BAC Information

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BAC

Clone NameB6Ng01-142N09
Chromosome8 (Build37)
Map Location 63,986,516 - 64,141,761
singlet/doubletdoublet
Overlap genePalld, LOC100040872
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4
Downstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142N09.bB6Ng01-142N09.g
ACCDH940932DH940933
length1,2051,143
definitionDH940932|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N09, 5' end.DH940933|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,986,516 - 63,987,752)(64,140,612 - 64,141,761)
sequence
gaattcttaaacagaagacttatttatgactgccaccctcataacagctc
atggtccagccatggttagcgtttgaaagaaaaggtcgggggctgaagcc
agagtactcagcttttatgctcaggttttaaaatatgtgctctttttata
tttttattcatattcaatttaggaggggctgtgccagcgttttacagata
tgattatatgttgcaaattaggggggaataatttatgcagagaagcagag
ctgatttacatgcatctattacccagaataatggaagaagacagaagatt
aatttggttcaagaattgatacctagtattatgggaactgttgtagagat
ttttaatcccaatccaggtttctaccccatctttgaccatttagtttcca
gataaaagacacataacctttatatttacaatacgtcttagcactagggc
tgggcagacatctaccctctatgctattaaaatctacttcctattgataa
ccccaagttattacatactatgttttatctggctgctcttaactccagtt
ggccagccatcggggccatgctttcttgactcctaactcatggtgacttg
tcctcctcacctctctgtctctctcctcgtttccctccacacacacacac
accccaaacctgagaaccctaaaactggcctgtgcctcttctgcccagct
attggctgtcagcatctttatttaccaatcagaaaaacgactaacttact
gcctatgttttaccaagcctgcccggtaccaattgacaaggccccagtga
attgaggagaggatgttggggcaaggagaaagatttattcagcaaagaag
acagactttggatccccaaaggccatctcaaccctactgctaaccacctt
ttttttttttttaatataatgattttatttgttccttgtgaatatttaat
catatctttcccttcccccactccttccagatactcatccacctccctac
ccacagactcatgtctcccttccataagacaaacagacaacgaaccccca
cacccaccacaacaaaaccatggagcccagttgtgtcgcatggctctccc
tgagcatgagcatgcatgcattcagtggatgtctagaataccttatcaag
aaactgaattgggttccagaaagccacaatagatgctcttggctaggatg
acttt
gaattccaagcagggaaggaatctgaccacgctttcattttaaaaccaca
atacctttgtgactccccctcaagtttcaaggccatttcactttgcattt
tgcattgatttgtggtcagaaactgttttgaagaaagaacttaaaacttg
ttattagttggggtttggaatggattaagcttcaagtcattttctggaac
caagatgtcattcaaacacaggaaaacacacatacacaaacacttaagct
gggcatggcgacttatacttgagatactagcactggggaaaccaaggcag
gattacgacaaattccaggtgagcttggactaagccatgagttccaggtc
aggctgaacaacagtctatcatcctttctcaaaaacaatatgaacaaaca
aaaatcacttgattatggattaggggtaaggagttgaagaatgcatgatg
gcctgaggagtgtccatagatggcagagtacacactgtcatgaagtgtgg
cagctgtcaccagcagccatttaagttttgtgtgtttaatttttttctct
ctacttttccttcactgctgccttatccagctctaagttgggatatctca
tttccaagcattcccacagcattcaaagtgatcttcctgcctcttccagc
cgatctttctgaaacccacgtccccaccttcactgatggtcagcaaattg
ctgtgatcgccaatgcttcatttctgttttcctcttatttttttctgttt
gaataattgcatacacacttccattgcattgttatcaaatccatccaccc
ctctcttccagctcctccctgacgccctcatcactttccctcttagctcc
atgtagttgctcttttaaaacctaccaagtctacttagtgattcctatgc
atacattgtgtgaaacttctagtggagcatgggtagcctttcggagtata
tcccctaaaaacaaaataaaaccaaaaatactcgccactccccacctcca
gcagccatcagtttccagtacttctcagcacgaggtagaactacttagcc
actccctaagataacaggttggcctggctctgtgtgcagatctgacatat
atggccagcctgtctgttcacgggtaccacagcctcgtcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63986516_63987752
seq2: B6Ng01-142N09.b_46_1250

