BAC Information

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BAC

Clone NameB6Ng01-142J19
Chromosome8 (Build37)
Map Location 89,011,892 - 89,162,583
singlet/doubletdoublet
Overlap geneAbcc12, Lonp2
Upstream geneGpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneSiah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J19.bB6Ng01-142J19.g
ACCDH940761DH940762
length1,1481,045
definitionDH940761|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J19, 5' end.DH940762|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,011,892 - 89,013,042)(89,161,514 - 89,162,583)
sequence
gaattcacactccattcaacttgagctgctgtgacagaattaaccctcct
gctttgagtctgttggaggaagtggtaccaaccccctcacacttcgatac
tgacaggaaaagatgctttagaaatgagtgattagtgggagagtcaacat
ctgagagaaatggaaggtggcaggggacctttcctcaaccagtcagctaa
agcaagactgattccaggcctgggaagtattcaagcgatgtagtaatgcc
tgcaatatttcaaaataggatggtttttgtagtgggaaaatttgaaatat
gctctgccgtcaaatcacaggcaattaataaaggtggttgaggatatgaa
gggagaaatcagccatgaaatactggctcaaacccacatttggattctag
acaccagcagcatatagcaccctctgaatttcaacatggtctgggagtct
ttgcctctagaaggacatggagagtgtttctggaatgccgcatggaattg
tcccaggaaacctctgtgatagtccatagcaggttcaaagaatcctttct
gggcacaccacatgtttgggcctccctttgtgtcacatcattttatatga
gacgggatgggatgtttctaaggaaaactcttctaaccttttctgttgtc
ctccccagtactgagcatctatgctggaatggcccctgcccctccaaggg
ggcgttgcatggcagacagttctttaaactcaaaacccagagaaaagagg
aggcaggggaaataaaagaagtcagagggaagagcttagaatgctgggga
agtgagaaaaatgaatgagagagagagaaaaaagggaatgttctggagtg
gctgacgtctatgtgctccttgtgtttgggaaaaatatacgtcaaagaca
accatgatgtccttgaaatgacttttgatgctgggttggattctctttgc
tcacctcacttaagggctgggtgctgaggatcagagatttaaaagctgca
taaacagaggtacacgcagacttctatctgtaagcagccctacccaccat
acgcagggtggctaacaacagtacaatggcctggtgacttcagcacaaac
ctgcctctgatggcttggtgccttctgtctcctttacttggcaaataa
gaattccaggacagccagggctacatagtgagatcctgtctcaaaagcca
aaccaaaccaaccgaaaatttgttaagaagggggctaggaagatgactcc
atagttaggagcactggctgcttttccagatgacccaggctcaaagccag
cacccacagggcttttcacaaccgtaattctagtctcagggtatctgtca
aagctcttttggcttccttggctactgcactcgtgtgatgcatagacata
catgaaggcaaacatctatacacataaaacacttttaaatgtggctaaaa
gcatttgttgcatggtttgaccacctctctctctccaactcagactctgt
ctctgtcatacacatgaatcagaaaaaaaacagtgaatgggagctgactt
tggggaacaatgggtataattacagtgcaggtgatgctgatgatgtcatg
aatgctattctgaatttcataaagacataatcatgtgtgcaactgccact
acatctcagaaaagtggtttaaagtacttaaaatcattgattgttgtttg
gtttttgagctagtttcccgacgtagagtgtaggaatgcaggcatgtact
gccatgtcctgagggaatgtgcacaatgaaatctgcatgagctttcccgt
gactgtgactgagaagcagatggcactgtgagctcaccagttgtactttt
gttccaaggaagctccaccataagttccaaataatttctagtcagagcat
attcaggcattgactgaggcatttttttgagtctgtggggaaaaaaatac
gtacccaataggttcaagagcacagtaattccacaataacagaaaaacca
agcatgtctccttaccatgcatacttttcaacatgataaaggctttaaag
agctgctgacagtgtttttccttttatgtacagaaataggtgctatagta
aactcagagttatctgatgtgcatcacatttctttacttgcttgaaagga
aaactgatgtcccgctcctagagttacttatcactgtagtactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89011892_89013042
seq2: B6Ng01-142J19.b_47_1194

seq1  GAATTCACACTCCATTCAACTTGAGCTGCTGTGACAGAATTAACCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCCATTCAACTTGAGCTGCTGTGACAGAATTAACCCTCCT  50

seq1  GCTTTGAGTCTGTTGGAGGAAGTGGTACCAACCCCCTCACACTTCGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGTCTGTTGGAGGAAGTGGTACCAACCCCCTCACACTTCGATAC  100

seq1  TGACAGGAAAAGATGCTTTAGAAATGAGTGATTAGTGGGAGAGTCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAAAGATGCTTTAGAAATGAGTGATTAGTGGGAGAGTCAACAT  150

seq1  CTGAGAGAAATGGAAGGTGGCAGGGGACCTTTCCTCAACCAGTCAGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAAATGGAAGGTGGCAGGGGACCTTTCCTCAACCAGTCAGCTAA  200

