BAC Information

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BAC

Clone NameB6Ng01-146B11
Chromosome8 (Build37)
Map Location 53,660,918 - 53,780,052
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146B11.bB6Ng01-146B11.g
ACCDH943324DH943325
length1,1241,088
definitionDH943324|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B11, 5' end.DH943325|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,660,918 - 53,662,041)(53,778,953 - 53,780,052)
sequence
gaattcaaaatagaacaaggcagagcatatgggttgatttggaagggaag
aagggaaatatattataatctcaaaaactttacatgggcattattttctt
ttctaacatctacctgcatgctcagtgtatattggtccagatagtgtttg
atgagacgaaaagaaactatatttcagaatttgaaaataaaatccgaagg
ttggcaaattcacagaaaaagtgatattatagaccattcatgcattgccc
ttcatgggctcatatgtttaggcctggtctccagatggtgctactattca
gggaggagctgagaacttcaagggggtagaaactatctgaaagaatgagt
taataacagtatagacttgagtgcttgttcctctctgcccttgtattctt
cctatttccttactgttgtgaggtggccagcttcttattattcatgcttg
tactgctgtgatgcacagttctgcataatgcccaaagtgaagaggaagaa
caccactcactaaaaacagggagcccaaagacaaattttaatcctgtttg
gcttgtcaggtatttggtcctatgacattaagcttacataatttttattc
caattaaatctctgaaacatttattatttgccaattatgagctgccattt
tgcccattttatgctgcaatttgcaaaagaattacaataaagagaataaa
gcttttccaaataaagtataatcttttttgtcagtagaaactgtctccat
aaactatcagttactgcttttgtggtttccatgaaactgcttctagattt
tccctaacttcagtagtagtacatgtataacaattcatggcttcagttat
ttgaattaactgtatctactcattgaagttcttactatatcattgaccag
aaattggccctagaagttatcacaccagaccaattaaaggcactgaatat
atcctggctttatcagccaagatacagttacttttccttcagttttgagg
atgatagaatattatcctacagtggttagatctgtatagatcttggagat
ctagaagatttcagaaaagacattttatttcactaggtacctcagcgacc
gtaatctctcctattaattttata
gaattctttcataatgctgattcttacattacaaatatatataatttatt
tttaggctaagttgacaccaaaaattgtggttttaatgaaacaaaatata
ttcgttgaaaatttatgatagctaactttttagatatcaaaagaagaggt
ttaggccagaatttttcaaattttgaattattcttcggcatttaaaatat
tttagaggcaacttcacataatatattttatatattctttatatataatt
taaatattttatattaataaatatctttaaataaatattttatcttaata
tatgtatcttaaaatactttatttattcttcttgcacacagccttggtat
aagttcatggacttttggtgagtctgcaattacactatgactcatgacat
gagattaggtatgaacattttacattgtgacatcatgttctggtcaaaat
atttggataatgaaatatttagtatttcaatttttctataaatatttaat
ctatgaaaaaatccacttttagaaggttttgtaagtttaaaacaatttaa
gtaacattaatatatctcctatctataatttttttcattttaaactccaa
attttatttccttcccactccaacttctgactcttccacatcccatacat
cctccccactgcacagtctacacaaggaggtttccacctccccaacccaa
cccaactagacctctaaagtccctggggtctccattctcttgagggttag
gcatatcttctctaactaaacccagacccaacagtcctctgctgtatatg
tgttcaaggcctcatatcagcagttatatggtgtctagtattttaaaaga
ggaaaagtttgtgttaaaagccagttttaatataacgtaaagctagagaa
agtacccaaggagctaaagggatctgcaccctataggtggaacacattat
gactaaccagtactccggagctcttgactctagctgcttatgtatcaaga
tggctagtcgcatcactggaaagagagtcattggacatgcaaactgaata
tgctccattcaggggaacaccagggctaaaaaatggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53660918_53662041
seq2: B6Ng01-146B11.b_48_1171

seq1  GAATTCAAAATAGAACAAGGCAGAGCATATGGG-AGATTTGGAAGGGAAG  49
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GAATTCAAAATAGAACAAGGCAGAGCATATGGGTTGATTTGGAAGGGAAG  50

seq1  AAGGGAAATATATTATAATCTCAAAAACTTTACATGGGCATTATTTTCTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAATATATTATAATCTCAAAAACTTTACATGGGCATTATTTTCTT  100

seq1  TTCTAACATCTACCTGCATGCTCAGTGTATATTGGTCCAGATAGTGTTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACATCTACCTGCATGCTCAGTGTATATTGGTCCAGATAGTGTTTG  150

