BAC Information

Click to search

BAC

Clone NameB6Ng01-147A20
Chromosome8 (Build37)
Map Location 126,953,859 - 127,089,366
singlet/doubletdoublet
Overlap genePgbd5, Cog2, Agt
Upstream geneDef8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2
Downstream geneCapn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147A20.bB6Ng01-147A20.g
ACCDH944036DH944037
length1,0681,086
definitionDH944036|Mus musculus domesticus DNA, BAC clone: B6Ng01-147A20, 5' end.DH944037|Mus musculus domesticus DNA, BAC clone: B6Ng01-147A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,953,859 - 126,954,932)(127,088,279 - 127,089,366)
sequence
gaattcataagatctcgtctacgttccagcatggacgggacacaatagcc
ccctcccaacctcagctaaggagctttgatggctagtatctgctaggaaa
gagtcagttttctttaggatgtggtacctgctaggttgatcatactccag
tagacagtcacacatctctgcatatatgggcagcagaaattggactcagt
aggttattaaaaagagaggggaggaaagaagggaaaaagaacaaagctgg
gaggcaggtgtgaggggagcagagctggaaagagttggagggggaaagag
agtatgagtatgaccaaaatacattgcacaggtgccatgaaaccctcaaa
gaataaaatataataaataagataattgttacaaatgctaaaaataaaag
actattttaataaaccagcagtaagccaggtgtggtggcccacaccttta
atcccagcacttggacggcaaaggcaggtggatgtctgggttcaaggcca
gtctggtctacagagtgagtttcaggacagccagggttacaccaagaaac
cctgcctcaataataataataataataataataataataataataataat
aacaacaacaataataataataattatcatcatcattatctaggcagtaa
actctaaggacaaaaatccaacaatgttaattttcaaccccacattcctc
tcatctccccaaggtcaggttcctactggagtctcggaggttagtatgaa
caagaggggtcagtcaccacagaaacccagcaaagctagaacaggcgacc
ggagactggtactgcctgcttctctgcctcctcaagaagtgatggaaagc
actcggagaaggaagccttgatgtcagaggccccagacacagcctggctg
aatctcacactgctcccaggagagctttgcacactgctggccatctgcac
tgtgggatgtagtgagactgacagcttgctgggttatttaggggctccgt
tgttaggtctggacgctgtctccctagagcagttcagttcccaggagact
ctgccttcttcacaaggt
atggcagaggctgaagcaggagggttacaagctcatataatatagtgatt
tcaaggttaagcagggcgatttactggactttgtcttacaataaaaagtc
aaaagagaactagagatgtaactcgttgatagaatgctttccaagcatgc
acgagagcctgggtcaatccctagcccacttagaaactacaagtggtggg
gtgcacctgtaatgcgggaggtggaggcaggaggattagaactccaagcc
atcctactctatacatggtgagttcaagaccagctggggctgcatgaacc
ttgtctggagtgggctgtaatggtacagcacctacctagcaactcaagaa
gcctcggactccatcgtcagacaggcacaccgcagggccctggaggtggg
aatgttagcaaggagatctgggagcagttcagtggatgagtgtgctttcc
acccggaacatcctgggttcccacggatctctgactgctctccttctcct
gactggcccccgctgtaggtgccgtctcctgggctatctacagcagccgc
gcttttggctttgagtgagttcttaagtacatagcaaacaaaagcagaaa
cagaccgcaagggatggctagaagcgccagacacatggcaaacatcagat
caggctctgaagacacccagcagagaccgactgtacaaacacacgtgcac
accctggaatgggatgaagaaaagtcagcctgactcccaaagccagtagc
tcagagagtgtgaacagcacatggctatttagccacaggatgtacattat
agccactgggaataccagggtagctaaaggtttggcttcatggctctaaa
taatctcttgtcactctcgaaaaatgtttttccaggatacacagaagcaa
atgcacagatcggagatgactcccacgggggcaggcctgaaaggcaccat
cttctgcatcttgacttgggtcagcctgacggctgggaaccgcgtttaca
tccacccctttcatctccttaccacaacagaagcacttgcgccagctgga
gaacccaggtgtggaaacctcccagaagtcaacgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_126953859_126954932
seq2: B6Ng01-147A20.b_42_1108

seq1  GAATTCATAAGATCTCGTCTACGTTCCAGCATGGACGGGACACAATAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGATCTCGTCTACGTTCCAGCATGGACGGGACACAATAGCC  50

seq1  CCCTCCCAACCTCAGCTAAGGAGCTTTGATGGCTAGTATCTGCTAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAACCTCAGCTAAGGAGCTTTGATGGCTAGTATCTGCTAGGAAA  100

seq1  GAGTCAGTTTTCTTTAGGATGTGGTACCTGCTAGGTTGATCATACTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTTTTCTTTAGGATGTGGTACCTGCTAGGTTGATCATACTCCAG  150