seq1  AGCAAGACTGATTCCAGGCCTGGGAAGTATTCAAGCGATGTAGTAATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACTGATTCCAGGCCTGGGAAGTATTCAAGCGATGTAGTAATGCC  250

seq1  TGCAATATTTCAAAATAGGATGGTTTTTGTAGTGGGAAAATTTGAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTTCAAAATAGGATGGTTTTTGTAGTGGGAAAATTTGAAATAT  300

seq1  GCTCTGCCGTCAAATCACAGGCAATTAATAAAGGTGGTTGAGGATATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCGTCAAATCACAGGCAATTAATAAAGGTGGTTGAGGATATGAA  350

seq1  GGGAGAAATCAGCCATGAAATACTGGCTCAAACCCACATTTGGATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAATCAGCCATGAAATACTGGCTCAAACCCACATTTGGATTCTAG  400

seq1  ACACCAGCAGCATATAGCACCCTCTGAATTTCAACATGGTCTGGGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCAGCATATAGCACCCTCTGAATTTCAACATGGTCTGGGAGTCT  450

seq1  TTGCCTCTAGAAGGACATGGAGAGTGTTTCTGGAATGCCGCATGGAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTAGAAGGACATGGAGAGTGTTTCTGGAATGCCGCATGGAATTG  500

seq1  TCCCAGGAAACCTCTGTGATAGTCCATAGCAGGTTCAAAGAATCCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAAACCTCTGTGATAGTCCATAGCAGGTTCAAAGAATCCTTTCT  550

seq1  GGGCACACCACATGTTTGGGCCTCCCTTTGTGTCACATCATTTTATATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACCACATGTTTGGGCCTCCCTTTGTGTCACATCATTTTATATGA  600

seq1  GACGGGATGGGATGTTTCTAAGGAAAACTCTTCTAACCTTTTCTGTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGATGGGATGTTTCTAAGGAAAACTCTTCTAACCTTTTCTGTTGTC  650

seq1  CTCCCCAGTACTGAGCATCTATGCTGGAATGGCCCCTGCCCCTCCAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGTACTGAGCATCTATGCTGGAATGGCCCCTGCCCCTCCAAGGG  700

seq1  GGCGTTGCATGGCAGACAGTTCTTTAAACTCAAAACCCAGAGAAAAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTGCATGGCAGACAGTTCTTTAAACTCAAAACCCAGAGAAAAGAGG  750

seq1  AGGCAGGGGAAATAAAAGAAGTCAGAGGGAAGAGCTTAGAATGCTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGAAATAAAAGAAGTCAGAGGGAAGAGCTTAGAATGCTGGGGA  800

seq1  AGTGAGAAAAATGAATGAGAGAGAGAGAAAAAAAGGAATGTTCTGGAGTG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTGAGAAAAATGAATGAGAGAGAGAGAAAAAAGGGAATGTTCTGGAGTG  850

seq1  GCTGAGGTCTATGTGCTCCTTGTGTTT-GGAAAAATATACGTCAAAGACA  899
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTGACGTCTATGTGCTCCTTGTGTTTGGGAAAAATATACGTCAAAGACA  900

seq1  ACCATGATGTCCTTGAAATGACTTTTGATGCTGGGTTGGATTCTCTTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGATGTCCTTGAAATGACTTTTGATGCTGGGTTGGATTCTCTTTGC  950

seq1  CTCCACCTCACCTTAGGGCTGGGTGCTGAGGATCAGAGATTTAAAAGCTG  999
         |||||||| | ||||||||||||||||||||||||||||||||||||
seq2  --TCACCTCACTTAAGGGCTGGGTGCTGAGGATCAGAGATTTAAAAGCTG  998

seq1  CATACACAGAGGTACACGCAGAC-TCTATCTGTAAGCAGCCCTACCCACA  1048
      |||| |||||||||||||||||| ||||||||||||||||||||||||| 
seq2  CATAAACAGAGGTACACGCAGACTTCTATCTGTAAGCAGCCCTACCCAC-  1047

seq1  CATACGCAGTGTGGCTAACAACAGTACAAATGGGCTGGTGACTTCCAGCA  1098
      ||||||||| ||||||||||||||||| ||||| |||||||||| |||||
seq2  CATACGCAGGGTGGCTAACAACAGTAC-AATGGCCTGGTGACTT-CAGCA  1095

seq1  ACAACCTGCTTCTGATGGCCTTTGTGCCTTCCTTGCTCC-TTAC-TGGCA  1146
        ||||||| |||||||| ||| ||||||| ||  |||| |||| |||||
seq2  CAAACCTGCCTCTGATGG-CTTGGTGCCTT-CTGTCTCCTTTACTTGGCA  1143

seq1  AATAA  1151
      |||||
seq2  AATAA  1148

seq1: chr8_89161514_89162583
seq2: B6Ng01-142J19.g_68_1112 (reverse)

