BAC Information

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BAC

Clone NameB6Ng01-147H18
Chromosome8 (Build37)9 (Build37)
Map Location 123,440,147 - 123,440,605101,927,180 - 101,928,308
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUsp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik, Gse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8
Downstream geneLOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147H18.bB6Ng01-147H18.g
ACCDH944354DH944355
length9241,130
definitionDH944354|Mus musculus domesticus DNA, BAC clone: B6Ng01-147H18, 5' end.DH944355|Mus musculus domesticus DNA, BAC clone: B6Ng01-147H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,440,147 - 123,440,605)(101,927,180 - 101,928,308)
sequence
gaattcttctgtttgatgacccttccacattacattcagtcatacctcca
tagagatgtgtcaggttcctagactttcttcttggatgaccttgacaatt
taaggaaaaatggtcagataacttataccctatccttcaagttggggctt
gtcggatatatttcgtgttattaggcttggaagactgcagatgttatgtg
ccattttcaggatgtcctatggagcagactcactgtaagtgtgagttatt
atttctgatgtcgaccttgggaatcaagcatctaggagagatgctttggc
tcctcctccgccttagttgattatttggcagaaaccacctgtggtccaca
cctagggatctgattgttagcacctctgtttggagatggaggaggatctt
tgtgatttactgggaattctcctacacacttagcttgtcagttatcacca
tttatgcaaatatttgtttactctcaattatttgtttatgtcatcgtgga
cttgtggacatttatgtaatgcttttgtttataatttagtatgactttac
ttattttattgttctagttaataaagtcctctactagatgagggttttga
tatggtaggatatactgggcctttagaaactctttaatctggcttctgtg
tcccttctgtatatccctgacagtgtgagtttgcttgctttataagcatt
tcttcatttttctacttatattaagatgctccaggcttatatcttcgtct
atctatcttaccccaatccttagttcaatttatttctctaaggagcgctc
ctttctcattggaaaagccaaggtctgatttccagatgtggtcattccta
ttagaatggcttctaggcccttctcagctgataaaatgtgtgtgtgtgtg
tgtgagtgtgtgtgtgtgtgcgcg
gaattcagtaatggcctacagagtccgctgagccgagagagatggcaaca
gaccatctgtgataggactcctagctgtataagcaaggctgttttcttct
tagaaaagattcaacgacctccaacaattccaaatgtcttattttcataa
cttcttcaaacatcatacttcaacagaacaactcaattcagagtgcattt
gcagtttgccatgaattttctttaaaactacatgtaaatatttttgatat
cttaaaaaaatgtattaacatagtaaacttgtatcagttgttagatccca
aagtggattatggataaacctcttgaaggaattattttgacccaaaaatc
aattaagagattatgaagtaatttctaataagcaaggataatgcttcaaa
cttaataattatcatagaaaaaaagcacatttaattattcttatattttg
gaattggaaatgattatctgtttggggaaaatatccctattgaataaggg
aaacaaaatgagtaagaaaagaaacttaaatgtggtcaaatttgtagcta
aattagtgggtcagggcacataccgacttgggggcactgccaaggttttc
cacgtggctgtactccaggtctatgtatggaaggatggacttttgagata
gattcatgacggcatctcagcctttcacggagccacaagccttcctgcct
ttctttggagccttttggaaaaacagcagcctggctattcctatgtttga
tgcccatctctcgtactgttgtccatgaccagtgaccagtgttgggctgg
tacttgtccctgcgttgtgactgacatcctttctcacttgccttagcatc
atccttatctacagtttatccacatcccccttgttagagcaagccagaag
atgctgcgcactagctgttttccatggggatgctcttgggatttgtctgc
tactaagcaacttgggcaggaagggtcctcccaaagttttcagaacttca
aaccaagataaggatgtctctccttgtcttgacctttttcccttctccat
ctcgagctacttgaaactgcctttagttgttctctgattctgaatactta
aggtatgtctggatactgacagtagatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_123440147_123440605
seq2: B6Ng01-147H18.b_856_969 (reverse)

