BAC Information

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BAC

Clone NameB6Ng01-145E14
Chromosome11 (Build37)8 (Build37)
Map Location 80,550,696 - 80,551,0255,486,976 - 5,488,069
singlet/doubletsingletsinglet
Overlap geneMyo1d
Upstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1
Downstream geneTmem98, Spaca3, Accn1, 1700071K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145E14.bB6Ng01-145E14.g
ACCDH942731DH942732
length1,0171,074
definitionDH942731|Mus musculus domesticus DNA, BAC clone: B6Ng01-145E14, 5' end.DH942732|Mus musculus domesticus DNA, BAC clone: B6Ng01-145E14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,550,696 - 80,551,025)(5,486,976 - 5,488,069)
sequence
gaattcaaggcccatacctaaacataataaaagcaatctacagcaaacca
gtagccaacttcaaactaagtggagagatacttgaagcaatcccactaaa
atcaggaactagacaatgctgcccactctctccctaccaattcaatatgg
tactttaagtcctagccagagcaattaggcaacaaaaggcaatcaaaggg
atacaaattggaaaggaagaagtcaaaaactatttgcagatgatatgata
gtatgcttaagtgacaccaaaaattgcaccagagaactcttaaacccgat
aaacaactttagcaatgtagctggatataaaattaccccaaacaaatcag
tggcctttctctaccaaaagaaaaactgtctgagaaggaaattagggaaa
caacactcttcacaatagtcacaaataatataaaataccttggtgtgact
ctaagtaagaaagtgaacattctgtatattaaaaacttcaagtttctgaa
gaaagaaatgaaagaatcagaagatggaaagatcttccatgctcatggat
tgacagggttaatatagtaaaaatggccatcttgccagaagcaaactaca
gattcaatgcaatctccatcaaaattccaactcaattcttcacagttaga
aagagaaatttgcaaattcatggggaataacaaaaaatctaggatagaga
aaacaataaaagaacttctggtggaatcacaattcctgacctaaagctgt
aatacagaacaagtatgatttaaaaaaaaaaaaactgcatggatttggta
ttacatgacagacaggtagatcaatggagaattgaaggcccagaaatgaa
cccacacacctatggtcacttgatctttaacaagggagctaaaccatcca
gtggggaaaagacaatattttcaataaatggtgatggctcacctgtaatt
agcatatagaagatggaaatagatccattcttatctcctagtgatttgat
tattgtgttgtaggagg
gaattcagggaaatggagagttaggcttcatctgcaaatttatagagaca
caaaataatttctagcactttggggagatggataagctctcagcgccaga
agtcccctaatgaaagaatcagaacagaatggctggcaagtgacagagga
aggataatcttaaatacaaatatgaatatcatgaatatcttgtcagggta
taagaaactgaatggttttggcttaatgggttagggaataaataattcca
tgatttttctttttatatacgtagaccaataaatatttcttgaagattca
ttaggagactttggcctcaaaaagataaaaataaatacgtattttttctt
gattacttttataatgtttaaacttttattttgttttggattttctccca
atagttttgaagtggatgtctctggatttcctaggggggaaatgtatcag
aatcttcagttgggatcagaaaaggagtctagtattatcttttgcagctc
tcttaaaataaaaatagtatggattgctcgtgataagagcacctttaact
atgtagtgtcatgtgtatcatttaaagagttatttacagtagagtataat
gatcatatgtgaaagcaggtgtacatcatgtgaatatctaaattctaaat
attaatttttttaacctgttgctacttacctgacaaaagcctcttaaaaa
gaaagaattgattccattgatcctgctcacagttcagaggtatactgcat
cagaatgggaaagtcaggggcaggcaggagtttgagacagctgctcacat
tacatccaggatcaagcagagagaatgaatctaggctagagttcagttca
ctttctctgtttcatacagttcaagatcacacccagggaatggagttgcc
cttagtgggtgggtcttcccacttcaattaaataatcaagataattcctc
acagcagccagatgcccaatcttaggtatacttttattctctcaagtgat
agtacactaaccatatcactaaaatggtacttcttgtttctagtgcttat
aaatcaattttctttcttcagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80550696_80551025
seq2: B6Ng01-145E14.b_615_941

seq1  GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC  50
      ||||||||||| ||||||||| |||||| ||||||||||||||||||| |
seq2  GTAAAAATGGCCATCTTGCCAGAAGCAAACTACAGATTCAATGCAATCTC  50

seq1  CATCAAAATTCCAACTCAATTCTTCAAGGAATTAGAAGGAGCAATTTGCA  100
      ||||||||||||||||||||||||||   | |||||| ||| ||||||||
seq2  CATCAAAATTCCAACTCAATTCTTCA--CAGTTAGAAAGAGAAATTTGCA  98

seq1  AATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAG  150
      |||||||  |||||||||||||| |||||||||  |||||          
seq2  AATTCATGGGGAATAACAAAAAATCTAGGATAGAGAAAAC----------  138

seq1  GATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTA  200
       |||||||||| |||||||||||||| || ||||||||||||||||| ||
seq2  AATAAAAGAACTTCTGGTGGAATCACAATTCCTGACCTAAAGCTGTAATA  188

seq1  CAGAGCAATTGTGAT----------AAAAACTGCATGGTACTGGTA-TAG  239
      |||| ||| | ||||          |||||||||||||   ||||| || 
seq2  CAGAACAAGTATGATTTAAAAAAAAAAAAACTGCATGGATTTGGTATTAC  238

