BAC Information

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BAC

Clone NameB6Ng01-143O03
Chromosome8 (Build37)
Map Location 89,394,983 - 89,496,833
singlet/doubletdoublet
Overlap geneBC004022, LOC666960
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178
Downstream geneEG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143O03.bB6Ng01-143O03.g
ACCDH941705DH941706
length1,0331,203
definitionDH941705|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O03, 5' end.DH941706|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,495,783 - 89,496,833)(89,394,983 - 89,396,204)
sequence
gaattcaactcacgcagagctggggaccacaaaaggctggacagtagctc
aagcagcgaggacaggccccactcgctggttcagaagagtatcagtgtct
ccaatccggcaaaagcctaaagccaccatccaacctgagagctggtctga
accacccaatttgaagtagagtctggtgggtaaacagaaagagggaaggt
gcccagtaaggcccctccttcctgccctgcatgtccttccttccctgtcc
tgtatgcctatccttggcattagtttctgctctttgccaggcaggtgaca
actctgccagcagctctggaccaaggttaaagacagtgctggttgctttc
attgcctaggacacctctgtgcctcatcctccaagaaatccattagagga
ggtgtgtgacaaggtccttgccacctgcaaacagccatttttctctagaa
gttaattagagtagacctctgccctgtgtgctcacaggccccaggatatt
tatcatagaaggaaaggctctagaggctcttaccccaccctccaggatcc
acgattccttaagggttttgcctccaaggatttgtttcaattgtattctg
cattcccgttttgtttgaccacaaggggcacctgtaagaacccaagccaa
ggacttgtcctcccctgtaaaaatgagcaagagcagagaggacaagaatt
cctaccatcacccacccagctaaagtttgtctccccagtcctttcttcaa
cattctctccactacacctcaaagctttcttatgaatataaaataacagg
tgaaagttatactctatttcttcagaacttagttaaaatcaaggaaatac
tgtcattgcataataacgtatcctccatttttcagctaggaaacagttca
gtgagagggacttgttgtagtctgcgtcagcctctggactcacactgtag
cagcgcatgatgggtgtccacccatagcccagtgcagcctcagcagaaca
gcatgactcagtagcacacagtgagactgcatt
gaattcacgctcactcccactcagcttgctttctcttttcacagtacagg
acccaacccaggaaactgctacctaccacacagttctaggctggattttc
ttacaccaacaaatgaaattaagtcagcttccccacagaccaacctgatg
cacacgatgcctcactgggcttctcttaccaactgattctagactgtgtc
aacgctgacaatgaaaacgatccaccacaaatccttcctcggtacagaaa
aaaaaattcacattttctaacacatataaaatgatactaaatccatgcaa
caggaatcaggatgtcaaaagaaaggaaataaaggaaatcagagtgaaga
gtgctagtaagataagaatatgaagcgaagcatggtgccctaaggctaga
atttcaccactaagaagactggagcaggaggaatggcctaagtttaaggc
cagcctcaggtacagaatgagatccagtctcaaaaaacaccaaatcaatt
ttttaaaaaaaggagaagtggaagtgaaggagggctggagagatggctca
gtggttaagagcatgtcctgctcttgcagaaggcccagggttggttccca
gcacccatgctgagagactcacaaccaccatcttaattccagttccaggg
gtccggacaccagggttaaaggcaaatagctgacatgcccagcctctcct
aattattttaagtttcaaatatactttatttacataaatcaaagaatcag
aaacgcatctcaagaacaattaacaagttgggcatagtgaggctggcctt
tagttcagcactcggggaggcacaggcagtggagctcagacccagcctgg
tttacacagcaagtgtcaagccagccagggctacagtgagagcctgtctc
aaaaagaaaaaaaggcataaaaaaagatgagacaagggtctttataggta
gatttcctcaccatgatcagcaaacaaatttaacatttccagaaaaaaag
aattcggagaaacatgcagaaacagtcaaattatatttaactgtaattgc
taaagcatggaaagaacttgctttgttcattccttggttcatcccactgt
acattggagcacaagccatggtccggaacctatgaagcaaaggaagtggg
ttcctgttccggaacatgtctagacaagggacaagtggtaagaacacgaa
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89495783_89496833
seq2: B6Ng01-143O03.b_46_1078 (reverse)

