BAC Information

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BAC

Clone NameB6Ng01-144D07
Chromosome8 (Build37)
Map Location 125,438,114 - 125,608,404
singlet/doubletdoublet
Overlap geneAnkrd11, Spg7
Upstream geneBC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15
Downstream geneRpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144D07.bB6Ng01-144D07.g
ACCDH941944DH941945
length1,1651,036
definitionDH941944|Mus musculus domesticus DNA, BAC clone: B6Ng01-144D07, 5' end.DH941945|Mus musculus domesticus DNA, BAC clone: B6Ng01-144D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,438,114 - 125,439,303)(125,607,367 - 125,608,404)
sequence
gaattctttaacagacaagagcagcagtcagccaggatggagagcatcta
taaaccgaagactcagaaggcagtgaggaaaactcagggaagggaggggg
agacttggatagttaagtgcaaggtgctccacactgtcacacagctgagg
tgaagagtaggcaggagctgcactaagacaggaatggctgagtctgagca
aggctccaacacaaggcagtgggagtagggtgcttctctgacctgaatgc
ccacagactcagcagtatgtgatgtttctgaagccagcctagtgagagtc
ttttttaaaaagtctaggaaacgacagtgcagcctttccccttgttcctg
ctctacaactatctgactttgttgcatggaaacttctatgaatatacctg
aaaaccatgcctttgcatctattcggtgtgaaactgtccccaaaagtaag
ttcatgctacatggatactcaagggtcccagaggcccctttatctgttct
ttttaaacagcagctacatatgtcatgttcacaaaccacttcacagtgaa
ccgaatgagcagatcatgtgactctgcagtgtctgcctgtataccacagc
acttgctagtgattacagggggagtattagcaacatgcagaaagaatcaa
aatgaaggctcacttacagcaagccagagctgggaccctctcacagacac
agccaaggtgccaagacaatcaggagggcggaccagaaatgacagcaata
aaacttgaggaaaatcaccttataaaaacatgaggtcaagccgggcatgg
tggcgcacacctttaatcccagcactcagaaggcagaggcaagcggattt
ctgagttcaaggccagcctggtctacagagtgagttcaggacaaccaggc
tacacagagaaaccctgtctgaaaaaccaaaaccaacaaacaacaaaaca
aacaacatgagatcagttctgagagggtgtcagacttcatctcactgcct
cggatgctgtcgtaccacagcaggaaactagtctcaggacaactcatggg
cttggactagtacgcaaacataacagccactaaacaatattaaggcaagc
ctacctcggatctgtcagtctactctgattggagtctttcctttacgcaa
ggaagatgtacccca
gaattcacaaagatcccttgagtgctgaaattaaagacatgcaccaccac
gactggctacaagtgttcttagctgctgagccatctctccagcctttctt
cctttcaatttttgatacaacccaggatctcatgcacacaaggcaagaac
tctacactgagccagtcaccaagtcctgttaggattttcttcatccccac
ccccgatcccaccccccaccctccatcttgaaacagggtttcatgatgta
actctggctagcctggaacttgctatgttgaccaggctggccgcaaactc
agcgttccacctgcctttgtctcccaggtactgggattaaagttgtgtgc
caccatgcccggccctactaggatttttgtaatgactctcatatgaaatc
aacgtttacactgtttgtttctaaaacataaacctgtgcatatgtgacaa
cagaccagagcatgttaaagccctttctccaaggcacctgtggccaggtg
acctcgtagtaagcagggggggaaagaggtgctggcctgaggctcgcttg
tataagcttacagcctgtgctgggctgggacctccatgactaggcctctc
agccccttggtgagtttcccacgggcagcacaacatccgctcagctccat
cctccgcacgccaaagaacagaaactgttcttcctgcagagacgacaaag
actagtttcagggcgtctgaaggagccagcgtacacagctgtgagcacac
aaagagacttgttagtgctgggccaatgtgacaagcaacgggttcctcag
ccaactcttggggacaaacagctattttttatagtagttcagagaaatcc
agctcagaaaacggcctgctttctagcgcactcaagactcttgaggaagt
ggccctgcctctaactgtgtatgtagtaacaaacccgttggcagattgtc
agtctacctgttgggtattaatgctatgaaatccatcgaagcccttattt
aataaaaaaatccctttgaggttgggggggggggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_125438114_125439303
seq2: B6Ng01-144D07.b_45_1209

seq1  GAATTCTTTAACAGACAAGAGCAGCAGTCAGCCAGGATGGAGAGCATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACAGACAAGAGCAGCAGTCAGCCAGGATGGAGAGCATCTA  50

seq1  TAAACCGAAGACTCAGAAGGCAGTGAGGAAAACTCAGGGAAGGGAGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGAAGACTCAGAAGGCAGTGAGGAAAACTCAGGGAAGGGAGGGGG  100

seq1  AGACTTGGATAGTTAAGTGCAAGGTGCTCCACACTGTCACACAGCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGATAGTTAAGTGCAAGGTGCTCCACACTGTCACACAGCTGAGG  150

