BAC Information

Click to search

BAC

Clone NameB6Ng01-149C02
Chromosome8 (Build37)
Map Location 54,250,075 - 54,405,398
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149C02.bB6Ng01-149C02.g
ACCDH945552DH945553
length1,1081,097
definitionDH945552|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C02, 5' end.DH945553|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,404,286 - 54,405,398)(54,250,075 - 54,251,165)
sequence
gaattctgtaaactctcagtattccttgaaaactataagaaagaaattcc
actaaggattccttctgtgatgtagaagacagaatcgaataaagacactc
atattccagaaagtgttggaccattccatgactagatgtgggtcattgat
ttaagagttcatgaaaattagcctacctttaagtgaagttatcagttagg
tacactatagtttatatgcacactgcatgccatttaataaaacttagcag
agttattaaaaagtggatcaacatcaaaatcaaagattataaattgtaaa
aaactagaaataaatgtgatctggagattctaattacgttcaaatcgtcg
acttaaaatagtggtcattaaacaaaaagtggaaagatgggaacttgata
ggaaactggattatgtagataagcagagttttgaaaccaaaataatgaat
aaatatattcattaaaattagtcttagcaatgttttaaataaggcagaag
atgaaattagaaacctgaaaaagctttatatacttaaacatatacagaaa
taaaatgacagaattcagaaaatctacatgaattagaggaaattcaatga
aattaagaacaggacagaacagtatttgaattcttattgtctgataattt
tcctataaagacaaaaacatcaaacttacaatttaagaactttgacgaat
tctaattaggaggaatacaaagaaagaaatccagtgaagtgcaccttaaa
aagcagctgaactaagacagaaacaaaaatcttcaaagtggacaaaaatc
aaaatcacatttcttaacacagaataaaataatagtagctgctggcttct
ctatagaaacaggtgggagaagccacccttgattaccagctttagttcca
aatgagaaattatcatcatataaatattagcataagtggtgtagttgacc
cagatattataatatagcaataataaaaacatggaatgcagttcttggga
ctctggctaaagtagtttccacaggtgagagtgtgcactaaagaagctaa
cgcttctgggacaaggcaagcaccacagcctctgggaaggtcctgtttgg
cttcatct
gaattcttagtcctctcttatatgcaggatatgtttaaggactctctacg
caaaagatgaactctttgttaatatgtctgtatgttaagaaaaccattca
tctcgagtacacgatcatattccaaaacagaccattcatctggtgattat
ctttgggttcttttctgctccttaataaatcccaatatgaatgaaaaatt
atgagagtaaaatctgcgcagattttgtgtatagaccaaggcatctcagt
atatgaatgaaatttataataaaccacagagatgcattctgtgggtacaa
tgttgatccccataggcactggcattagcagtaacaacaccttagagcat
cttttccaagacaaaagcctgtattttttcacaggtaaatggttatttct
ttctttattttttttattaaatcattgtagatattgagcaatccagctca
cacagcgtagtcatggttactatcagaatactatgtaaaataggtagcca
atatataaagaatatgtattttaagaaatatagactggtactttactaac
agttccatcagaaatgctcatgattgtctgcaaaccatcctttcatctcc
ctgatattcattaagattgatatgctatagacaggaaaaaaaaatgcaaa
catgtccagtaagacctgaatggtgatgcacagaatccatttgggcacag
atctttggtcacactcatagtaagttaaatataatgagttttgtgtaaca
gcctcactgaatgttcttcccatgtggtcaggaaatttacatttaaaatt
tagggagaaaataccttttatctactaaaagttattaaagattaaatcaa
agcattcaacaataaaatcttggggagcgaatgaggtatactcaactcca
ggaaatcattaataatgctgaaatttattttgaacatggttaaagaaacc
taatctttttaaatggtcagaatataatggcatggttgcatcactttaaa
actaacttgtatacttgaggaaaaattaaatacttaactgcacaatgttt
taccataaacagaaagggatcatttatatattgggtggatcaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54404286_54405398
seq2: B6Ng01-149C02.b_43_1150 (reverse)

seq1  AGATGAAGGCCCAAAACAGGACCTTTCCCAGAAGCTGTGTTGCTTTGGCC  50
      ||||||||   | |||||||||| |||||||| |||||| ||| ||| | 
seq2  AGATGAAG---CCAAACAGGACC-TTCCCAGAGGCTGTGGTGC-TTGCCT  45

seq1  TGTCCCAGAAGCTGTTAGCTTCTTTAGTGCACACTCTCACCTGTGGAAAC  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGAAGC-GTTAGCTTCTTTAGTGCACACTCTCACCTGTGGAAAC  94

seq1  TACTTTAGGCAGAGTCCCAGAACCTGCATT-CATGTTTTTATTATTGCTA  149
      |||||||| ||||||||||  | ||||||| |||||||||||||||||||
seq2  TACTTTAGCCAGAGTCCCAAGAACTGCATTCCATGTTTTTATTATTGCTA  144

