BAC Information

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BAC

Clone NameB6Ng01-144I09
Chromosome8 (Build37)
Map Location 55,374,892 - 55,521,198
singlet/doubletdoublet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144I09.bB6Ng01-144I09.g
ACCDH942180DH942181
length1,1581,016
definitionDH942180|Mus musculus domesticus DNA, BAC clone: B6Ng01-144I09, 5' end.DH942181|Mus musculus domesticus DNA, BAC clone: B6Ng01-144I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,520,010 - 55,521,198)(55,374,892 - 55,375,914)
sequence
gaattctcagtgagagtcgactttcatctttcaaaaactactgttatgaa
gtctgctgataatgtaaaatactgagcagcgacaaaacagtgatgcacta
tccacaggaccttctacatggaaatgctgggactttttttccttcgtatc
tgtaaaagatggcagacaactgttgggaatttgatatggcccccattatg
ttcccaaagtaataataataataattaatattaataataataaagcgaca
ttaatttagtgctcatatctagtttctgtttttcaactttctataactaa
taccatctaatcagtacttaaaatgggtgtagagatttacaaaggggtaa
catgtaggaaaattttatttatttgctaacactatttctgtaacatataa
gtaatgggtagcagttgagatatcacaaacattaaacttataattcatta
ttacttttgtctattatatgaacagattaattcaagtgcatgtgttttag
gaagttactatttttttcactactgtcctagtttgctttttatagctctg
ataagacactgacaaaatcaactgaaggaggaggaaatacttagttcatc
ttatagcttattgttcatcctgaagtgaagtcagggtaggaactgaagac
caggactaagacagaaatcatagcagggcttgtgtcccatggcctactga
gcttgacttcttatataacctcattccacctggccagggtgccacttctc
agtgagctgggaccacccctatcaattattaatcatgaaaatgtcctata
cacttgcttacaggccaatctgataaaggcaactattcttcccagatagg
tctaattttgtgtcaagtttcaaaaaaaaaaaaaaaaaagcagtgcaatt
gctgaatgtgttttttttttttaacataattcttcatctagacatttctg
cttttaatgactatgcatatttaaaatctatgtttttttgtgcaatagat
gatgtcataagcgcaattgtcattttggagatgctggtcactcacacatc
acacgttcaactagttaggtcttccattctgtgtttgtagatactgcagc
ttggtacagctactatggtagtctcgatctgcatttgttcacttcataat
ggctaggc
gaattctaggcccagtcgacctggtgtgggcttcagggagccttaagttt
cttaagatgcttcatttgcctccatctggaataatctttgaggaaatggg
tatcgtatatatgaaattttgatgtatatgctggtactagctttattaaa
ataaatataaaaattatatataatatttatgcctaaaaaatcacagacat
atgttcatcagttttcaagaaagttttgacagttgtaaaatccatcatag
agataactatcttagatgaagatatcttgcagagataatatatacaattg
aactttccatgttatgaatactaagtaaaaccaacttggaaaatagttta
ataattttatattaatataaataacttgtctgagattcatcagagaatga
attttaaataagagatgctgagagtatggaaaaggttggatttttgataa
aaagggaggtgaaatgaaagcagagactgtcacatagacactggaaggag
aattatggcaatgaacttccctcagcagagcctttgccgctgtttggcta
ctgtgcagaatcactggttttatctatcggcacagaaacttctggtggaa
aaaccttcattctgcaactgtcatcaaatatctgatctctctttagggac
aggttaaagctaccatttccttcatattcataatatcactttgaacccag
tttttgtctgcttctacacaataccagtatccctccccctctgagattga
tgcatcctgcagaaggggaaggggaaagactgtaagagacagaggggatg
gaggacatcaggagaacacagcctcctgcatcaacttagcaaagtgacag
acagttggttaatggagcatagggtcaacattttctaaaagttttgttgt
ttagattgttttaccatggttgcctcatgttaatttcagaggacaaggta
atatgatttaataaagccttctgaagggccattctcattaaatcgtgctc
atttatgagatggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55520010_55521198
seq2: B6Ng01-144I09.b_47_1204 (reverse)

seq1  GCCTAG-CATTATGAAGATGGAACAAATTGGTAGGAATCTGGAGCACTCC  49
      |||||| ||||||||||   ||||||||  | ||  |||  ||| |||  
seq2  GCCTAGCCATTATGAAG--TGAACAAAT--GCAG--ATC--GAG-ACT-A  40

seq1  CCATGGTAGGCTGTTACACAAGCTGCAGTATCTAACAAACAACCAAGAAT  99
      |||| ||| |||| ||| ||||||||||||||| |||||||    |||||
seq2  CCATAGTA-GCTG-TAC-CAAGCTGCAGTATCT-ACAAACA---CAGAAT  83