seq1  TAGACAGTCACACATCTCTGCATATATGGGCAGCAGAAATTGGACTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTCACACATCTCTGCATATATGGGCAGCAGAAATTGGACTCAGT  200

seq1  AGGTTATTAAAAAGAGAGGGGAGGAAAGAAGGGAAAAAGAACAAAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTAAAAAGAGAGGGGAGGAAAGAAGGGAAAAAGAACAAAGCTGG  250

seq1  GAGGCAGGTGTGAGGGGAGCAGAGCTGGAAAGAGTTGGAGGGGGAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGTGAGGGGAGCAGAGCTGGAAAGAGTTGGAGGGGGAAAGAG  300

seq1  AGTATGAGTATGACCAAAATACATTGCACAGGTGCCATGAAACCCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGTATGACCAAAATACATTGCACAGGTGCCATGAAACCCTCAAA  350

seq1  GAATAAAATATAATAAATAAGATAATTGTTACAAATGCTAAAAATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATATAATAAATAAGATAATTGTTACAAATGCTAAAAATAAAAG  400

seq1  ACTATTTTAATAAACCAGCAGTAAGCCAGGTGTGGTGGCCCACACCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTAATAAACCAGCAGTAAGCCAGGTGTGGTGGCCCACACCTTTA  450

seq1  ATCCCAGCACTTGGACGGCAAAGGCAGGTGGATGTCTGGGTTCAAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGACGGCAAAGGCAGGTGGATGTCTGGGTTCAAGGCCA  500

seq1  GTCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGTTACACCAAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGTTACACCAAGAAAC  550

seq1  CCTGCCTCAATAATAATAATAATAATAATAATAATAATAATAATAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCAATAATAATAATAATAATAATAATAATAATAATAATAATAAT  600

seq1  AACAACAACAATAATAATAATAATTATCATCATCATTATCTAGGCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAATAATAATAATAATTATCATCATCATTATCTAGGCAGTAA  650

seq1  ACTCTAAGGACAAAAATCCAACAATGTTAATTTTCAACCCCACATTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGGACAAAAATCCAACAATGTTAATTTTCAACCCCACATTCCTC  700

seq1  TCATCTCCCCAAGGTCAGGTTCCTACTGGAGTCTCGGAGGTTAGTATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCCCAAGGTCAGGTTCCTACTGGAGTCTCGGAGGTTAGTATGAA  750

seq1  CAAGAGGGGTCAGTCACCACAGAAACCCAGCAAAGCTAGAACAGGCGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGGTCAGTCACCACAGAAACCCAGCAAAGCTAGAACAGGCGACC  800

seq1  GGAGACTGGTACTGCCTGCTTCTCTGCCTCCTCAAGAAGTGATGGAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGGTACTGCCTGCTTCTCTGCCTCCTCAAGAAGTGATGGAAAGC  850

seq1  ACTCGGAGAAGGAAGCCTGAAGGTCAGAGGCCCCAGACACAGCCTGGCTG  900
      ||||||||||||||||||  | ||||||||||||||||||||||||||||
seq2  ACTCGGAGAAGGAAGCCTTGATGTCAGAGGCCCCAGACACAGCCTGGCTG  900

seq1  AATCTCACACTGCTCCCAGGAGAGCTTTGCACACTGCTGGCAATCTGCAC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATCTCACACTGCTCCCAGGAGAGCTTTGCACACTGCTGGCCATCTGCAC  950

seq1  TGTGGGAAGGTAAGTGAGACTGACAGCTTGCTGGGTTATTTTAGGGGGCT  1000
      ||||||| |   |||||||||||||||||||||||||||||   ||||||
seq2  TGTGGGATG--TAGTGAGACTGACAGCTTGCTGGGTTATTT--AGGGGCT  996

seq1  CCGTTGTTAAGTCTGGACGCTGTTCTCCCAAAGAGCAGTTCAGTTCCCAG  1050
      ||||||||| |||||||||||| ||||||  |||||||||||||||||||
seq2  CCGTTGTTAGGTCTGGACGCTG-TCTCCC-TAGAGCAGTTCAGTTCCCAG  1044

seq1  GAAGACTCTGCCATCTACACAAGG  1074
      | |||||||||| ||| |||||||
seq2  G-AGACTCTGCCTTCTTCACAAGG  1067

seq1: chr8_127088279_127089366
seq2: B6Ng01-147A20.g_80_1165 (reverse)

seq1  AACGTTGAC-TCTGGGAGTGTCTCCACACTGGGGTTCTCCAGCTGGGCGC  49
      ||||||||| |||||||| || |||||||  ||||||||||||| |||||
seq2  AACGTTGACTTCTGGGAG-GTTTCCACACCTGGGTTCTCCAGCT-GGCGC  48