seq1  TATTATTATATCTGGGTCAACTACACCACTTATGCTAATATTTATATGAT  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATATCTGGGTCAACTACACCACTTATGCTAATATTTATATGAT  194

seq1  GATAAATTCTCATTTGGAACTAAAGCTTGTAATCAAGGGTGGCTTCTCCC  249
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATAATTTCTCATTTGGAACTAAAGCTGGTAATCAAGGGTGGCTTCTCCC  244

seq1  ATCTGTTTCTATAGAGAAGCCAGCAGCTACTATTATTTTATTCTGTGTTA  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTCTATAGAGAAGCCAGCAGCTACTATTATTTTATTCTGTGTTA  294

seq1  AGAAATGTGATTTTGATTTTTGTCCACCTTGAAGATTTTTGTTTCTGTCT  349
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAAATGTGATTTTGATTTTTGTCCACTTTGAAGATTTTTGTTTCTGTCT  344

seq1  TAGTTCAGCTGCTTTTTAAGGTGCACTTCACTGGATTTCTTTCTTTGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGCTGCTTTTTAAGGTGCACTTCACTGGATTTCTTTCTTTGTAT  394

seq1  TCCTCCTAATTAGAATTCGTCAAAGTTCTTAAATTGTAAGTTTGATGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTAATTAGAATTCGTCAAAGTTCTTAAATTGTAAGTTTGATGTTT  444

seq1  TTGTCTTTATAGGAAAATTATCAGACAATAAGAATTCAAATACTGTTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTATAGGAAAATTATCAGACAATAAGAATTCAAATACTGTTCTG  494

seq1  TCCTGTTCTTAATTTCATTGAATTTCCTCTAATTCATGTAGATTTTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTTAATTTCATTGAATTTCCTCTAATTCATGTAGATTTTCTGA  544

seq1  ATTCTGTCATTTTATTTCTGTATATGTTTAAGTATATAAAGCTTTTTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCATTTTATTTCTGTATATGTTTAAGTATATAAAGCTTTTTCAG  594

seq1  GTTTCTAATTTCATCTTCTGCCTTATTTAAAACATTGCTAAGACTAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAATTTCATCTTCTGCCTTATTTAAAACATTGCTAAGACTAATTT  644

seq1  TAATGAATATATTTATTCATTATTTTGGTTTCAAAACTCTGCTTATCTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATATATTTATTCATTATTTTGGTTTCAAAACTCTGCTTATCTAC  694

seq1  ATAATCCAGTTTCCTATCAAGTTCCCATCTTTCCACTTTTTGTTTAATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAGTTTCCTATCAAGTTCCCATCTTTCCACTTTTTGTTTAATGA  744

seq1  CCACTATTTTAAGTCGACGATTTGAACGTAATTAGAATCTCCAGATCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATTTTAAGTCGACGATTTGAACGTAATTAGAATCTCCAGATCACA  794

seq1  TTTATTTCTAGTTTTTTACAATTTATAATCTTTGATTTTGATGTTGATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTAGTTTTTTACAATTTATAATCTTTGATTTTGATGTTGATCC  844

seq1  ACTTTTTAATAACTCTGCTAAGTTTTATTAAATGGCATGCAGTGTGCATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAATAACTCTGCTAAGTTTTATTAAATGGCATGCAGTGTGCATA  894

seq1  TAAACTATAGTGTACCTAACTGATAACTTCACTTAAAGGTAGGCTAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATAGTGTACCTAACTGATAACTTCACTTAAAGGTAGGCTAATTT  944

seq1  TCATGAACTCTTAAATCAATGACCCACATCTAGTCATGGAATGGTCCAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACTCTTAAATCAATGACCCACATCTAGTCATGGAATGGTCCAAC  994

seq1  ACTTTCTGGAATATGAGTGTCTTTATTCGATTCTGTCTTCTACATCACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGGAATATGAGTGTCTTTATTCGATTCTGTCTTCTACATCACAG  1044

seq1  AAGGAATCCTTAGTGGAATTTCTTTCTTATAGTTTTCAAGGAATACTGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCCTTAGTGGAATTTCTTTCTTATAGTTTTCAAGGAATACTGAG  1094

seq1  AGTTTACAGAATTC  1113
      ||||||||||||||
seq2  AGTTTACAGAATTC  1108

seq1: chr8_54250075_54251165
seq2: B6Ng01-149C02.g_71_1167

seq1  GAATTCTTAGTCCTCTCTTATATGCAGGATATGTTTAAGGACTCTCTACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTCCTCTCTTATATGCAGGATATGTTTAAGGACTCTCTACG  50

seq1  CAAAAGATGAACTCTTTGTTAATATGTCTGTATGTTAAGAAAACCATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATGAACTCTTTGTTAATATGTCTGTATGTTAAGAAAACCATTCA  100