seq1  GGGGATAGGACCCTAACTAGGTTGGAAGTGTGATGGTGTGAGTGACCAGC  149
      ||    | || |||||||| |||| | ||||||| |||||||||||||||
seq2  GG----AAGA-CCTAACTA-GTTGAACGTGTGAT-GTGTGAGTGACCAGC  126

seq1  AATCTCCAAAATGACAATTGCGCTTTAATGACATCATCTTATTGCACAAA  199
       ||||||||||||||||||||||||  ||||||||||| |||||||| ||
seq2  -ATCTCCAAAATGACAATTGCGCTT--ATGACATCATC-TATTGCAC-AA  171

seq1  AAAAACATAGATTTTAAAATATGCATAGTCATTGAAAAGCAGAAATGTCT  249
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  AAAAACATAGATTTT-AAATATGCATAGTCATT-AAAAGCAGAAATGTCT  219

seq1  AGATGAAGAATTAATGTTAAAAAAAAAAAACACATTCAGCAATTGCACTG  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGAATT-ATGTTAAAAAAAAAAAACACATTCAGCAATTGCACTG  268

seq1  CTTTTTTTTTTTTTTTTTTGAAACTTGACACAAAATTAGACCTATCTGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTTTTGAAACTTGACACAAAATTAGACCTATCTGGG  318

seq1  AAGAATAGTTGCCTTTATCAGATTGGCCTGTAAGCAAGTGTATAGGACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGTTGCCTTTATCAGATTGGCCTGTAAGCAAGTGTATAGGACAT  368

seq1  TTTCATGATTAATAATTGATAGGGGTGGTCCCAGCTCACTGAGAAGTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATTAATAATTGATAGGGGTGGTCCCAGCTCACTGAGAAGTGGC  418

seq1  ACCCTGGCCAGGTGGAATGAGGTTATATAAGAAGTCAAGCTCAGTAGGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCCAGGTGGAATGAGGTTATATAAGAAGTCAAGCTCAGTAGGCC  468

seq1  ATGGGACACAAGCCCTGCTATGATTTCTGTCTTAGTCCTGGTCTTCAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACACAAGCCCTGCTATGATTTCTGTCTTAGTCCTGGTCTTCAGTT  518

seq1  CCTACCCTGACTTCACTTCAGGATGAACAATAAGCTATAAGATGAACTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTGACTTCACTTCAGGATGAACAATAAGCTATAAGATGAACTAA  568

seq1  GTATTTCCTCCTCCTTCAGTTGATTTTGTCAGTGTCTTATCAGAGCTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCTCCTCCTTCAGTTGATTTTGTCAGTGTCTTATCAGAGCTATA  618

seq1  AAAAGCAAACTAGGACAGTAGTGAAAAAAATAGTAACTTCCTAAAACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAACTAGGACAGTAGTGAAAAAAATAGTAACTTCCTAAAACACA  668

seq1  TGCACTTGAATTAATCTGTTCATATAATAGACAAAAGTAATAATGAATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGAATTAATCTGTTCATATAATAGACAAAAGTAATAATGAATTA  718

seq1  TAAGTTTAATGTTTGTGATATCTCAACTGCTACCCATTACTTATATGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAATGTTTGTGATATCTCAACTGCTACCCATTACTTATATGTTA  768

seq1  CAGAAATAGTGTTAGCAAATAAATAAAATTTTCCTACATGTTACCCCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAGTGTTAGCAAATAAATAAAATTTTCCTACATGTTACCCCTTT  818

seq1  GTAAATCTCTACACCCATTTTAAGTACTGATTAGATGGTATTAGTTATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTCTACACCCATTTTAAGTACTGATTAGATGGTATTAGTTATAG  868

seq1  AAAGTTGAAAAACAGAAACTAGATATGAGCACTAAATTAATGTCGCTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAAAAACAGAAACTAGATATGAGCACTAAATTAATGTCGCTTTA  918

seq1  TTATTATTAATATTAATTATTATTATTATTACTTTGGGAACATAATGGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAATATTAATTATTATTATTATTACTTTGGGAACATAATGGGG  968

seq1  GCCATATCAAATTCCCAACAGTTGTCTGCCATCTTTTACAGATACGAAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATCAAATTCCCAACAGTTGTCTGCCATCTTTTACAGATACGAAGG  1018

seq1  AAAAAAAGTCCCAGCATTTCCATGTAGAAGGTCCTGTGGATAGTGCATCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCCCAGCATTTCCATGTAGAAGGTCCTGTGGATAGTGCATCA  1068

seq1  CTGTTTTGTCGCTGCTCAGTATTTTACATTATCAGCAGACTTCATAACAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTCGCTGCTCAGTATTTTACATTATCAGCAGACTTCATAACAG  1118

