BAC Information

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BAC

Clone NameB6Ng01-145H22
Chromosome8 (Build37)
Map Location 54,430,587 - 54,591,067
singlet/doubletdoublet
Overlap genenone
Upstream gene1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145H22.bB6Ng01-145H22.g
ACCDH942883DH942884
length1,156338
definitionDH942883|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H22, 5' end.DH942884|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,589,883 - 54,591,067)(54,430,587 - 54,430,903)
sequence
gaattctgacggcaggacttccttccacaaaggcacaggctttaggacag
ggagcagagatgtggtcccaggaaggaaggaaccagagccctggggagga
tcctctgtagcaggaactaactaccaggaaggctcaggattctgctttaa
gactgggtagcaggacagccagggctacacagagaaagaaaccctgtctg
gaaaagaaaaaaaacaaaaacaaaaacaaaacaaaacaaaacaaaacaaa
acaaaacaaaaaaactgggtagcaggagcagtttgctttgagttctatga
gggattggatagccaagagtaagaagggcagatcttacatttgaaacgct
cctaaatcacagacctcctctaccagccacctaaattggcacctcagaaa
agagatgtcaaattcttatttggcagacaaagggacaaaatgcaggaatg
aggaaagtgaatataaaggtcgagaaacaaccccattgtagaagggacaa
aatatgcagcttagttcaacaagggtaacctaagcaccagaaggaaccta
aggtcgattacttcgctgtccactcatgtggtggctgagctcttagtaag
agaaggcaacacctcagaggtttctgggttcttatgcaaaatagttaaag
acactgacttcaacagaatgaaaggtaaatagctagccagctatttggca
gaaaggtggacaaacaacccatccagagaggactcagaggcagcttataa
tgaatgggccttgaaaacatcaagatctgcccataaggttaaggctactt
ctagccatttaaccagtcatactcacgtgaccactgaagtagaatccaga
ccatttacaaggaccaaactgcaacaaataagaaaagattttgcacaaga
ggagacgaggatgcatactatatatcgcttatgagaaaaggagcttgtac
agtgatgttgtcaaagggattctagaacatccccacatgtttgaaagtct
agaaagaattttagattacagccgaggcaacccacactttatgatggtaa
cagcttcttgagtagttcctcacatttgtctgctcattgaggcgaaggac
atgagaaatgaatgagcatgtcacgtttgaaatgaatgactcacctgaac
aattgc
tcacctgaggaataccgaatgtctgagaagcacctgaaacaatgttcagc
atccttaatcatcaggaaaatgtaaatcaaaacaaccctgagattccacc
tcacatcagtcagaatggctaagatcaaaaattaggtaacagtagatggt
ggcaaggaaagaggaacactcctccattgttggtgggaaacactggatta
taactggcactattatttgtgaatttacaaacacacacatgcacacaaac
acacacacatgtctgtatatatatatatatatatatatatatatatatat
atggagagagatgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54589883_54591067
seq2: B6Ng01-145H22.b_43_1198 (reverse)

seq1  GCAATTGTTCAGGTTGATGTCAATGTCATTCTCAAACGTGGCATTGCTCC  50
      ||||||||||||| ||| ||||   ||||| ||||||||| || |||| |
seq2  GCAATTGTTCAGG-TGA-GTCA--TTCATT-TCAAACGTGACA-TGCT-C  43

seq1  TTTCATATTCTTCCATTGTCCTTCTGCCTCAAATTGAGGCAGACCAAATG  100
       ||||| ||||  || |||||||| |||||||  ||| ||||| ||||||
seq2  ATTCAT-TTCT--CA-TGTCCTTC-GCCTCAA--TGA-GCAGA-CAAATG  84

seq1  TGGGGGAACCTACCTCCACGAAGCTGTTACCCAATCCAATAAAGTGTGGG  150
      || ||  | ||||   || ||||||||||||  |||  ||||||||||||
seq2  TGAGG--AACTAC--TCAAGAAGCTGTTACC--ATC--ATAAAGTGTGGG  126

seq1  TTTGCCCTCGGGCTGT-ATCTAAAATTCTTTCTAGACTTTCAAACATGTG  199
      ||   |||| |||||| |||||||||||||||||||||||||||||||||
seq2  TT--GCCTC-GGCTGTAATCTAAAATTCTTTCTAGACTTTCAAACATGTG  173

seq1  GGGATGTTCTAGAATCCCTTTGACAACATCACTGTACAAGCTCCCTTTTC  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGATGTTCTAGAATCCCTTTGACAACATCACTGTACAAGCT-CCTTTTC  222

seq1  TCATAAGCGATTATATAGTATGCATCCTCGTCTCCTCTTTGTGCAAAATC  299
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  TCATAAGCGA-TATATAGTATGCATCCTCGTCTCCTC-TTGTGCAAAATC  270

seq1  TTTTCTTATTTGTTGCAGTTTGGTCCTTGTAAATGGTCTGGATTCTACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTTGTTGCAGTTTGGTCCTTGTAAATGGTCTGGATTCTACTT  320