seq1  AATGCAGGTTCCTCACTGTGTGCTACTTGAAGGTCATGGCTGTTCCTGCT  50
      |||||||    ||||||||||||||| |||  ||||| |||||| |||||
seq2  AATGCAG---TCTCACTGTGTGCTAC-TGA--GTCAT-GCTGTT-CTGCT  42

seq1  GAGGGCTGCACTTGGGCTATGGGTGGACCACCCCATCAATGCCGCTGCTA  100
      || |||||||| ||||||||||||||||   |||||| ||| ||||||||
seq2  GA-GGCTGCAC-TGGGCTATGGGTGGAC--ACCCATC-ATG-CGCTGCTA  86

seq1  CAGTTGTGAGTTCCAGAGGCTGACGCAGACTACAACAAGTCCCTTCTCAC  150
      ||| |||||| |||||||||||||||||||||||||||||||| ||||||
seq2  CAG-TGTGAG-TCCAGAGGCTGACGCAGACTACAACAAGTCCC-TCTCAC  133

seq1  TGAACTTGTTTCCTAGCTGAAAAATGGAGGATACGTTATTATGCAATGAC  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAC-TGTTTCCTAGCTGAAAAATGGAGGATACGTTATTATGCAATGAC  182

seq1  AGTATTTCCTTGATTTTAACTAAGTTCTGAAGAAATAGAGTATAACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCCTTGATTTTAACTAAGTTCTGAAGAAATAGAGTATAACTTTC  232

seq1  ACCTGTTATTTTATATTCATAAGAAAGCTTTGAGGTGTAGTGGAGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTATTTTATATTCATAAGAAAGCTTTGAGGTGTAGTGGAGAGAAT  282

seq1  GTTGAAGAAAGGACTGGGGAGACAAACTTTAGCTGGGTGGGTGATGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGAAAGGACTGGGGAGACAAACTTTAGCTGGGTGGGTGATGGTAG  332

seq1  GAATTCTTGTCCTCTCTGCTCTTGCTCATTTTTACAGGGGAGGACAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCCTCTCTGCTCTTGCTCATTTTTACAGGGGAGGACAAGTC  382

seq1  CTTGGCTTGGGTTCTTACAGGTGCCCCTTGTGGTCAAACAAAACGGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTGGGTTCTTACAGGTGCCCCTTGTGGTCAAACAAAACGGGAAT  432

seq1  GCAGAATACAATTGAAACAAATCCTTGGAGGCAAAACCCTTAAGGAATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATACAATTGAAACAAATCCTTGGAGGCAAAACCCTTAAGGAATCG  482

seq1  TGGATCCTGGAGGGTGGGGTAAGAGCCTCTAGAGCCTTTCCTTCTATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTGGAGGGTGGGGTAAGAGCCTCTAGAGCCTTTCCTTCTATGAT  532

seq1  AAATATCCTGGGGCCTGTGAGCACACAGGGCAGAGGTCTACTCTAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCTGGGGCCTGTGAGCACACAGGGCAGAGGTCTACTCTAATTAA  582

seq1  CTTCTAGAGAAAAATGGCTGTTTGCAGGTGGCAAGGACCTTGTCACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAGAAAAATGGCTGTTTGCAGGTGGCAAGGACCTTGTCACACAC  632

seq1  CTCCTCTAATGGATTTCTTGGAGGATGAGGCACAGAGGTGTCCTAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTAATGGATTTCTTGGAGGATGAGGCACAGAGGTGTCCTAGGCAA  682