seq1  TGAAGAGTAGGCAGGAGCTGCACTAAGACAGGAATGGCTGAGTCTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTAGGCAGGAGCTGCACTAAGACAGGAATGGCTGAGTCTGAGCA  200

seq1  AGGCTCCAACACAAGGCAGTGGGAGTAGGGTGCTTCTCTGACCTGAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAACACAAGGCAGTGGGAGTAGGGTGCTTCTCTGACCTGAATGC  250

seq1  CCACAGACTCAGCAGTATGTGATGTTTCTGAAGCCAGCCTAGTGAGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACTCAGCAGTATGTGATGTTTCTGAAGCCAGCCTAGTGAGAGTC  300

seq1  TTTTTTAAAAAGTCTAGGAAACGACAGTGCAGCCTTTCCCCTTGTTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAGTCTAGGAAACGACAGTGCAGCCTTTCCCCTTGTTCCTG  350

seq1  CTCTACAACTATCTGACTTTGTTGCATGGAAACTTCTATGAATATACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAACTATCTGACTTTGTTGCATGGAAACTTCTATGAATATACCTG  400

seq1  AAAACCATGCCTTTGCATCTATTCGGTGTGAAACTGTCCCCAAAAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATGCCTTTGCATCTATTCGGTGTGAAACTGTCCCCAAAAGTAAG  450

seq1  TTCATGCTACATGGATACTCAAGGGTCCCAGAGGCCCCTTTATCTGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTACATGGATACTCAAGGGTCCCAGAGGCCCCTTTATCTGTTCT  500

seq1  TTTTAAACAGCAGCTACATATGTCATGTTCACAAACCACTTCACAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACAGCAGCTACATATGTCATGTTCACAAACCACTTCACAGTGAA  550

seq1  CCGAATGAGCAGATCATGTGACTCTGCAGTGTCTGCCTGTATACCACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATGAGCAGATCATGTGACTCTGCAGTGTCTGCCTGTATACCACAGC  600

seq1  ACTTGCTAGTGATTACAGGGGGAGTATTAGCAACATGCAGAAAGAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTAGTGATTACAGGGGGAGTATTAGCAACATGCAGAAAGAATCAA  650

seq1  AATGAAGGCTCACTTACAGCAAGCCAGAGCTGGGACCCTCTCACAGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCTCACTTACAGCAAGCCAGAGCTGGGACCCTCTCACAGACAC  700

seq1  AGCCAAGGTGCCAAGACAATCAGGAGGGCGGACCAGAAATGACAGCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGTGCCAAGACAATCAGGAGGGCGGACCAGAAATGACAGCAATA  750

seq1  AAACTTGAGGAAAATCACCTTATAAAAACATGAGGTCAAGCCGGGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAGGAAAATCACCTTATAAAAACATGAGGTCAAGCCGGGCATGG  800

seq1  TGGCGCACACCTTTAATCCCAGCACTCAGAAGGCAGAGGCAAGCGGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACACCTTTAATCCCAGCACTCAGAAGGCAGAGGCAAGCGGATTT  850

seq1  CTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGG  900
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  CTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTT-CAGGACAACCA-G  898

seq1  GCTACACAGAGAAACCCTGTCTTGAAAAAACCAAAACCAAACAAAACAAC  950
      ||||||||||||||||||||||   |||||||||||||||   |||||||
seq2  GCTACACAGAGAAACCCTGTCT--GAAAAACCAAAACCAA--CAAACAAC  944

seq1  AAAAACAAACAAACATGAGATCAGTTCTGAGAGTGTGTCAGACTTCATCT  1000
       ||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  -AAAACAAAC-AACATGAGATCAGTTCTGAGAGGGTGTCAGACTTCATCT  992

seq1  CACTGGCTCAGATGCTGTCGTACCACAGCAAGAAACCCAGTCCCAGGACA  1050
      ||||| ||| |||||||||||||||||||| |||| | |||| |||||||
seq2  CACTGCCTCGGATGCTGTCGTACCACAGCAGGAAA-CTAGTCTCAGGACA  1041

seq1  ACTCATGGGCTTGGACATAGTCACGCAAACATAAACAAGCAACTAAACAT  1100
      |||||||||||||||| |||| ||||||||||||   ||| |||||||| 
seq2  ACTCATGGGCTTGGAC-TAGT-ACGCAAACATAA--CAGCCACTAAACA-  1086

seq1  ATATTTTAAGGCAAAGCCTTACTCTGATCTGTCCAGTTCTAACTTCT-TG  1149
        || ||||||| ||||||  ||| ||||||| ||||     || || ||
seq2  --ATATTAAGGC-AAGCCTACCTCGGATCTGT-CAGT-----CTACTCTG  1127

seq1  ATTTTGGAGTCTTTCCTTTACGCCAGGAAGTATGTACCCCA  1190
      |  |||||||||||||||||||| |||||| ||||||||||
seq2  A--TTGGAGTCTTTCCTTTACGCAAGGAAG-ATGTACCCCA  1165