seq1  GAATTCTTAAACAGAAGACTTATTTATGACTGCCACCCTCATAACAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAACAGAAGACTTATTTATGACTGCCACCCTCATAACAGCTC  50

seq1  ATGGTCCAGCCATGGTTAGCGTTTGAAAGAAAAGGTCGGGGGCTGAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCAGCCATGGTTAGCGTTTGAAAGAAAAGGTCGGGGGCTGAAGCC  100

seq1  AGAGTACTCAGCTTTTATGCTCAGGTTTTAAAATATGTGCTCTTTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTCAGCTTTTATGCTCAGGTTTTAAAATATGTGCTCTTTTTATA  150

seq1  TTTTTATTCATATTCAATTTAGGAGGGGCTGTGCCAGCGTTTTACAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCATATTCAATTTAGGAGGGGCTGTGCCAGCGTTTTACAGATA  200

seq1  TGATTATATGTTGCAAATTAGGGGGGAATAATTTATGCAGAGAAGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATATGTTGCAAATTAGGGGGGAATAATTTATGCAGAGAAGCAGAG  250

seq1  CTGATTTACATGCATCTATTACCCAGAATAATGGAAGAAGACAGAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTACATGCATCTATTACCCAGAATAATGGAAGAAGACAGAAGATT  300

seq1  AATTTGGTTCAAGAATTGATACCTAGTATTATGGGAACTGTTGTAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTTCAAGAATTGATACCTAGTATTATGGGAACTGTTGTAGAGAT  350

seq1  TTTTAATCCCAATCCAGGTTTCTACCCCATCTTTGACCATTTAGTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCCAATCCAGGTTTCTACCCCATCTTTGACCATTTAGTTTCCA  400

seq1  GATAAAAGACACATAACCTTTATATTTACAATACGTCTTAGCACTAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGACACATAACCTTTATATTTACAATACGTCTTAGCACTAGGGC  450

seq1  TGGGCAGACATCTACCCTCTATGCTATTAAAATCTACTTCCTATTGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGACATCTACCCTCTATGCTATTAAAATCTACTTCCTATTGATAA  500

seq1  CCCCAAGTTATTACATACTATGTTTTATCTGGCTGCTCTTAACTCCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTTATTACATACTATGTTTTATCTGGCTGCTCTTAACTCCAGTT  550

seq1  GGCCAGCCATCGGGGCCATGCTTTCTTGACTCCTAACTCATGGTGACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCATCGGGGCCATGCTTTCTTGACTCCTAACTCATGGTGACTTG  600

seq1  TCCTCCTCACCTCTCTGTCTCTCTCCTCGTTTCCCTCCACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCACCTCTCTGTCTCTCTCCTCGTTTCCCTCCACACACACACAC  650

seq1  ACCCCAAACCTGAGAACCCTAAAACTGGCCTGTGCCTCTTCTGCCCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACCTGAGAACCCTAAAACTGGCCTGTGCCTCTTCTGCCCAGCT  700

seq1  ATTGGCTGTCAGCATCTTTATTTACCAATCAGAAAAACGACTAACTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGTCAGCATCTTTATTTACCAATCAGAAAAACGACTAACTTACT  750

seq1  GCCTATGTTTTACCAAGCCTGCCCGGTACCAATTGACAAGGCCCCAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGTTTTACCAAGCCTGCCCGGTACCAATTGACAAGGCCCCAGTGA  800

seq1  ATTGAGGAGAGGATGTTGGGGCAAGGAGAAAGATTTATTCAGCAAAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGAGAGGATGTTGGGGCAAGGAGAAAGATTTATTCAGCAAAGAAG  850

seq1  ACAAGACTTTGGATCCCCAAAGGCCATCTCAACCCTACTGCTAACCACCT  900
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AC-AGACTTTGGATCCCCAAAGGCCATCTCAACCCTACTGCTAACCACC-  898

