BAC Information

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BAC

Clone NameB6Ng01-147G06
Chromosome8 (Build37)
Map Location 88,037,735 - 88,038,814
singlet/doubletsinglet
Overlap geneGpt2
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik
Downstream geneDnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147G06.bB6Ng01-147G06.g
ACCDH944287DH944288
length9101,078
definitionDH944287|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G06, 5' end.DH944288|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaattcccagcaaccacagctacaatgtactcatatacataaaat
aaatagataaaaaattttttttggtttttcgagacaggatttctctgtat
agccctggctgtccaggaacgcacttggaagaccaaactggcctcaaact
ctcaaatccacctgtatctgcctcctgagtgctgggattaaaggagtgtg
cccccacccccgtgagataagaattccacctgattcaagtttaaaccctt
cctgctgacaccagatttgcttctgaatacaccatgaatatggtgtgttg
tgttcactggatatacttcctctaaccataagggctttgattctctgtct
ttttctaatcttcccctaccctaaaaatccattccaaactttcaagaacc
tggcaaaagaacttgtttcctctgtctacgtgttagtccatccttaatta
ctaggaaaaaaccctcttcaaaccgtcacaagagcctcgtgactgagcac
tcgacaaaattgaaatacaggccccctaccataaaatcaagcctcttatt
catgtggagtactatagtgcttttacaacaggctatactggtagacgtta
tctcttattggacagtattgagagctttgagacgggcagagtttttcctg
cgtgtagaggaaacttgttcattcccttttacctgtgtgggcccgagcct
gggacaccaacaccagcgttccattccctgttagtcacttatgaaagtgg
gccctcacttaatgaacgggcttcaaagaattttgattttcctattccaa
acagagtcttatttaactgttagagagcttgtaggaaatcccttcctatt
gtacatatttcagccctaggtgtgcggtgatgcatacccgaagtgccaca
ctaggcaatg
gaattccactgctacacacaacgcacacttgaaaataaagacaaatttat
gcttacccagggcttgggactcagcaatcactgcacatgaagacaccaaa
gagacaaacatgaacagttgagagaataagagaaagtcatatatggcttt
acaggggtcaggttacaccctgtttgaggagacataagacacagctttga
tacaggtccagaaagctggaaggaagtgcctaagggccaaaccagaagat
gggcaaaaggaattccctataaactgacagaaacatctgtgattacactt
cctctctcctataacataccacagatgtcctatgaggacaccccagcagg
agataagaggaatagccctggcccaacctccaggtgtaatgacatacacc
tctaacacaagcatttgctatgctgaagcaggagggttgcaagttcgagg
ccagcctaaggagggcttctaagtgaataagtaaaagagctgtcttatca
gagtccgtagcccagagtcagtgagctcctgggctacggctctcagtgag
atcacagaagatgtgttctaaggtttcatctgatgagcaatggctggagt
tgctgaggccctccaaggacagattctaagaaggaacccaactcagagga
cagcggagctgagaagcaaacacaataatgttgattcaggttactgcttt
atgcccgggctccacagctccaccatacggtctttcagttttgagttgga
ttttcgtcttgaaaccagaagcaccctggcttaacatctcaagtctcttt
ggcatcttttaccaagctggctatggtatgtggttggaaagtttccattt
cctatcacccaccctcttttagcagctgactgatttccatgcattaagac
cccagaaagcaaggaaagatggttgcccacttaaaagttaatctcataag
gatgactcatgagccagacatggtgatgcatgactttagtttcagcactt
tgggagcagtgaagcaaatgtctgtgagttcaaggccagcctggtctgca
tagtaggttcagggacagtcagagctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88037735_88038814
seq2: B6Ng01-147G06.g_68_1145 (reverse)

seq1  ATAGCTCTGACTGTCCTGGAACTTACTATGCAGACCAGGCTGGCCTTGAA  50
      ||||||||||||||||  |||| |||||||||||||||||||||||||||
seq2  ATAGCTCTGACTGTCCCTGAACCTACTATGCAGACCAGGCTGGCCTTGAA  50

seq1  CTCACAGACATCTGCTTCACTGCCTCCCAAGTGCTGGAACTAAAGTCATG  100
      ||||||||||| |||||||||||  || |||||||| |||||||||||||
seq2  CTCACAGACATTTGCTTCACTGCTCCCAAAGTGCTGAAACTAAAGTCATG  100