seq1  CGCGCACACACACACACACACACACACACACAC-GTCTCTCTAACA-CAC  48
      ||||||||||||||||||| |||||||||||||   |  | || || |  
seq2  CGCGCACACACACACACACTCACACACACACACACACATTTTATCAGCTG  50

seq1  ATA-----CTATA--CCACTTTTTCTCTCAAACACACACAT-TGGACACA  90
      | |     ||| |  ||| || |  |   ||  || ||||| |||| |  
seq2  AGAAGGGCCTAGAAGCCA-TTCTAATAGGAATGAC-CACATCTGGA-AAT  97

seq1  CACACACATACCATACCACTCTCTCTCTCACACACACATTACACATGCAC  140
      || ||     |  | ||                                 
seq2  CAGACCTTGGCTTTTCC---------------------------------  114

seq1  ACACACGATTCTCTCTCTCACACATACATACCATACCACTCTCTCTCAAA  190
                                                        
seq2  --------------------------------------------------  114

seq1  CACACACATTGCACACACACATACACACACACACACACACACACACACAC  240
                                                        
seq2  --------------------------------------------------  114

seq1  ACACAATTCTCTCTGTCACATACACATATCTTACCACTCTCACACACATA  290
                                                        
seq2  --------------------------------------------------  114

seq1  CACATACTTTCTGTCTCTCTCTCTGTCTCTGTCTGTCTGTCTGTCTGTCT  340
                                                        
seq2  --------------------------------------------------  114

seq1  GTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACA  390
                                                        
seq2  --------------------------------------------------  114

seq1  CACACACACACACGTTTAGAATAATTAAATTCTTAAGTTAAGAGTTGGGC  440
                                                        
seq2  --------------------------------------------------  114

seq1  CTGGACCTTGGCTTGTTCC  459
                         
seq2  -------------------  114

seq1: chr9_101927180_101928308
seq2: B6Ng01-147H18.g_69_1198 (reverse)

seq1  GAAATCTACTGTCAGTATCAAGAC-TACCTTTAAGGATGTCAGAATCAGA  49
      ||||||||||||||||||| |||| |||| ||||| || |||||||||||
seq2  GAAATCTACTGTCAGTATCCAGACATACC-TTAAGTAT-TCAGAATCAGA  48

seq1  GAACAACTTAAAGGCAGTTTTCAAGTAGCTCAGAGATGGAGAGGGAAAAA  99
      ||||||| ||||||||| ||||||||||||| |||||||||| || ||||
seq2  GAACAAC-TAAAGGCAG-TTTCAAGTAGCTC-GAGATGGAGAAGGGAAAA  95

seq1  AGGTCAAGCCAAGGAAGAGACATCCTTTATCTTGGTTTGAGCTACTGAAA  149
      |||||||| ||||| |||||||||| ||||||||||||||  | ||||||
seq2  AGGTCAAGACAAGG-AGAGACATCC-TTATCTTGGTTTGAAGTTCTGAAA  143

seq1  ACTTTTGGGAGA-CCTTTCTGCCC-AGTTGCTTTAGTAGCAGACAAAT-C  196
      ||||| ||  || |||| |||||| |||||| |||||||||||||||| |
seq2  ACTTTGGGAGGACCCTTCCTGCCCAAGTTGC-TTAGTAGCAGACAAATCC  192

seq1  CAAGAGCAT-CCCATGGAAAACAGCTAGTGCGCAGCATCTTCTTGCCTGC  245
      ||||||||| ||||||||||||||||||||||||||||||||| || |||
seq2  CAAGAGCATCCCCATGGAAAACAGCTAGTGCGCAGCATCTTCTGGCTTGC  242

seq1  TCTAACAAGGGGGATGTGGATAAACTGTAGATAAGGATGATGCTAAGGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAGGGGGATGTGGATAAACTGTAGATAAGGATGATGCTAAGGCA  292