seq1  TTTTTTTTTTTTTTAATATAATGATTTTATTTGTTCCTTGTGAATATTTT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTTTTTTTTTTTAATATAATGATTTTATTTGTTCCTTGTGAATA-TTT  947

seq1  AATCATATTCTTTCCCTTCCCCCAACTCCTTCCAGATACTCATCCACCTC  1000
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  AATCATA-TCTTTCCCTTCCCCC-ACTCCTTCCAGATACTCATCCACCTC  995

seq1  CCTACCCACAGAACTTCATGTTCTTTCCCTTCCATAAGACAAACAGACAA  1050
      ||||||||||||   |||||   | ||||||||||||||||||||||| |
seq2  CCTACCCACAGA--CTCATG---TCTCCCTTCCATAAGACAAACAGAC-A  1039

seq1  ACGAACCCCCACA-CCACCACCAACAAAAACACATGGAGCCCAGTTTGTG  1099
      ||||||||||||| |||||| ||||||||   |||||||||||| |||||
seq2  ACGAACCCCCACACCCACCA-CAACAAAA--CCATGGAGCCCAG-TTGTG  1085

seq1  TCGCATGGCTACTCCTGAGCATTGAGCATGCCATGCCATTCAGTTTGTAT  1149
      ||||||||||   |||||||| |||||||| |||| |||||||  || ||
seq2  TCGCATGGCTCTCCCTGAGCA-TGAGCATG-CATG-CATTCAG--TGGAT  1130

seq1  GTCTAGTATTACTTTATCAAAGAAAACTGATTTTTGTTTCCCAG-AAGCT  1198
      |||||| | ||| |||||||   ||||||| ||  |||  |||| |||| 
seq2  GTCTAG-AATACCTTATCAA--GAAACTGAATTGGGTT--CCAGAAAGCC  1175

seq1  ATCAATTATGAATAGCTTCTTGGCTAGGGATTGGACTTT  1237
      | ||||     | |   ||||||||| ||||  ||||||
seq2  A-CAAT-----AGATGCTCTTGGCTA-GGAT--GACTTT  1205

seq1: chr8_64140612_64141761
seq2: B6Ng01-142N09.g_66_1208 (reverse)

seq1  ACATGACAGAGCTGTTGTACACGTGAACAG-CAGCTGTGACTATATATGT  49
      |||||||   ||||| |||| ||||||||| |||   || | ||||||||
seq2  ACATGACGAGGCTGTGGTACCCGTGAACAGACAG-GCTGGCCATATATGT  49

seq1  CAGATCTGCACA-AGAG-CAAGCCAACC-GTAATCCTAGGGGAGTGGCTT  96
      |||||||||||| |||| || ||||||| || ||| || ||||||||| |
seq2  CAGATCTGCACACAGAGCCAGGCCAACCTGTTATCTTA-GGGAGTGGC-T  97

seq1  ATGTAAGTCCTACCTCGTGCTGAGAAGTTACTGGAAACTGATGGCTGCTG  146
      | || ||| |||||||||||||||||| ||||||||||||||||||||||
seq2  AAGT-AGTTCTACCTCGTGCTGAGAAG-TACTGGAAACTGATGGCTGCTG  145

seq1  GA-GTGGGGAGT-GCGAGTAATTTTTTTGTTTTATTTTGTTTTTAGGTGA  194
      || ||||||||| |||||||  ||||| ||||||||||||||||||| ||
seq2  GAGGTGGGGAGTGGCGAGTA--TTTTTGGTTTTATTTTGTTTTTAGGGGA  193

seq1  TATACCTCCCGAAAGGCTACCCATGCTCCACTAGAAGTTTCCACACCAAT  244
      |||||   |||||||||||||||||||||||||||||||| |||| ||||
seq2  TATAC--TCCGAAAGGCTACCCATGCTCCACTAGAAGTTT-CACA-CAAT  239

seq1  GTATGCATAGGAATCACTAAGTAGACTTGGTAGGTTTTTAAAAAGAGCAA  294
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  GTATGCATAGGAATCACTAAGTAGACTTGGTAGGTTTT--AAAAGAGCAA  287