seq1  CCAGTACTACAGTGGAATAAGTTAACTCTGAGGGAGCGGGGACATTCAGT  50
      ||||||||||||||  ||||| |||||||   ||||| |||||| |||||
seq2  CCAGTACTACAGTG--ATAAG-TAACTCT--AGGAGC-GGGACA-TCAGT  43

seq1  TTTTCCTTATACAAGCAAAGTAAAGGAAATGGTTGGATTGCACATTCAGG  100
      ||| | ||   ||||| ||||||| ||||||  ||   |||||| ||| |
seq2  TTTCCTTT---CAAGC-AAGTAAA-GAAATG--TG--ATGCACA-TCA-G  82

seq1  ATAACCTCTGAGTTTACTATAGCACCTATTTTCTGTACATAAAAGGAAAA  150
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAA-CTCTGAGTTTACTATAGCACCTA-TTTCTGTACATAAAAGGAAAA  130

seq1  ACAACTTGTCAGCCAGCTCTTTAAAGCCTTTATTCATGTTTGAAAAGTAT  200
      |||   |||||| ||||||||||||||||||| ||||| |||||||||||
seq2  ACA--CTGTCAG-CAGCTCTTTAAAGCCTTTA-TCATG-TTGAAAAGTAT  175

seq1  GCATGGTAAGGAGACATGCTTGGTTTTTCTGTTATTGTGGAATTACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTAAGGAGACATGCTTGGTTTTTCTGTTATTGTGGAATTACTGTG  225

seq1  CTCTTGAACCTATTGGGTACGTATTTTTTTCCCCACAGACTCAAAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAACCTATTGGGTACGTATTTTTTTCCCCACAGACTCAAAAAAAT  275

seq1  GCCTCAGTCAATGCCTGAATATGCTCTGACTAGAAATTATTTGGAACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTCAATGCCTGAATATGCTCTGACTAGAAATTATTTGGAACTTA  325

seq1  TGGTGGAGCTTCCTTGGAACAAAAGTACAACTGGTGAGCTCACAGTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGCTTCCTTGGAACAAAAGTACAACTGGTGAGCTCACAGTGCCA  375

seq1  TCTGCTTCTCAGTCACAGTCACGGGAAAGCTCATGCAGATTTCATTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTCAGTCACAGTCACGGGAAAGCTCATGCAGATTTCATTGTGC  425

seq1  ACATTCCCTCAGGACATGGCAGTACATGCCTGCATTCCTACACTCTACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCTCAGGACATGGCAGTACATGCCTGCATTCCTACACTCTACGT  475

seq1  CGGGAAACTAGCTCAAAAACCAAACAACAATCAATGATTTTAAGTACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAACTAGCTCAAAAACCAAACAACAATCAATGATTTTAAGTACTTT  525

seq1  AAACCACTTTTCTGAGATGTAGTGGCAGTTGCACACATGATTATGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTTTTCTGAGATGTAGTGGCAGTTGCACACATGATTATGTCTTT  575

seq1  ATGAAATTCAGAATAGCATTCATGACATCATCAGCATCACCTGCACTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCAGAATAGCATTCATGACATCATCAGCATCACCTGCACTGTA  625

seq1  ATTATACCCATTGTTCCCCAAAGTCAGCTCCCATTCACTGTTTTTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCCATTGTTCCCCAAAGTCAGCTCCCATTCACTGTTTTTTTTCT  675

seq1  GATTCATGTGTATGACAGAGACAGAGTCTGAGTTGGAGAGAGAGAGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATGTGTATGACAGAGACAGAGTCTGAGTTGGAGAGAGAGAGGTGG  725

seq1  TCAAACCATGCAACAAATGCTTTTAGCCACATTTAAAAGTGTTTTATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCATGCAACAAATGCTTTTAGCCACATTTAAAAGTGTTTTATGTG  775

seq1  TATAGATGTTTGCCTTCATGTATGTCTATGCATCACACGAGTGCAGTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGTTTGCCTTCATGTATGTCTATGCATCACACGAGTGCAGTAGC  825

seq1  CAAGGAAGCCAAAAGAGCTTTGACAGATACCCTGAGACTAGAATTACGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGCCAAAAGAGCTTTGACAGATACCCTGAGACTAGAATTACGGT  875

seq1  TGTGAAAAGCCCTGTGGGTGCTGGCTTTGAGCCTGGGTCATCTGGAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGCCCTGTGGGTGCTGGCTTTGAGCCTGGGTCATCTGGAAAAG  925

seq1  CAGCCAGTGCTCCTAACTATGGAGTCATCTTCCTAGCCCCCTTCTTAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGCTCCTAACTATGGAGTCATCTTCCTAGCCCCCTTCTTAACA  975

seq1  AATTTTCGGTTGGTTTGGTTTGGCTTTTGAGACAGGATCTCACTATGTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCGGTTGGTTTGGTTTGGCTTTTGAGACAGGATCTCACTATGTAG  1025

seq1  CCCTGGCTGTCCTGGAATTC  1070
      ||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAATTC  1045