seq1  TGAAAGCAACCAGCACTGTCTTTAACCTTGGTCCAGAGCTGCTGGCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAACCAGCACTGTCTTTAACCTTGGTCCAGAGCTGCTGGCAGAG  732

seq1  TTGTCACCTGCCTGGCAAAGAGCAGAAACTAATGCCAAGGATAGGCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCTGCCTGGCAAAGAGCAGAAACTAATGCCAAGGATAGGCATAC  782

seq1  AGGACAGGGAAGGAAGGACATGCAGGGCAGGAAGGAGGGGCCTTACTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGGAAGGAAGGACATGCAGGGCAGGAAGGAGGGGCCTTACTGGG  832

seq1  CACCTTCCCTCTTTCTGTTTACCCACCAGACTCTACTTCAAATTGGGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCCTCTTTCTGTTTACCCACCAGACTCTACTTCAAATTGGGTGG  882

seq1  TTCAGACCAGCTCTCAGGTTGGATGGTGGCTTTAGGCTTTTGCCGGATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCAGCTCTCAGGTTGGATGGTGGCTTTAGGCTTTTGCCGGATTG  932

seq1  GAGACACTGATACTCTTCTGAACCAGCGAGTGGGGCCTGTCCTCGCTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTGATACTCTTCTGAACCAGCGAGTGGGGCCTGTCCTCGCTGCT  982

seq1  TGAGCTACTGTCCAGCCTTTTGTGGTCCCCAGCTCTGCGTGAGTTGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACTGTCCAGCCTTTTGTGGTCCCCAGCTCTGCGTGAGTTGAATT  1032

seq1  C  1051
      |
seq2  C  1033

seq1: chr8_89394983_89396204
seq2: B6Ng01-143O03.g_71_1273

seq1  GAATTCACGCTCACTCCCACTCAGCTTGCTTTCTCTTTTCACAGTACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCTCACTCCCACTCAGCTTGCTTTCTCTTTTCACAGTACAGG  50

seq1  ACCCAACCCAGGAAACTGCTACCTACCACACAGTTCTAGGCTGGATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCCAGGAAACTGCTACCTACCACACAGTTCTAGGCTGGATTTTC  100

seq1  TTACACCAACAAATGAAATTAAGTCAGCTTCCCCACAGACCAACCTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAACAAATGAAATTAAGTCAGCTTCCCCACAGACCAACCTGATG  150

seq1  CACACGATGCCTCACTGGGCTTCTCTTACCAACTGATTCTAGACTGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGATGCCTCACTGGGCTTCTCTTACCAACTGATTCTAGACTGTGTC  200

seq1  AACGCTGACAATGAAAACGATCCACCACAAATCCTTCCTCGGTACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGACAATGAAAACGATCCACCACAAATCCTTCCTCGGTACAGAAA  250

seq1  AAAAAATTCACATTTTCTAACACATATAAAATGATACTAAATCCATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCACATTTTCTAACACATATAAAATGATACTAAATCCATGCAA  300

seq1  CAGGAATCAGGATGTCAAAAGAAAGGAAATAAAGGAAATCAGAGTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCAGGATGTCAAAAGAAAGGAAATAAAGGAAATCAGAGTGAAGA  350

seq1  GTGCTAGTAAGATAAGAATATGAAGCGAAGCATGGTGCCCTAAGGCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGTAAGATAAGAATATGAAGCGAAGCATGGTGCCCTAAGGCTAGA  400

seq1  ATTTCACCACTAAGAAGACTGGAGCAGGAGGAATGGCCTAAGTTTAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCACTAAGAAGACTGGAGCAGGAGGAATGGCCTAAGTTTAAGGC  450

seq1  CAGCCTCAGGTACAGAATGAGATCCAGTCTCAAAAAACACCAAATCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGGTACAGAATGAGATCCAGTCTCAAAAAACACCAAATCAATT  500

