtcattagctgtgactcacaaggcgaacacgtgggcgc
tgactccttggaaatagacaccaggaaggagcccaaggacgtggatctgc
tgagatgggactgcccttgacaagctctgcccgatcggtcggccatcctt
cagccttgctcattaggattctcctttccggtctttgtgctaaggcccac
gtttggccattgcaccagaacattcactattgtgttgaggaaccagtgtg
ggtggaaagaagcccaggggagccttagaagcagcaaggctgcccattaa
attggccaacacctttccttcctgggagggaaaaagagagacatcacaca
tgggccacctccaccagctaagaaccccatggagtttggtatatttgggt
tgaagataaatcaagacagaaagtacctattgtgaagcttcctctgtcaa
atggatagaacacagggctcctcttagcagcttttagggacattattttg
ggcatcacaactttccttgactatcagtgtcccagctgatggaactgagc
aatctttgcaggctctgtgtcactttggtcttttctctcaacagtaatag
gatagtttactgtcatgtttttagaggtctttttttttttttttttatgg
tgctgtgagaccgtgttttgtaccaaggcgtctagctttgctaatggtgg
atcctgttgaagtatggaaagatgacacgctctccttgtggaatgtcagg
gtgggaatggactgaggtttgggagagggctgcctagg
gaattccaaagagccccagaatataaagtttaaaatcgtcacaagttaca
gggattgagagagacagagggtgacaggagttgaagctagctttataatc
actggagcaggagaactctactgtccacatctttaattctcaggctttca
gaatgatgtggagaccattctgtacacatcagctggagcctgcttccacc
ctcactgcctcgccaacattcccagggtgcctgacccctgtcaggccgcc
acccacctcactgcttggtctttgctcttccacggtgtctcagtgggtac
aacagcctgtgacaatcaataggtgatctctcactgacctagggaacccc
tgtgttttgtttagaactgagatgtgactagaggcagccgccctcccctg
ggtcatggtcagagaagggagagtccacatcatgaaagcagtgtgaacca
gtgtcgagagaggtactggtgagcatcaagcccgggttgtccctggaccc
atcagcttggatccagaccatcttctactgggacaaatgaaatacaaaac
aaaacaaaatgaaacccaacctgtagtggctattcctggttgtcaacttt
tctatatttggaatgaactacaatccagaactggaagggtcaccagtgac
cctaatctggaggctgggagatagaagtttctgacctggatcttggtatg
gagatcttgaagacagggagatctctgagttcaaggtcatctgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtggcacatggaaggaggtcagagga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112896474_112897690
seq2: B6Ng01-142J13.b_46_1233

seq1  GAATTCTCTCCAAAAGAAAGGTCTGAATATTTAAAGATATTTTTCCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAAAAGAAAGGTCTGAATATTTAAAGATATTTTTCCAACT  50

seq1  AGCTGCTAAAGTATTTGAGCCGACCCAGCGTTTCTGCTCCTCCAACCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTAAAGTATTTGAGCCGACCCAGCGTTTCTGCTCCTCCAACCCCA  100

seq1  CCCACACCTCCCTCAGAGTAGACCTAACCTAGCAGCCCTAGGCTTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCTCCCTCAGAGTAGACCTAACCTAGCAGCCCTAGGCTTCATCT  150

seq1  AACCGAGCTATCAAAAGGATGGCTCATTTCTTCATTACCACACAAGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGCTATCAAAAGGATGGCTCATTTCTTCATTACCACACAAGTAAT  200

seq1  AGTAACCCTCGCTCCGATGTTACTTAAGCCTCTGAGAAACTTGCTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCCTCGCTCCGATGTTACTTAAGCCTCTGAGAAACTTGCTGCCCT  250

seq1  AGCAATTCGGACATGGAGAGCACAGCTCAAATTCAGTTTACTGGATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTCGGACATGGAGAGCACAGCTCAAATTCAGTTTACTGGATCCTT  300

seq1  TTCCTCGTTTGGTGTAGAGGGTGAGCTCAGCAGAAGCAGGGTGGGTGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGTTTGGTGTAGAGGGTGAGCTCAGCAGAAGCAGGGTGGGTGCGA  350