seq1  CATCACCATGTCTGGCCTCATGAGTCATCCTTATGAGATTAACTTTTAAG  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATCACCATGTCTGG-CTCATGAGTCATCCTTATGAGATTAACTTTTAAG  149

seq1  TGGGCAACCATCTTTCCTTGCTTTCTGGGGTCTTAATGCATGGAAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAACCATCTTTCCTTGCTTTCTGGGGTCTTAATGCATGGAAATCAG  199

seq1  TCAGCTGCTAAAAGAGGGTGGGTGATAGGAAATGGAAACTTTCCAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCTAAAAGAGGGTGGGTGATAGGAAATGGAAACTTTCCAACCAC  249

seq1  ATACCATAGCCAGCTTGGTTAAAAGATGCCAAAGAGACTTGAGATGTTAA  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATACCATAGCCAGCTTGG-TAAAAGATGCCAAAGAGACTTGAGATGTTAA  298

seq1  GCCAGGGTGCTTCTGGTTTCAAGACGAAAATCCAACTCAAAACTGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGTGCTTCTGGTTTCAAGACGAAAATCCAACTCAAAACTGAAAGA  348

seq1  CCGTATGGTGGAGCTGTGGAGCCCGGGCATAAAGCAGTAACCTGAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATGGTGGAGCTGTGGAGCCCGGGCATAAAGCAGTAACCTGAATCAA  398

seq1  CATTATTGTGTTTGCTTCTCAGCTCCGCTGTCCTCTGAGTTGGGTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTGTTTGCTTCTCAGCTCCGCTGTCCTCTGAGTTGGGTTCCTT  448

seq1  CTTAGAATCTGTCCTTGGAGGGCCTCAGCAACTCCAGCCATTGCTCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATCTGTCCTTGGAGGGCCTCAGCAACTCCAGCCATTGCTCATCA  498

seq1  GATGAAACCTTAGAACACATCTTCTGTGATCTCACTGAGAGCCGTAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACCTTAGAACACATCTTCTGTGATCTCACTGAGAGCCGTAGCCC  548

seq1  AGGAGCTCACTGACTCTGGGCTACGGACTCTGATAAGACAGCTCTTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCACTGACTCTGGGCTACGGACTCTGATAAGACAGCTCTTTTAC  598

seq1  TTATTCACTTAGAAGCCCTCCTTAGGCTGGCCTCGAACTTGCAACCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACTTAGAAGCCCTCCTTAGGCTGGCCTCGAACTTGCAACCCTCC  648

seq1  TGCTTCAGCATAGCAAATGCTTGTGTTAGAGGTGTATGTCATTACACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGCATAGCAAATGCTTGTGTTAGAGGTGTATGTCATTACACCTG  698

seq1  GAGGTTGGGCCAGGGCTATTCCTCTTATCTCCTGCTGGGGTGTCCTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGGCCAGGGCTATTCCTCTTATCTCCTGCTGGGGTGTCCTCATA  748

seq1  GGACATCTGTGGTATGTTATAGGAGAGAGGAAGTGTAATCACAGATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTGTGGTATGTTATAGGAGAGAGGAAGTGTAATCACAGATGTTT  798

seq1  CTGTCAGTTTATAGGGAATTCCTTTTGCCCATCTTCTGGTTTGGCCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTTTATAGGGAATTCCTTTTGCCCATCTTCTGGTTTGGCCCTTA  848

seq1  GGCACTTCCTTCCAGCTTTCTGGACCTGTATCAAAGCTGTGTCTTATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCCTTCCAGCTTTCTGGACCTGTATCAAAGCTGTGTCTTATGTC  898

seq1  TCCTCAAACAGGGTGTAACCTGACCCCTGTAAAGCCATATATGACTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAACAGGGTGTAACCTGACCCCTGTAAAGCCATATATGACTTTCT  948

seq1  CTTATTCTCTCAACTGTTCATGTTTGTCTCTTTGGTGTCTTCATGTGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTCTCAACTGTTCATGTTTGTCTCTTTGGTGTCTTCATGTGCAG  998

seq1  TGATTGCTGAGTCCCAAGCCCTGGGTAAGCATAAATTTGTCTTTATTTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTGAGTCCCAAGCCCTGGGTAAGCATAAATTTGTCTTTATTTTC  1048

seq1  AAGTGTGCGTTGTGTGTAGCAGTGGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  AAGTGTGCGTTGTGTGTAGCAGTGGAATTC  1078