seq1  ATGAGACGAAAAGAAACTATATTTCAGAATTTGAAAATAAAATCCGAAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACGAAAAGAAACTATATTTCAGAATTTGAAAATAAAATCCGAAGG  200

seq1  TTGGCAAATTCACAGAAAAAGTGATATTATAGACCATTCATGCATTGCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAATTCACAGAAAAAGTGATATTATAGACCATTCATGCATTGCCC  250

seq1  TTCATGGGCTCATATGTTTAGGCCTGGTCTCCAGATGGTGCTACTATTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGCTCATATGTTTAGGCCTGGTCTCCAGATGGTGCTACTATTCA  300

seq1  GGGAGGAGCTGAGAACTTCAAGGGGGTAGAAACTATCTGAAAGAATGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGCTGAGAACTTCAAGGGGGTAGAAACTATCTGAAAGAATGAGT  350

seq1  TAATAACAGTATAGACTTGAGTGCTTGTTCCTCTCTGCCCTTGTATTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAGTATAGACTTGAGTGCTTGTTCCTCTCTGCCCTTGTATTCTT  400

seq1  CCTATTTCCTTACTGTTGTGAGGTGGCCAGCTTCTTATTATTCATGCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCCTTACTGTTGTGAGGTGGCCAGCTTCTTATTATTCATGCTTG  450

seq1  TACTGCTGTGATGCACAGTTCTGCATAATGCCCAAAGTGAAGAGGAAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTGATGCACAGTTCTGCATAATGCCCAAAGTGAAGAGGAAGAA  500

seq1  CACCACTCACTAAAAACAGGGAGCCCAAAGACAAATTTTAATCCTGTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCACTAAAAACAGGGAGCCCAAAGACAAATTTTAATCCTGTTTG  550

seq1  GCTTGTCAGGTATTTGGTCCTATGACATTAAGCTTACATAATTTTTATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCAGGTATTTGGTCCTATGACATTAAGCTTACATAATTTTTATTC  600

seq1  CAATTAAATCTCTGAAACATTTATTATTTGCCAATTATGAGCTGCCATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATCTCTGAAACATTTATTATTTGCCAATTATGAGCTGCCATTT  650

seq1  TGCCCATTTTATGCTGCAATTTGCAAAAGAATTACAATAAAGAGAATAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTTTATGCTGCAATTTGCAAAAGAATTACAATAAAGAGAATAAA  700

seq1  GCTTTTCCAAATAAAGTATAATC-TTTTTGTCAGTAGAAACTGTCTCCAT  748
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTTTTCCAAATAAAGTATAATCTTTTTTGTCAGTAGAAACTGTCTCCAT  750

seq1  AAACTATCAGTTACTGCTTTTGTGGTTTCCATGAAACTGCTTCTAGATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCAGTTACTGCTTTTGTGGTTTCCATGAAACTGCTTCTAGATTT  800

seq1  TCCCTAACTTCAGTAGTAGTACATGTATAACAATTCATGGCTTCAGTTA-  847
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCCTAACTTCAGTAGTAGTACATGTATAACAATTCATGGCTTCAGTTAT  850

seq1  TTGAATTAACTGTATCTACTCATTGAAGTTCTTACTATATCATTGACCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAACTGTATCTACTCATTGAAGTTCTTACTATATCATTGACCAG  900

seq1  AAATTGGCCCTAGAAGTTATCACACCAGACCAATTAAAGGCACTGAATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCCCTAGAAGTTATCACACCAGACCAATTAAAGGCACTGAATAT  950

seq1  ATCCTGGCTTTATCAGCCAAGATACAGTTAC-TTTCCTTCAGGTTTTGAG  996
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  ATCCTGGCTTTATCAGCCAAGATACAGTTACTTTTCCTTCA-GTTTTGAG  999

seq1  GATGATAGAATATTAT-CTACAGTTGTTAGATCTGTATTAGATCTTGGAG  1045
      |||||||||||||||| ||||||| |||||||||||| ||||||||||||
seq2  GATGATAGAATATTATCCTACAGTGGTTAGATCTGTA-TAGATCTTGGAG  1048

seq1  AATCTAG-AGATATCAGAAAAGACATTTTATTTTCACTATGTTACTCAAG  1094
       |||||| |||| ||||||||||||||||| |||||||| ||  ||| ||
seq2  -ATCTAGAAGATTTCAGAAAAGACATTTTA-TTTCACTAGGTACCTC-AG  1095

seq1  CATACAGTAATCTTTCCTATTAATTTTATA  1124
      |  || ||||||| ||||||||||||||||
seq2  C-GACCGTAATCTCTCCTATTAATTTTATA  1124

seq1: chr8_53778953_53780052
seq2: B6Ng01-146B11.g_68_1155 (reverse)