seq1  GTCCAGATGGCTAGCAAGAAGATGCAGCGCTTTTTGTCCTGCGCAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATGGCTAGCAAGAAGATGCAGCGCTTTTTGTCCTGCGCAGCCCT  400

seq1  TCCTCTGCTCCAGTCATTAGCTGTGACTCACAAGGCGAACACGTGGGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTCCAGTCATTAGCTGTGACTCACAAGGCGAACACGTGGGCGC  450

seq1  TGACTCCTTGGAAATAGACACCAGGAAGGAGCCCAAGGACGTGGATCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTTGGAAATAGACACCAGGAAGGAGCCCAAGGACGTGGATCTGC  500

seq1  TGAGATGGGACTGCCCTTGACAAGCTCTGCCCGATCGGTCGGCCATCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGGACTGCCCTTGACAAGCTCTGCCCGATCGGTCGGCCATCCTT  550

seq1  CAGCCTTGCTCATTAGGATTCTCCTTTCCGGTCTTTGTGCTAAGGCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGCTCATTAGGATTCTCCTTTCCGGTCTTTGTGCTAAGGCCCAC  600

seq1  GTTTGGCCATTGCACCAGAACATTCACTATTGTGTTGAGGAACCAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCATTGCACCAGAACATTCACTATTGTGTTGAGGAACCAGTGTG  650

seq1  GGTGGAAAGAAGCCCAGGGGAGCCTTAGAAGCAGCAAGGCTGCCCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAGAAGCCCAGGGGAGCCTTAGAAGCAGCAAGGCTGCCCATTAA  700

seq1  ATTGGCCAACACCTTTCCTTCCTGGGAGGGAAAAAGAGAGACATCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCAACACCTTTCCTTCCTGGGAGGGAAAAAGAGAGACATCACACA  750

seq1  T-GGCCACCTCCACCAGCTAAGAACCCCATGGAGTTTGGTATATTTGGGT  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACCTCCACCAGCTAAGAACCCCATGGAGTTTGGTATATTTGGGT  800

seq1  TGAAGATAAAATCAAGACAGAAAGTACCTATTGTGAAGCTTCCTCTGTCA  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAT-AAATCAAGACAGAAAGTACCTATTGTGAAGCTTCCTCTGTCA  849

seq1  AATGGATAGAACACAGGGCTCCCTCTTAGCAGCTTTTAGGGACATTATTT  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATGGATAGAACACAGGGCT-CCTCTTAGCAGCTTTTAGGGACATTATTT  898

seq1  TGAGCATCACAACTTTCCTTGACTATCAGTGTCCCAGCTGATGGAACTGA  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCACAACTTTCCTTGACTATCAGTGTCCCAGCTGATGGAACTGA  948

seq1  GCAATCTTTGCAGGCTCTGTGTCACTTTGGTCTTTTCTCTCAACAGTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTTGCAGGCTCTGTGTCACTTTGGTCTTTTCTCTCAACAGTAAT  998

seq1  AAGGATAGTTTACTTGTCAATGTTTTTAGAGTTCCTTTTTTTTTTTTTTT  1049
       |||||||||||| |||| |||||||||||| ||    ||||||||||||
seq2  -AGGATAGTTTAC-TGTC-ATGTTTTTAGAGGTC----TTTTTTTTTTTT  1041

seq1  TTTTTATTGTTGCTGTTTGAGACCGTTGGTATTTGTACCAA-GCGTCATA  1098
      |||||| || |||||  |||||||||  || |||||||||| ||||| ||
seq2  TTTTTA-TGGTGCTG--TGAGACCGT--GT-TTTGTACCAAGGCGTC-TA  1084

seq1  GCTTTTGCTAGTGGTTGGAT-CTGTTGTAAGTAATGGAAAAGATGACAGC  1147
      || ||||||| ||| ||||| |||||| |||| |||| ||||||||||  
seq2  GC-TTTGCTAATGG-TGGATCCTGTTG-AAGT-ATGG-AAAGATGACACG  1129