seq1  AGTGAGAAAGGATGTCAGTCACAACGCA-GGACAAGTACCAGCCCAACAC  344
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTGAGAAAGGATGTCAGTCACAACGCAGGGACAAGTACCAGCCCAACAC  342

seq1  TGGTCACTGGTCATGGACAACAGTACGAGAGATGGGCATCAAACATAGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTGGTCATGGACAACAGTACGAGAGATGGGCATCAAACATAGGA  392

seq1  ATAGCCAGGCTGCTGTTTTTCCAAAAGGCTCCAAAG-AAGGCAGGAAGGC  443
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAGCCAGGCTGCTGTTTTTCCAAAAGGCTCCAAAGAAAGGCAGGAAGGC  442

seq1  TTGTGGCTCCGTG-AAGGCTGAGATGCCGTCATGAATCTATCTCAAAAGT  492
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTCCGTGAAAGGCTGAGATGCCGTCATGAATCTATCTCAAAAGT  492

seq1  CCATCCTTCCATACATAGACCTGGAGTACAGCCACGTGG-AAACCTTGGC  541
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCATCCTTCCATACATAGACCTGGAGTACAGCCACGTGGAAAACCTTGGC  542

seq1  AGTGCCCCCAAGTCGGTATGTGCCCTGACCCACTAATTTAGCTACAAATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCCCAAGTCGGTATGTGCCCTGACCCACTAATTTAGCTACAAATT  592

seq1  TGACCACATTTAAGTTTCTTTTCTTACTCATTTTGTTTCCCTTATTCAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACATTTAAGTTTCTTTTCTTACTCATTTTGTTTCCCTTATTCAAT  642

seq1  AGGGATATTTTCCCCAAACAGATAATCATTTCCAATTCCAAAATATAAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATTTTCCCCAAACAGATAATCATTTCCAATTCCAAAATATAAGA  692

seq1  ATAATTAAATGTGCTTTTTTTCTATGATAATTATTAAGTTTGAAGCATTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAATGTGCTTTTTTTCTATGATAATTATTAAGTTTGAAGCATTA  742

seq1  TCCTTGCTTATTAGAAATTACTTCATAATCTCTTAATTGATTTTTGGGTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTTATTAGAAATTACTTCATAATCTCTTAATTGATTTTTGGGTC  792

seq1  AAAATAATTCCTTCAAGAGGTTTATCCATAATCCACTTTGGGATCTAACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTCCTTCAAGAGGTTTATCCATAATCCACTTTGGGATCTAACA  842

seq1  ACTGATACAAGTTTACTATGTTAATACATTTTTTTAAGATATCAAAAATA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATACAAGTTTACTATGTTAATACATTTTTTTAAGATATCAAAAATA  892

seq1  TTTACATGTAGTTTTAAAGAAAATTCATGGCAAACTGCAAATGCACTCTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTAGTTTTAAAGAAAATTCATGGCAAACTGCAAATGCACTCTG  942

seq1  AATTGAGTTGTTCTGTTGAAGTATGATGTTTGAAGAAGTTATGAAAATAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTTGTTCTGTTGAAGTATGATGTTTGAAGAAGTTATGAAAATAA  992

seq1  GACATTTGGAATTGTTGGAGGTCGTTGAATCTTTTCTAAGAAGAAAACAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGGAATTGTTGGAGGTCGTTGAATCTTTTCTAAGAAGAAAACAG  1042

seq1  CCTTGCTTATACAGCTAGGAGTCCTATCACAGATGGTCTGTTGCCATCTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTATACAGCTAGGAGTCCTATCACAGATGGTCTGTTGCCATCTC  1092

seq1  TCTCGGCTCAGCGGACTCTGTAGGCCATTACTGAATTC  1129
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGCTCAGCGGACTCTGTAGGCCATTACTGAATTC  1130