seq1  A-GACAGACAAGTAGACCAATGGAATAGAATTGAAGACCGAGAAATGAAC  288
      | |||||||| ||||| ||||||   |||||||||| || ||||||||||
seq2  ATGACAGACAGGTAGATCAATGG---AGAATTGAAGGCCCAGAAATGAAC  285

seq1  CCACACACCTATGGTCACTTGATCTTCAACAAGGGAGCTAAA  330
      |||||||||||||||||||||||||| |||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTAACAAGGGAGCTAAA  327

seq1: chr8_5486976_5488069
seq2: B6Ng01-145E14.g_67_1140

seq1  GAATTCAGGGAAATGGAGAGTTAGGCTTCATCTGCAAATTTATAGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAAATGGAGAGTTAGGCTTCATCTGCAAATTTATAGAGACA  50

seq1  CAAAATAATTTCTAGCACTTTGGGGAGATGGATAAGCTCTCAGCGCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATTTCTAGCACTTTGGGGAGATGGATAAGCTCTCAGCGCCAGA  100

seq1  AGTCCCCTAATGAAAGAATCAGAACAGAATGGCTGGCAAGTGACAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTAATGAAAGAATCAGAACAGAATGGCTGGCAAGTGACAGAGGA  150

seq1  AGGATAATCTTAAATACAAATATGAATATCATGAATATCTTGTCAGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATCTTAAATACAAATATGAATATCATGAATATCTTGTCAGGGTA  200

seq1  TAAGAAACTGAATGGTTTTGGCTTAATGGGTTAGGGAATAAATAATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACTGAATGGTTTTGGCTTAATGGGTTAGGGAATAAATAATTCCA  250

seq1  TGATTTTTCTTTTTATATACGTAGACCAATAAATATTTCTTGAAGATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTTTTTATATACGTAGACCAATAAATATTTCTTGAAGATTCA  300

seq1  TTAGGAGACTTTGGCCTCAAAAAGATAAAAATAAATACGTATTTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGACTTTGGCCTCAAAAAGATAAAAATAAATACGTATTTTTTCTT  350

seq1  GATTACTTTTATAATGTTTAAACTTTTATTTTGTTTTGGATTTTCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTTTATAATGTTTAAACTTTTATTTTGTTTTGGATTTTCTCCCA  400

seq1  ATAGTTTTGAAGTGGATGTCTCTGGATTTCCTAGGGGGGAAATGTATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTGAAGTGGATGTCTCTGGATTTCCTAGGGGGGAAATGTATCAG  450

seq1  AATCTTCAGTTGGGATCAGAAAAGGAGTCTAGTATTATCTTTTGCAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAGTTGGGATCAGAAAAGGAGTCTAGTATTATCTTTTGCAGCTC  500

seq1  TCTTAAAATAAAAATAGTATGGATTGCTCGTGATAAGAGCACCTTTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATAAAAATAGTATGGATTGCTCGTGATAAGAGCACCTTTAACT  550

seq1  ATGTAGTGTCATGTGTATCATTTAAAGAGTTATTTACAGTAGAGTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGTCATGTGTATCATTTAAAGAGTTATTTACAGTAGAGTATAAT  600

seq1  GATCATATGTGAAAGCAGGTGTACATCATGTGAATATCTAAATTCTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATGTGAAAGCAGGTGTACATCATGTGAATATCTAAATTCTAAAT  650

seq1  ATTAATTTTTTTAACCTGTTGCTACTTACCTGACAAAAGCCTCTTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTTTTAACCTGTTGCTACTTACCTGACAAAAGCCTCTTAAAAA  700

seq1  GAAAGAATTGATTCCATTGATCCTGCTCACAGTTCAGAGGTATACTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTGATTCCATTGATCCTGCTCACAGTTCAGAGGTATACTGCAT  750

seq1  CAGAATGGGAAAGTCAGGGGGCAGGCAGGAGTTTGAGACAGCTGCTCACA  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGAATGGGAAAGTCA-GGGGCAGGCAGGAGTTTGAGACAGCTGCTCACA  799

seq1  TTACATCCAGGATCAAGCAGAGAGAATGAATCTAGGCTAGAGTTCAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCAGGATCAAGCAGAGAGAATGAATCTAGGCTAGAGTTCAGTTC  849

seq1  ACTTTCTCTGTTTCATACAGTTCAAGATCACACCCAGGGAATGGAGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTGTTTCATACAGTTCAAGATCACACCCAGGGAATGGAGTTGC  899

seq1  CCTTAGTGGGTGGGTCTTCCCACTTCAATTAACATAATCAAGATAAATCC  950
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CCTTAGTGGGTGGGTCTTCCCACTTCAATTAA-ATAATCAAGATAATTCC  948

seq1  TCACAGGCAGGCCCAGATGCCCAATCTCAGGTTATAC-TATATTCTCTCA  999
      ||||| ||||  ||||||||||||||| ||| ||||| | ||||||||||
seq2  TCACA-GCAG--CCAGATGCCCAATCTTAGG-TATACTTTTATTCTCTCA  994

seq1  AGTTGATAGTTAACACTAACCATATCACTTAAAAATTGTGTAACCTCTCT  1049
      || |||||||  |||||||||||||||||  ||||| ||   || |||  
seq2  AG-TGATAGT--ACACTAACCATATCACT--AAAATGGT---ACTTCT--  1034

seq1  ATGTTTCTAGTGCTTATTTAAATTCAATTTTTCTTTCTTCAGCTA  1094
       ||||||||||||||||   || |||| |||||||||||||||||
seq2  -TGTTTCTAGTGCTTAT---AAATCAA-TTTTCTTTCTTCAGCTA  1074