seq1  AGGTGCTCTTGTTGTGGTAAAGGAGATGGAAGGGGTGGATGTATACGCGG  99
      | |||||  ||||||||| ||||||||| |||||||||||||| ||||||
seq2  AAGTGCTTCTGTTGTGGT-AAGGAGATGAAAGGGGTGGATGTAAACGCGG  97

seq1  TCCCCAGCCGTCAGGCTGACCCAGGTCAAGATGCAGAAGATGGTGGCCTT  149
      | ||||||||||||||||||||| ||||||||||||||||||||| | ||
seq2  TTCCCAGCCGTCAGGCTGACCCAAGTCAAGATGCAGAAGATGGTGCCTTT  147

seq1  CAGGCCTGCCCCCGTGGGAGTCATCTCCGATCTGTGCATTTGCTTCTGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCCCCCGTGGGAGTCATCTCCGATCTGTGCATTTGCTTCTGTG  197

seq1  TATCCTGGAAAAACATTTTTCGAGAGTGACAAGAGATTATTTAGAGCCCT  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATCCTGGAAAAACATTTTTCGAGAGTGACAAGAGATTATTTAGAGCCAT  247

seq1  GAAGCCAAACCTTTAGCTACCCTGGTATTCCCAGTGGCTATAATGTACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAACCTTTAGCTACCCTGGTATTCCCAGTGGCTATAATGTACAT  297

seq1  CCTGTGGCTAAATAGCCATGTGCTGTTCACACTCTCTGAGCTACTGGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCTAAATAGCCATGTGCTGTTCACACTCTCTGAGCTACTGGCTT  347

seq1  TGGGAGTCAGGCTGACTTTTCTTCATCCCATTCCAGGGTGTGCACGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCAGGCTGACTTTTCTTCATCCCATTCCAGGGTGTGCACGTGTG  397

seq1  TTTGTACAGTCGGTCTCTGCTGGGTGTCTTCAGAGCCTGATCTGATGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAGTCGGTCTCTGCTGGGTGTCTTCAGAGCCTGATCTGATGTTT  447

seq1  GCCATGTGTCTGGCGCTTCTAGCCATCCCTTGCGGTCTGTTTCTGCTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGTCTGGCGCTTCTAGCCATCCCTTGCGGTCTGTTTCTGCTTTT  497

seq1  GTTTGCTATGTACTTAAGAACTCACTCAAAGCCAAAAGCGCGGCTGCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTATGTACTTAAGAACTCACTCAAAGCCAAAAGCGCGGCTGCTGT  547

seq1  AGATAGCCCAGGAGACGGCACCTACAGCGGGGGCCAGTCAGGAGAAGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCCAGGAGACGGCACCTACAGCGGGGGCCAGTCAGGAGAAGGAG  597

seq1  AGCAGTCAGAGATCCGTGGGAACCCAGGATGTTCCGGGTGGAAAGCACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGAGATCCGTGGGAACCCAGGATGTTCCGGGTGGAAAGCACAC  647

seq1  TCATCCACTGAACTGCTCCCAGATCTCCTTGCTAACATTCCCACCTCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACTGAACTGCTCCCAGATCTCCTTGCTAACATTCCCACCTCCAG  697

seq1  GGCCCTGCGGTGTGCCTGTCTGACGATGGAGTCCGAGGCTTCTTGAGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGCGGTGTGCCTGTCTGACGATGGAGTCCGAGGCTTCTTGAGTTG  747

seq1  CTAGGTAGGTGCTGTACCATTACAGCCCACTCCAGACAAGGTTCATGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAGGTGCTGTACCATTACAGCCCACTCCAGACAAGGTTCATGCAG  797

seq1  CCCCAGCTGGTCTTGAACTCACCATGTATAGAGTAGGATGGCTTGGAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTGGTCTTGAACTCACCATGTATAGAGTAGGATGGCTTGGAGTT  847

seq1  CTAATCCTCCTGCCTCCACCTCCCGCATTACAGGTGCACCCCACCACTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTCCTGCCTCCACCTCCCGCATTACAGGTGCACCCCACCACTTG  897

seq1  TAGTTTCTAAGTGGGCTAGGGATTGACCCAGGCTCTCGTGCATGCTTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTAAGTGGGCTAGGGATTGACCCAGGCTCTCGTGCATGCTTGGA  947

seq1  AAGCATTCTATCAACGAGTTACATCTCTAGTTCTCTTTTGACTTTTTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCTATCAACGAGTTACATCTCTAGTTCTCTTTTGACTTTTTATT  997

seq1  GTAAGACAAAGTCCAGTAAATCGCCCTGCTTAACCTTGAAATCACTATAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACAAAGTCCAGTAAATCGCCCTGCTTAACCTTGAAATCACTATAT  1047

seq1  TATATGAGCTTGTAACCCTCCTGCTTCAGCCTCTGCCAT  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGCTTGTAACCCTCCTGCTTCAGCCTCTGCCAT  1086