seq1: chr8_125607367_125608404
seq2: B6Ng01-144D07.g_66_1101 (reverse)

seq1  CGCCCCCCCCCCCAACCTCAAAGAGATATTTTATTTAAATAAGGGCTTCG  50
      ||||||||||||||||||||||| ||| ||||  ||||||||||||||||
seq2  CGCCCCCCCCCCCAACCTCAAAGGGATTTTTTTATTAAATAAGGGCTTCG  50

seq1  ATGGATTTCATAGCATTAATACTCAACAGGTAGACTGACAATCTGCCAAC  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGGATTTCATAGCATTAATACCCAACAGGTAGACTGACAATCTGCCAAC  100

seq1  GGGTTTGTTACCTTACATACACAGTTAGAGGCAGGGCCACCTTCCTCAAG  150
      |||||||||||  |||||||||||||||||||||||||| ||||||||||
seq2  GGGTTTGTTAC--TACATACACAGTTAGAGGCAGGGCCA-CTTCCTCAAG  147

seq1  AGTCTTGAGTGCGCTAGAAAGCAGGCCGTTTTCTGAGCTGGATTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAGTGCGCTAGAAAGCAGGCCGTTTTCTGAGCTGGATTTCTCTG  197

seq1  AACTACTAT-AAAAATAGCTGTTTGTCCCCAAGAGTTGGCTGAGGAACCC  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTATAAAAAATAGCTGTTTGTCCCCAAGAGTTGGCTGAGGAACCC  247

seq1  GTTGCTTGTCACATTGGCCCAGCACTAACAAGTCTCTTTGTGTGCTCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGTCACATTGGCCCAGCACTAACAAGTCTCTTTGTGTGCTCACA  297

seq1  GCTGTGTACGCTGGCTCCTTCAGACGCCCTGAAACTAGTCTTTGTCGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTACGCTGGCTCCTTCAGACGCCCTGAAACTAGTCTTTGTCGTCT  347

seq1  CTGCAGGAAGAACAGTTTCTGTTCTTTGGCGTGCGGAGGATGGAGCTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAAGAACAGTTTCTGTTCTTTGGCGTGCGGAGGATGGAGCTGAG  397

seq1  CGGATGTTGTGCTGCCCGTGGGAAACTCACCAAGGGGCTGAGAGGCCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGTTGTGCTGCCCGTGGGAAACTCACCAAGGGGCTGAGAGGCCTAG  447

seq1  TCATGGAGGTCCCAGCCCAGCACAGGCTGTAAGCTTATACAAGCGAGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGGTCCCAGCCCAGCACAGGCTGTAAGCTTATACAAGCGAGCCT  497

seq1  CAGGCCAGCACCTCTTTCCCCCCCTGCTTACTACGAGGTCACCTGGCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCACCTCTTTCCCCCCCTGCTTACTACGAGGTCACCTGGCCAC  547

seq1  AGGTGCCTTGGAGAAAGGGCTTTAACATGCTCTGGTCTGTTGTCACATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTTGGAGAAAGGGCTTTAACATGCTCTGGTCTGTTGTCACATAT  597

seq1  GCACAGGTTTATGTTTTAGAAACAAACAGTGTAAACGTTGATTTCATATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTTTATGTTTTAGAAACAAACAGTGTAAACGTTGATTTCATATG  647

seq1  AGAGTCATTACAAAAATCCTAGTAGGGCCGGGCATGGTGGCACACAACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATTACAAAAATCCTAGTAGGGCCGGGCATGGTGGCACACAACTT  697

seq1  TAATCCCAGTACCTGGGAGACAAAGGCAGGTGGAACGCTGAGTTTGCGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGTACCTGGGAGACAAAGGCAGGTGGAACGCTGAGTTTGCGGC  747

seq1  CAGCCTGGTCAACATAGCAAGTTCCAGGCTAGCCAGAGTTACATCATGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCAACATAGCAAGTTCCAGGCTAGCCAGAGTTACATCATGAA  797

seq1  ACCCTGTTTCAAGATGGAGGGTGGGGGGTGGGATCGGGGGTGGGGATGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTTCAAGATGGAGGGTGGGGGGTGGGATCGGGGGTGGGGATGAA  847

seq1  GAAAATCCTAACAGGACTTGGTGACTGGCTCAGTGTAGAGTTCTTGCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCTAACAGGACTTGGTGACTGGCTCAGTGTAGAGTTCTTGCCTT  897

seq1  GTGTGCATGAGATCCTGGGTTGTATCAAAAATTGAAAGGAAGAAAGGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGAGATCCTGGGTTGTATCAAAAATTGAAAGGAAGAAAGGCTG  947

seq1  GAGAGATGGCTCAGCAGCTAAGAACACTTGTAGCCAGTCGTGGTGGTGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGCTCAGCAGCTAAGAACACTTGTAGCCAGTCGTGGTGGTGCA  997

seq1  TGTCTTTAATTTCAGCACTCAAGGGATCTTTGTGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTAATTTCAGCACTCAAGGGATCTTTGTGAATTC  1036