seq1  GTCTCATTGGTAGATTGGTCAGTGGTGGGGATTTGGCACTGAGGTTTGGA  1197
       |||| || || || | ||||| |||||| ||   | |||||||||||| 
seq2  CTCTCCTT-GTGGAAT-GTCAG-GGTGGGAAT---GGACTGAGGTTTGG-  1172

seq1  GAGATGGCCCCGTGCCTAGG  1217
      |||| |||    ||||||||
seq2  GAGAGGGC----TGCCTAGG  1188

seq1: chr8_113035716_113036514
seq2: B6Ng01-142J13.g_69_868 (reverse)

seq1  TCCTCTGACCTCCT--CATGTGCACACACACACACACACACACACACACA  48
      ||||||||||||||  ||||||| ||||||||||||||||||||||||||
seq2  TCCTCTGACCTCCTTCCATGTGC-CACACACACACACACACACACACACA  49

seq1  CACACACACAGATGACCTTGAACTCAGAGATCTCCCTGTCTTCAAGATCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGATGACCTTGAACTCAGAGATCTCCCTGTCTTCAAGATCT  99

seq1  CCATACCAAGATCCAGGTCAGAAACTTCTATCTCCCAGCCTCCAGATTAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCAAGATCCAGGTCAGAAACTTCTATCTCCCAGCCTCCAGATTAG  149

seq1  GGTCACTGGTGACCCTTCCAGTTCTGGATTGTAGTTCATTCCAAATATAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGGTGACCCTTCCAGTTCTGGATTGTAGTTCATTCCAAATATAG  199

seq1  AAAAGTTGACAACCAGGAATAGCCACTACAGGTTGGGTTTCATTTTGTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGACAACCAGGAATAGCCACTACAGGTTGGGTTTCATTTTGTTT  249

seq1  TGTTTTGTATTTCATTTGTCCCAGTAGAAGATGGTCTGGATCCAAGCTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTATTTCATTTGTCCCAGTAGAAGATGGTCTGGATCCAAGCTGA  299

seq1  TGGGTCCAGGGACAACCCGGGCTTGATGCTCACCAGTACCTCTCTCGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCAGGGACAACCCGGGCTTGATGCTCACCAGTACCTCTCTCGACA  349

seq1  CTGGTTCACACTGCTTTCATGATGTGGACTCTCCCTTCTCTGACCATGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCACACTGCTTTCATGATGTGGACTCTCCCTTCTCTGACCATGAC  399

seq1  CCAGGGGAGGGCGGCTGCCTCTAGTCACATCTCAGTTCTAAACAAAACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAGGGCGGCTGCCTCTAGTCACATCTCAGTTCTAAACAAAACAC  449

seq1  AGGGGTTCCCTAGGTCAGTGAGAGATCACCTATTGATTGTCACAGGCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTCCCTAGGTCAGTGAGAGATCACCTATTGATTGTCACAGGCTGT  499

seq1  TGTACCCACTGAGACACCGTGGAAGAGCAAAGACCAAGCAGTGAGGTGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCACTGAGACACCGTGGAAGAGCAAAGACCAAGCAGTGAGGTGGG  549

seq1  TGGCGGCCTGACAGGGGTCAGGCACCCTGGGAATGTTGGCGAGGCAGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGCCTGACAGGGGTCAGGCACCCTGGGAATGTTGGCGAGGCAGTGA  599

seq1  GGGTGGAAGCAGGCTCCAGCTGATGTGTACAGAATGGTCTCCACATCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAGCAGGCTCCAGCTGATGTGTACAGAATGGTCTCCACATCATT  649

seq1  CTGAAAGCCTGAGAATTAAAGATGTGGACAGTAGAGTTCTCCTGCTCCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCCTGAGAATTAAAGATGTGGACAGTAGAGTTCTCCTGCTCCAG  699

seq1  TGATTATAAAGCTAGCTTCAACTCCTGTCACCCTCTGTCTCTCTCAATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATAAAGCTAGCTTCAACTCCTGTCACCCTCTGTCTCTCTCAATCC  749

seq1  CTGTAACTTGTGACGATTTTAAACTTTATATTCTGGGGCTCTTTGGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTTGTGACGATTTTAAACTTTATATTCTGGGGCTCTTTGGAATT  799

seq1  C  799
      |
seq2  C  800