seq1  TTTTAAAAAAAGGAGAAGTGGAAGTGAAGGAGGGCTGGAGAGATGGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAAGGAGAAGTGGAAGTGAAGGAGGGCTGGAGAGATGGCTCA  550

seq1  GTGGTTAAGAGCATGTCCTGCTCTTGCAGAAGGCCCAGGGTTGGTTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGAGCATGTCCTGCTCTTGCAGAAGGCCCAGGGTTGGTTCCCA  600

seq1  GCACCCATGCTGAGAGACTCACAACCACCATCTTAATTCCAGTTCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATGCTGAGAGACTCACAACCACCATCTTAATTCCAGTTCCAGGG  650

seq1  GTCCGGACACCAGGGTTAAAGGCAAATAGCTGACATGCCCAGCCTCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGACACCAGGGTTAAAGGCAAATAGCTGACATGCCCAGCCTCTCCT  700

seq1  AATTATTTTAAGTTTCAAATATACTTTATTTACATAAATCAAAGAATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTAAGTTTCAAATATACTTTATTTACATAAATCAAAGAATCAG  750

seq1  AAACGCATCTCAAGAACAATTAACAAGTTGGGCATAGTGAGGCTGGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCATCTCAAGAACAATTAACAAGTTGGGCATAGTGAGGCTGGCCTT  800

seq1  TAGTTCCAGCACTC-GGGAGGCACAGGCAGTGGAGCTCAGACCCAGCCTG  849
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGTT-CAGCACTCGGGGAGGCACAGGCAGTGGAGCTCAGACCCAGCCTG  849

seq1  GTCTACACAGCAAGTGTCAAGCCAGCCAGGGCTACAGTGAGAGCCTGTCT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACACAGCAAGTGTCAAGCCAGCCAGGGCTACAGTGAGAGCCTGTCT  899

seq1  CAAAAAGGAAAAAAAGGCAATAAAAAAGATGAAGACAAGGGTCTTTTATA  949
      |||||| ||||||||||||  |||||||||| ||||||||||| ||||||
seq2  CAAAAA-GAAAAAAAGGCATAAAAAAAGATG-AGACAAGGGTC-TTTATA  946

seq1  GGTAGATTTCCTCACCATGATCAGCAAACAAATTTAACATATTCCAGAAA  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTAGATTTCCTCACCATGATCAGCAAACAAATTTAACAT-TTCCAGAAA  995

seq1  AAAAGAATTTGGAGAAACATGCAGAAACAGTCCAGATTATA-TTAACTGT  1048
      ||||||||| ||||||||||||||||||||| || |||||| ||||||||
seq2  AAAAGAATTCGGAGAAACATGCAGAAACAGT-CAAATTATATTTAACTGT  1044

seq1  AATTTTGCTTAAAGCAT-GAAAGAACTTGCTTTGTTCATTCACTTGTTCA  1097
      ||  |||| |||||||| |||||||||||||||||||||||  | |||||
seq2  AA--TTGC-TAAAGCATGGAAAGAACTTGCTTTGTTCATTCCTTGGTTCA  1091

seq1  T-CCACTGTACATTGAGGCACCAAGCATGTGCCGGGAACTAGTGAAGCAA  1146
      | |||||||||||||  |||| |  ||||  |||| | ||| ||||||||
seq2  TCCCACTGTACATTGGAGCACAAGCCATGGTCCGGAACCTA-TGAAGCAA  1140

seq1  AAGGTGAAAGTGGGTTCCTGTTTTTCTAGAGACCATGTCTTAGCAAAGTG  1196
      |    | ||||||||||||||     |   || |||||||   |||   |
seq2  A----GGAAGTGGGTTCCTGT-----TCCGGAACATGTCTAGACAA---G  1178

seq1  GGTCAAGTGGTAAGAACACAGAAATG  1222
      || |||||||||||||||| ||||||
seq2  GGACAAGTGGTAAGAACAC-GAAATG  1203