seq1  CTACATGGAGCTAAGAGGGAAAGTGATGAGGGCGTCAGGGAGGAGCTGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGAGCTAAGAGGGAAAGTGATGAGGGCGTCAGGGAGGAGCTGGA  337

seq1  AGAGAGGGGTGGATGGATTTGATAACAATGCAATGGAAGTGTGTATGCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGGTGGATGGATTTGATAACAATGCAATGGAAGTGTGTATGCAA  387

seq1  TTATTCAAACAGAAAAAAATAAGAGGAAAACAGAAATGAAGCATTGGCGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAACAGAAAAAAATAAGAGGAAAACAGAAATGAAGCATTGGCGA  437

seq1  TCACAGCAATTTGCTGACCATCAGTGAAGGTGGGGACGTGGGTTTCAGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAATTTGCTGACCATCAGTGAAGGTGGGGACGTGGGTTTCAGAA  487

seq1  AGATCGGCTGGAAGAGGCAGGAAGATCACTTTGAATGCTGTGGGAATGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGGCTGGAAGAGGCAGGAAGATCACTTTGAATGCTGTGGGAATGCT  537

seq1  TGGAAATGAGATATCCCAACTTAGAGCTGGATAAGGCAGCAGTGAAGGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGAGATATCCCAACTTAGAGCTGGATAAGGCAGCAGTGAAGGAA  587

seq1  AAGTAGAGAGAAAAAAATTAAACACACAAAACTTAAATGGCTGCTGGTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGAGAAAAAAATTAAACACACAAAACTTAAATGGCTGCTGGTGA  637

seq1  CAGCTGCCACACTTCATGACAGTGTGTACTCTGCCATCTATGGACACTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCACACTTCATGACAGTGTGTACTCTGCCATCTATGGACACTCC  687

seq1  TCAGGCCATCATGCATTCTTCAACTCCTTACCCCTAATCCATAATCAAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCATCATGCATTCTTCAACTCCTTACCCCTAATCCATAATCAAGT  737

seq1  GATTTTTGTTTGTTCATATTGTTTTTGAGAAAGGATGATAGACTGTTGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTTTGTTCATATTGTTTTTGAGAAAGGATGATAGACTGTTGTT  787

seq1  CAGCCTGACCTGGAACTCATGGCTTAGTCCAAGCTCACCTGGAATTTGTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGACCTGGAACTCATGGCTTAGTCCAAGCTCACCTGGAATTTGTC  837

seq1  GTAATCCTGCCTTGGTTTCCCCAGTGCTAGTATCTCAAGTATAAGTCGCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCTGCCTTGGTTTCCCCAGTGCTAGTATCTCAAGTATAAGTCGCC  887

seq1  ATGCCCAGCTTAAGTGTTTGTGTATGTGTGTTTTCCTGTGTTTGAATGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGCTTAAGTGTTTGTGTATGTGTGTTTTCCTGTGTTTGAATGAC  937

seq1  ATCTTGGTTCCAGAAAATGACTTGAAGCTTAATCCATTCCAAACCCCAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTTCCAGAAAATGACTTGAAGCTTAATCCATTCCAAACCCCAAC  987

seq1  TAATAACAAGTTTTAAGTTCTTTCTTCAAAACAGTTTCTGACCACAAATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAAGTTTTAAGTTCTTTCTTCAAAACAGTTTCTGACCACAAATC  1037

seq1  AATGCAAAATGCAAAGTGAAATGGCCTTGAAACTTGAGGGGGAGTCACAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAATGCAAAGTGAAATGGCCTTGAAACTTGAGGGGGAGTCACAA  1087

seq1  AGGTATTGTGGTTTTAAAATGAAAGCGTGGTCAGATTCCTTCCCTGCTTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTGTGGTTTTAAAATGAAAGCGTGGTCAGATTCCTTCCCTGCTTG  1137

seq1  GAATTC  1150
      ||||||
seq2  GAATTC  1143