seq1  TCCCATTTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATACAGTTT  50
      ||||| |||||| ||||||||||||||||| | ||| |||||| ||||||
seq2  TCCCA-TTTTTTAGCCCTGGTGTTCCCCTG-AATGGAGCATATTCAGTTT  48

seq1  GCATGTCCAATGGACCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  100
      ||||||||||||   |||||||||||||||||  |||||| ||||||  |
seq2  GCATGTCCAATG--ACTCTCTTTCCAGTGATG--CGACTA-GCCATC--T  91

seq1  TGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCAT  150
      ||||||||| ||||||||||||||||||||||| ||||||||||| ||||
seq2  TGATACATAAGCAGCTAGAGTCAAGAGCTCCGGAGTACTGGTTAG-TCAT  140

seq1  AATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACT  200
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATG-TGTTCCACCTATAGGG-TGCAGATCCCTTTAGCTCCTTGGGTACT  188

seq1  TTCTCTAGCTTTACGTTATATTAAGACTGGCTTTTAACACAAACTTTTCC  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCTCTAGCTTTACGTTATATTAAAACTGGCTTTTAACACAAACTTTTCC  238

seq1  TCTTTTAAAATACTAGACACCATATAACTGCTGATATGAGGCCTTGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAATACTAGACACCATATAACTGCTGATATGAGGCCTTGAACA  288

seq1  CATATACAGCAGAGGACTGTTGGGTCTGGGTTTAGTTAGAGAAGATATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACAGCAGAGGACTGTTGGGTCTGGGTTTAGTTAGAGAAGATATGC  338

seq1  CTAACCCTCAAGAGAATGGAGACCCCAGGGACTTTAGAGGTCTAGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCTCAAGAGAATGGAGACCCCAGGGACTTTAGAGGTCTAGTTGGG  388

seq1  TTGGGTTGGGGAGGTGGAAACCTCCTTGTGTAGACTGTGCAGTGGGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGGGGAGGTGGAAACCTCCTTGTGTAGACTGTGCAGTGGGGAGG  438

seq1  ATGTATGGGATGTGGAAGAGTCAGAAGTTGGAGTGGGAAGGAAATAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGGATGTGGAAGAGTCAGAAGTTGGAGTGGGAAGGAAATAAAAT  488

seq1  TTGGAGTTTAAAATGAAAAAAATTATAGATAGGAGATATATTAATGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTAAAATGAAAAAAATTATAGATAGGAGATATATTAATGTTAC  538

seq1  TTAAATTGTTTTAAACTTACAAAACCTTCTAAAAGTGGATTTTTTCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGTTTTAAACTTACAAAACCTTCTAAAAGTGGATTTTTTCATAG  588

seq1  ATTAAATATTTATAGAAAAATTGAAATACTAAATATTTCATTATCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTTATAGAAAAATTGAAATACTAAATATTTCATTATCCAAAT  638

seq1  ATTTTGACCAGAACATGATGTCACAATGTAAAATGTTCATACCTAATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACCAGAACATGATGTCACAATGTAAAATGTTCATACCTAATCTC  688

seq1  ATGTCATGAGTCATAGTGTAATTGCAGACTCACCAAAAGTCCATGAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGAGTCATAGTGTAATTGCAGACTCACCAAAAGTCCATGAACTT  738

seq1  ATACCAAGGCTGTGTGCAAGAAGAATAAATAAAGTATTTTAAGATACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGGCTGTGTGCAAGAAGAATAAATAAAGTATTTTAAGATACATA  788

seq1  TATTAAGATAAAATATTTATTTAAAGATATTTATTAATATAAAATATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATAAAATATTTATTTAAAGATATTTATTAATATAAAATATTTA  838

seq1  AATTATATATAAAGAATATATAAAATATATTATGTGAAGTTGCCTCTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATATAAAGAATATATAAAATATATTATGTGAAGTTGCCTCTAAA  888

seq1  ATATTTTAAATGCCGAAGAATAATTCAAAATTTGAAAAATTCTGGCCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAATGCCGAAGAATAATTCAAAATTTGAAAAATTCTGGCCTAA  938

seq1  ACCTCTTCTTTTGATATCTAAAAAGTTAGCTATCATAAATTTTCAACGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCTTTTGATATCTAAAAAGTTAGCTATCATAAATTTTCAACGAA  988

seq1  TATATTTTGTTTCATTAAAACCACAATTTTTGGTGTCAACTTAGCCTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGTTTCATTAAAACCACAATTTTTGGTGTCAACTTAGCCTAAA  1038

seq1  AATAAATTATATATATTTGTAATGTAAGAATCAGCATTATGAAAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTATATATATTTGTAATGTAAGAATCAGCATTATGAAAGAATTC  1088