seq1  TAGTTTTTGAAAGATGAAAGTCGACTCTCACTGAGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGAAAGATGAAAGTCGACTCTCACTGAGAATTC  1158

seq1: chr8_55374892_55375914
seq2: B6Ng01-144I09.g_70_1085

seq1  GAATTCTAGGCCCAGTCGACCTGGTGTGGGCTTCAGGGAGCCTTAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCCAGTCGACCTGGTGTGGGCTTCAGGGAGCCTTAAGTTT  50

seq1  CTTAAGATGCTTCATTTGCCTCCATCTGGAATAATCTTTGAGGAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGATGCTTCATTTGCCTCCATCTGGAATAATCTTTGAGGAAATGGG  100

seq1  TATCGTATATATGAAATTTTGATGTATATGCTGGTACTAGCTTTATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTATATATGAAATTTTGATGTATATGCTGGTACTAGCTTTATTAAA  150

seq1  ATAAATATAAAAATTATATATAATATTTATGCCTAAAAAATCACAGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAAAAATTATATATAATATTTATGCCTAAAAAATCACAGACAT  200

seq1  ATGTTCATCAGTTTTCAAGAAAGTTTTGACAGTTGTAAAATCCATCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATCAGTTTTCAAGAAAGTTTTGACAGTTGTAAAATCCATCATAG  250

seq1  AGATAACTATCTTAGATGAAGATATCTTGCAGAGATAATATATACAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTATCTTAGATGAAGATATCTTGCAGAGATAATATATACAATTG  300

seq1  AACTTTCCATGTTATGAATACTAAGTAAAACCAACTTGGAAAATAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCATGTTATGAATACTAAGTAAAACCAACTTGGAAAATAGTTTA  350

seq1  ATAATTTTATATTAATATAAATAACTTGTCTGAGATTCATCAGAGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTATATTAATATAAATAACTTGTCTGAGATTCATCAGAGAATGA  400

seq1  ATTTTAAATAAGAGATGCTGAGAGTATGGAAAAGGTTGGATTTTTGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATAAGAGATGCTGAGAGTATGGAAAAGGTTGGATTTTTGATAA  450

seq1  AAAGGGAGGTGAAATGAAAGCAGAGACTGTCACATAGACACTGGAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGGTGAAATGAAAGCAGAGACTGTCACATAGACACTGGAAGGAG  500

seq1  AATTATGGCAATGAACTTCCCTCAGCAGAGCCTTTGCCGCTGTTTGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGCAATGAACTTCCCTCAGCAGAGCCTTTGCCGCTGTTTGGCTA  550

seq1  CTGTGCAGAATCACTGGTTTTATCTATCGGCACAGAAACTTCTGGTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAATCACTGGTTTTATCTATCGGCACAGAAACTTCTGGTGGAA  600

seq1  AAACCTTCATTCTGCAACTGTCATCAAATATCTGATCTCTCTTTAGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCATTCTGCAACTGTCATCAAATATCTGATCTCTCTTTAGGGAC  650

seq1  AGGTTAAAGCTACCATTTCCTTCATATTCATAATATCACTTTGAACCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAGCTACCATTTCCTTCATATTCATAATATCACTTTGAACCCAG  700

seq1  TTTTTGTCTGCTTCTACACAATACCAGTATCCCTCCCCCTCTGAGATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGCTTCTACACAATACCAGTATCCCTCCCCCTCTGAGATTGA  750

seq1  TGCATCCTGCAGAAGGGGAAGGGGAAAGACTGTAAGAGACAGAGGGGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTGCAGAAGGGGAAGGGGAAAGACTGTAAGAGACAGAGGGGATG  800

seq1  GAGGACATCAGGAGAACACAGCCTCCTGCATCAACTCAGCAAAGTGACAG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGACATCAGGAGAACACAGCCTCCTGCATCAACTTAGCAAAGTGACAG  850

seq1  ACAG-TGGTTAATGGAGCATAGGGTCAACATTTTCTAAAAGTTTTGTTGT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGTTAATGGAGCATAGGGTCAACATTTTCTAAAAGTTTTGTTGT  900

seq1  TTAGTTTGTTTTACCATGGTTGCCTCATGTTAATTACAGAGGACAAGGTA  949
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAGATTGTTTTACCATGGTTGCCTCATGTTAATTTCAGAGGACAAGGTA  950

seq1  ATATGAATTTAATAAAGCCTTCCTGAAGGTGCCATTCTCATTAAATCCGT  999
      ||||| ||||||||||||||| ||||||| |||||||||||||||| |||
seq2  ATATG-ATTTAATAAAGCCTT-CTGAAGG-GCCATTCTCATTAAAT-CGT  996

seq1  GCTCAATTTTAATGATGATGGTGT  1023
      |||||   || |||| ||||||||
seq2  GCTCA---TTTATGA-GATGGTGT  1016