seq1  CAGTGGTCACGTGAGTATGACTGGTTAAATGGCTAGAAGTAGCCTTAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCACGTGAGTATGACTGGTTAAATGGCTAGAAGTAGCCTTAACC  370

seq1  TTATGGGCAGATCTTGATGTTTTCAAGGCCCATTCATTATAAGCTGCCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGCAGATCTTGATGTTTTCAAGGCCCATTCATTATAAGCTGCCTC  420

seq1  TGAGTCCTCTCTGGATGGGTTGTTTGTCCACCTTTCTGCCAAATAGCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTCTCTGGATGGGTTGTTTGTCCACCTTTCTGCCAAATAGCTGG  470

seq1  CTAGCTATTTACCTTTCATTCTGTTGAAGTCAGTGTCTTTAACTATTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATTTACCTTTCATTCTGTTGAAGTCAGTGTCTTTAACTATTTTG  520

seq1  CATAAGAACCCAGAAACCTCTGAGGTGTTGCCTTCTCTTACTAAGAGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAACCCAGAAACCTCTGAGGTGTTGCCTTCTCTTACTAAGAGCTC  570

seq1  AGCCACCACATGAGTGGACAGCGAAGTAATCGACCTTAGGTTCCTTCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCACATGAGTGGACAGCGAAGTAATCGACCTTAGGTTCCTTCTGG  620

seq1  TGCTTAGGTTACCCTTGTTGAACTAAGCTGCATATTTTGTCCCTTCTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGTTACCCTTGTTGAACTAAGCTGCATATTTTGTCCCTTCTACA  670

seq1  ATGGGGTTGTTTCTCGACCTTTATATTCACTTTCCTCATTCCTGCATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTGTTTCTCGACCTTTATATTCACTTTCCTCATTCCTGCATTTT  720

seq1  GTCCCTTTGTCTGCCAAATAAGAATTTGACATCTCTTTTCTGAGGTGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTGTCTGCCAAATAAGAATTTGACATCTCTTTTCTGAGGTGCCA  770

seq1  ATTTAGGTGGCTGGTAGAGGAGGTCTGTGATTTAGGAGCGTTTCAAATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTGGCTGGTAGAGGAGGTCTGTGATTTAGGAGCGTTTCAAATGT  820

seq1  AAGATCTGCCCTTCTTACTCTTGGCTATCCAATCCCTCATAGAACTCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGCCCTTCTTACTCTTGGCTATCCAATCCCTCATAGAACTCAAA  870

seq1  GCAAACTGCTCCTGCTACCCAGTTTTTTTGTTTTGTTTTGTTTTGTTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGCTCCTGCTACCCAGTTTTTTTGTTTTGTTTTGTTTTGTTTTG  920

seq1  TTTTGTTTTGTTTTTGTTTTTGTTTTTTTTCTTTTCCAGACAGGGTTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTTGTTTTTGTTTTTTTTCTTTTCCAGACAGGGTTTCT  970

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGCTACCCAGTCTTAAAGCAGAATCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGCTACCCAGTCTTAAAGCAGAATCC  1020

seq1  TGAGCCTTCCTGGTAGTTAGTTCCTGCTACAGAGGATCCTCCCCAGGGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTCCTGGTAGTTAGTTCCTGCTACAGAGGATCCTCCCCAGGGCT  1070

seq1  CTGGTTCCTTCCTTCCTGGGACCACATCTCTGCTCCCTGTCCTAAAGCCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCTTCCTTCCTGGGACCACATCTCTGCTCCCTGTCCTAAAGCCT  1120

seq1  GTGCCTTTGTGGAAGGAAGTCCTGCCGTCAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTGTGGAAGGAAGTCCTGCCGTCAGAATTC  1156

seq1: chr8_54430587_54430903
seq2: B6Ng01-145H22.g_67_383

seq1  GAATTCTCACCTGAGGAATACCGAATGTCTGAGAAGCACCTGAAACAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGTCTGAGAAGCACCTGAAACAATG  50

seq1  TTCAGCATCCTTAATCATCAGGAAAATGTAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATCCTTAATCATCAGGAAAATGTAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACATCAGTCAGAATGGCTAAGATCAAAAATTAGGTAACAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACATCAGTCAGAATGGCTAAGATCAAAAATTAGGTAACAGTA  150

seq1  GATGGTGGCAAGGAAAGAGGAACACTCCTCCATTGTTGGTGGGAAACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGCAAGGAAAGAGGAACACTCCTCCATTGTTGGTGGGAAACACT  200

seq1  GGATTATAACTGGCACTATTATTTGTGAATTTACAAACACACACATGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATAACTGGCACTATTATTTGTGAATTTACAAACACACACATGCAC  250

seq1  ACAAACACACACACATGTCTGTATATATATATATATATATATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACACACACATGTCTGTATATATATATATATATATATATATATAT  300

seq1  ATATATATGGAGAGAGA  317
      |||||||||||||||||
seq2  ATATATATGGAGAGAGA  317