seq1  TCTCGAGTACACGATCATATTCCAAAACAGACCATTCATCTGGTGATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAGTACACGATCATATTCCAAAACAGACCATTCATCTGGTGATTAT  150

seq1  CTTTGGGTTCTTTTCTGCTCCTTAATAAATCCCAATATGAATGAAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTTCTTTTCTGCTCCTTAATAAATCCCAATATGAATGAAAAATT  200

seq1  ATGAGAGTAAAATCTGCGCAGATTTTGTGTATAGACCAAGGCATCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGTAAAATCTGCGCAGATTTTGTGTATAGACCAAGGCATCTCAGT  250

seq1  ATATGAATGAAATTTATAATAAACCACAGAGATGCATTCTGTGGGTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGAAATTTATAATAAACCACAGAGATGCATTCTGTGGGTACAA  300

seq1  TGTTGATCCCCATAGGCACTGGCATTAGCAGTAACAACACCTTAGAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATCCCCATAGGCACTGGCATTAGCAGTAACAACACCTTAGAGCAT  350

seq1  CTTTTCCAAGACAAAAGCCTGTATTTTTTCACAGGTAAATGGTTATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAAGACAAAAGCCTGTATTTTTTCACAGGTAAATGGTTATTTCT  400

seq1  TTCTTTATTTTTTTTATTAAATCATTGTAGATATTGAGCAATCCAGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTTTTTTATTAAATCATTGTAGATATTGAGCAATCCAGCTCA  450

seq1  CACAGCGTAGTCATGGTTACTATCAGAATACTATGTAAAATAGGTAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGTAGTCATGGTTACTATCAGAATACTATGTAAAATAGGTAGCCA  500

seq1  ATATATAAAGAATATGTATTTTAAGAAATATAGACTGGTACTTTACTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAGAATATGTATTTTAAGAAATATAGACTGGTACTTTACTAAC  550

seq1  AGTTCCATCAGAAATGCTCATGATTGTCTGCAAACCATCCTTTCATCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATCAGAAATGCTCATGATTGTCTGCAAACCATCCTTTCATCTCC  600

seq1  CTGATATTCATTAAGATTGATATGCTATAGACAGGAAAAAAAAATGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTCATTAAGATTGATATGCTATAGACAGGAAAAAAAAATGCAAA  650

seq1  CATGTCCAGTAAGACCTGAATGGTGATGCACAGAATCCA-TTGGGCACAG  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATGTCCAGTAAGACCTGAATGGTGATGCACAGAATCCATTTGGGCACAG  700

seq1  ATCTTTGGTCACACTCATAGTAAGTTAAATATAATGAGTTTTGTGTAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGTCACACTCATAGTAAGTTAAATATAATGAGTTTTGTGTAACA  750

seq1  GCCTCACTGAATGTTCTTCCCATGTGGTCAGGAAATTTTACATTTAAAAA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GCCTCACTGAATGTTCTTCCCATGTGGTCAGGAAA-TTTACATTTAAAAT  799

seq1  TTTAGGAGAAAATACCTTTTATCTACTAAAAGTTATTAAAGATTAAATCA  849
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGAAAATACCTTTTATCTACTAAAAGTTATTAAAGATTAAATCA  849

seq1  AAGCAATCAACAATAAAATTCTTGGGAGCGAATGAGGTATACTCAACTCC  899
      ||||| |||||||||||||  | |||||||||||||||||||||||||||
seq2  AAGCATTCAACAATAAAATCTTGGGGAGCGAATGAGGTATACTCAACTCC  899

seq1  AGGAAATCAATAATAATGCTGAAA-TTAATTTGAACAATGTTAAAGAAAA  948
      ||||||||| |||||||||||||| ||| ||||||||  |||||||||| 
seq2  AGGAAATCATTAATAATGCTGAAATTTATTTTGAACATGGTTAAAGAAAC  949

seq1  CCAATC-TTTTAAAT-GTCAGAATATAAT-GCAT-GTTGCATCAGCTTTA  994
      | |||| |||||||| ||||||||||||| |||| ||||||||| |||||
seq2  CTAATCTTTTTAAATGGTCAGAATATAATGGCATGGTTGCATCA-CTTTA  998

seq1  AAACT-ACTTGTATACTTGAGGAAAAATAGACTACTTAACTGCACAATGT  1043
      ||||| ||||||||||||||||||||||  | ||||||||||||||||||
seq2  AAACTAACTTGTATACTTGAGGAAAAATTAAATACTTAACTGCACAATGT  1048

seq1  TTTA-CATAAACATAAAAGGGATAATTTATATATTGG--TGATCAATATA  1090
      |||| ||||||||  |||||||| |||||||||||||   |||||| |||
seq2  TTTACCATAAACA-GAAAGGGATCATTTATATATTGGGTGGATCAA-ATA  1096

seq1  T  1091
      |
seq2  T  1097